Wall clock time and date at job start Tue Mar 31 2020 11:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99953 * 2 1 4 4 C 1.50700 * 109.47080 * 269.99722 * 3 2 1 5 5 H 1.07997 * 120.00025 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99944 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99997 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99905 * 180.02562 * 6 4 3 9 9 H 1.48511 * 109.47209 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47410 * 119.99973 * 8 6 4 11 11 H 1.48498 * 109.47079 * 240.00173 * 8 6 4 12 12 C 1.34783 * 120.00099 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00176 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99666 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.47185 * 179.97438 * 14 12 2 16 16 N 1.46891 * 109.47404 * 180.02562 * 15 14 12 17 17 C 1.46900 * 111.00135 * 169.99952 * 16 15 14 18 18 C 1.50693 * 109.47441 * 288.73910 * 17 16 15 19 19 C 1.38653 * 120.78925 * 273.95446 * 18 17 16 20 20 C 1.38202 * 119.16321 * 179.79765 * 19 18 17 21 21 N 1.31869 * 120.76540 * 0.48801 * 20 19 18 22 22 C 1.31868 * 121.72378 * 359.74048 * 21 20 19 23 23 C 1.38206 * 120.76529 * 0.02562 * 22 21 20 24 24 C 1.46899 * 111.00366 * 293.95653 * 16 15 14 25 25 C 1.52998 * 117.49830 * 245.59478 * 24 16 15 26 26 C 1.52999 * 117.49948 * 176.97127 * 24 16 15 27 27 H 1.09004 * 109.46867 * 270.00006 * 1 2 3 28 28 H 1.08997 * 109.47013 * 29.99653 * 1 2 3 29 29 H 1.08995 * 109.46865 * 150.00240 * 1 2 3 30 30 H 1.08999 * 109.47344 * 30.00320 * 3 2 1 31 31 H 1.09009 * 109.46783 * 150.00372 * 3 2 1 32 32 H 0.96998 * 119.99783 * 179.97438 * 7 6 4 33 33 H 1.09008 * 109.47107 * 60.00565 * 14 12 2 34 34 H 1.09000 * 109.47334 * 300.00111 * 14 12 2 35 35 H 1.09003 * 109.46664 * 59.99934 * 15 14 12 36 36 H 1.09000 * 109.46873 * 300.00779 * 15 14 12 37 37 H 1.09011 * 109.46847 * 48.73676 * 17 16 15 38 38 H 1.09001 * 109.47393 * 168.73367 * 17 16 15 39 39 H 1.08005 * 120.41655 * 0.02562 * 19 18 17 40 40 H 1.08010 * 119.61661 * 180.20431 * 20 19 18 41 41 H 1.07999 * 119.61857 * 180.02562 * 22 21 20 42 42 H 1.07993 * 120.41734 * 179.97438 * 23 22 21 43 43 H 1.09003 * 115.54754 * 31.30439 * 24 16 15 44 44 H 1.08992 * 117.50006 * 359.97438 * 25 24 16 45 45 H 1.09007 * 117.49694 * 145.02257 * 25 24 16 46 46 H 1.09005 * 117.49624 * 214.98032 * 26 24 16 47 47 H 1.08995 * 117.50073 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4368 3.4175 -3.4339 9 1 2.8589 2.4174 -4.3674 10 1 2.7988 4.7380 -3.6671 11 1 4.8992 3.5262 -3.6676 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0018 16 7 1.6451 -4.9074 -0.0024 17 6 2.5514 -6.0385 -0.2418 18 6 3.0110 -6.0190 -1.6768 19 6 2.2558 -6.6202 -2.6722 20 6 2.7070 -6.5786 -3.9778 21 7 3.8452 -5.9849 -4.2795 22 6 4.5913 -5.4070 -3.3585 23 6 4.2019 -5.4045 -2.0324 24 6 0.9002 -5.0859 1.2510 25 6 1.3291 -6.2308 2.1708 26 6 0.0232 -6.3329 1.3802 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6085 2.0284 0.5139 31 1 3.1500 1.1383 0.5138 32 1 4.0301 4.4440 -0.8504 33 1 0.7584 -2.5299 -0.8904 34 1 0.7590 -2.5302 0.8897 35 1 3.0069 -3.5779 0.8878 36 1 3.0056 -3.5771 -0.8922 37 1 3.4157 -5.9574 0.4176 38 1 2.0274 -6.9728 -0.0407 39 1 1.3248 -7.1116 -2.4307 40 1 2.1229 -7.0417 -4.7594 41 1 5.5174 -4.9302 -3.6437 42 1 4.8175 -4.9300 -1.2827 43 1 0.5437 -4.1691 1.7206 44 1 2.1637 -6.8518 1.8457 45 1 1.2549 -6.0674 3.2460 46 1 -0.9101 -6.2366 1.9351 47 1 -0.0014 -7.0207 0.5349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093222349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:09 Heat of formation + Delta-G solvation = 38.389580 kcal Electronic energy + Delta-G solvation = -26517.623431 eV Core-core repulsion = 22894.661159 eV Total energy + Delta-G solvation = -3622.962272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47203 -39.32892 -38.59229 -35.01713 -34.67724 -33.14172 -32.54635 -31.27258 -30.31301 -27.84250 -26.48411 -25.64832 -23.98160 -23.40198 -22.77829 -22.31691 -22.01183 -19.86642 -18.32511 -17.35222 -16.55905 -16.53610 -16.40650 -16.13669 -15.69241 -15.53612 -15.32135 -14.80684 -14.22463 -14.00754 -13.92734 -13.76155 -13.62986 -13.11393 -12.85320 -12.54651 -12.24899 -12.18404 -12.12645 -11.83008 -11.73350 -11.65575 -11.42701 -11.30228 -11.12240 -10.86938 -10.63482 -10.58791 -10.54765 -10.14961 -9.73705 -9.60065 -9.54835 -9.20402 -8.90056 -8.43383 -8.36096 -7.63580 -6.03989 -4.08555 1.07206 1.11775 3.30492 3.31862 3.37832 3.41103 3.46529 3.68948 3.85041 4.08024 4.39314 4.43755 4.47683 4.56087 4.59208 4.68159 4.79843 4.96621 5.00352 5.10958 5.13125 5.24336 5.24642 5.31006 5.37830 5.40595 5.53556 5.55925 5.63421 5.66045 5.70643 5.81682 5.85318 5.89367 5.92342 6.05714 6.07354 6.21658 6.23557 6.61622 6.79433 6.88173 7.06007 7.44203 7.54889 7.90589 7.92717 8.24107 8.42440 8.91006 9.09973 9.56784 11.04140 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.003620 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.089897 B = 7732.265718 C = 9526.938995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.505 3.495 13 O -0.545 6.545 14 C -0.134 4.134 15 C 0.070 3.930 16 N -0.502 5.502 17 C 0.089 3.911 18 C -0.034 4.034 19 C -0.153 4.153 20 C 0.094 3.906 21 N -0.487 5.487 22 C 0.101 3.899 23 C -0.162 4.162 24 C 0.022 3.978 25 C -0.222 4.222 26 C -0.171 4.171 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.135 0.865 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 -22.469 3.073 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.291 3.709 13 O -0.424 6.424 14 C -0.174 4.174 15 C -0.058 4.058 16 N -0.224 5.224 17 C -0.039 4.039 18 C -0.043 4.043 19 C -0.174 4.174 20 C -0.063 4.063 21 N -0.196 5.196 22 C -0.056 4.056 23 C -0.183 4.183 24 C -0.087 4.087 25 C -0.261 4.261 26 C -0.209 4.209 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.151 0.849 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.153 0.847 43 H 0.142 0.858 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.447 -22.223 1.854 23.214 hybrid contribution 0.282 0.494 0.590 0.820 sum -6.165 -21.730 2.444 22.719 Atomic orbital electron populations 1.21639 0.81451 1.02670 1.00318 1.48157 1.06184 1.07874 1.71259 1.19286 0.92523 0.78142 0.97508 1.21476 1.36367 1.06209 0.92329 0.92435 1.24935 0.95362 0.96384 0.97430 1.69942 1.38500 1.14349 1.30663 0.86454 0.78112 0.78322 0.84628 1.19769 1.20949 1.20838 1.20270 0.88063 0.85138 0.77460 1.90659 1.13959 1.87367 1.50384 1.21638 0.99180 0.92656 1.03941 1.21908 0.94767 0.86323 1.02770 1.61833 1.26928 1.02073 1.31524 1.21149 0.95708 0.95238 0.91756 1.20124 0.93603 0.94854 0.95687 1.21960 1.00554 1.01130 0.93724 1.22743 0.92671 0.95679 0.95209 1.67669 1.05847 1.08449 1.37672 1.22769 0.98777 0.95129 0.88926 1.22159 0.97494 1.00241 0.98385 1.22740 1.01113 0.93951 0.90869 1.23585 0.99232 1.04501 0.98779 1.23064 0.94680 1.00813 1.02348 0.93843 0.90817 0.92317 0.95069 0.93888 0.92789 0.88760 0.89819 0.93482 0.89437 0.92882 0.89246 0.84950 0.82948 0.82678 0.84739 0.85846 0.88449 0.88705 0.88400 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.24 59.85 0.61 1.93 16 2 N -0.60 -12.84 2.86 -182.95 -0.52 -13.36 16 3 C 0.24 6.47 5.16 -5.19 -0.03 6.44 16 4 C -0.52 -15.09 9.39 -34.44 -0.32 -15.41 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.50 10.40 7.67 -10.98 -0.08 10.31 16 13 O -0.55 -13.55 15.56 5.56 0.09 -13.46 16 14 C -0.13 -1.96 4.24 -27.88 -0.12 -2.08 16 15 C 0.07 0.96 4.08 -3.83 -0.02 0.95 16 16 N -0.50 -5.48 4.67 -228.09 -1.07 -6.55 16 17 C 0.09 0.85 3.77 -4.98 -0.02 0.83 16 18 C -0.03 -0.37 4.96 -104.32 -0.52 -0.89 16 19 C -0.15 -1.55 9.83 -39.44 -0.39 -1.93 16 20 C 0.09 1.02 11.18 -17.55 -0.20 0.83 16 21 N -0.49 -6.40 10.36 -13.25 -0.14 -6.54 16 22 C 0.10 1.24 11.18 -17.55 -0.20 1.04 16 23 C -0.16 -1.90 8.35 -39.44 -0.33 -2.23 16 24 C 0.02 0.21 5.82 -67.71 -0.39 -0.18 16 25 C -0.22 -1.74 9.55 -26.73 -0.26 -2.00 16 26 C -0.17 -1.29 9.93 -26.73 -0.27 -1.56 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.04 1.28 7.42 -51.92 -0.39 0.89 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 33 H 0.09 1.33 7.40 -51.92 -0.38 0.95 16 34 H 0.08 1.03 6.38 -51.93 -0.33 0.69 16 35 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.09 1.38 6.00 -51.93 -0.31 1.07 16 37 H 0.05 0.51 7.69 -51.92 -0.40 0.11 16 38 H 0.09 0.72 5.82 -51.93 -0.30 0.42 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.13 1.47 8.00 -52.49 -0.42 1.05 16 43 H 0.12 1.16 6.34 -51.93 -0.33 0.83 16 44 H 0.10 0.74 5.98 -51.93 -0.31 0.43 16 45 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.70 7.50 -51.93 -0.39 0.31 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -34.34 382.34 -10.01 -44.35 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.24 Total: 1.04 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.61 Total: -2.28 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.99 Total: -52.53 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.34 -10.01 -44.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093222349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.740 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds