Wall clock time and date at job start Tue Mar 31 2020 11:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46842 * 111.00125 * 2 1 4 4 C 1.53035 * 109.52855 * 185.83925 * 3 2 1 5 5 C 1.53125 * 109.27530 * 300.82379 * 4 3 2 6 6 C 1.53112 * 109.16247 * 57.64912 * 5 4 3 7 7 H 1.09003 * 109.53645 * 62.30774 * 6 5 4 8 8 C 1.53001 * 109.50356 * 182.40459 * 6 5 4 9 9 N 1.46502 * 109.47330 * 184.80360 * 8 6 5 10 10 C 1.34774 * 120.00244 * 179.97438 * 9 8 6 11 11 O 1.21589 * 120.00010 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00138 * 179.97438 * 10 9 8 13 13 C 1.39247 * 119.99869 * 175.71279 * 12 10 9 14 14 C 1.39479 * 119.83202 * 215.01908 * 13 12 10 15 15 C 1.36378 * 120.16672 * 179.76220 * 14 13 12 16 16 C 1.40870 * 119.82896 * 0.51592 * 15 14 13 17 17 C 1.41154 * 120.16729 * 179.71622 * 16 15 14 18 18 H 1.08001 * 120.00225 * 214.80506 * 17 16 15 19 19 C 1.39890 * 119.99571 * 34.80902 * 17 16 15 20 20 N 1.30874 * 120.00439 * 355.55651 * 19 17 16 21 21 Si 1.86804 * 119.99783 * 175.55630 * 19 17 16 22 22 H 1.48504 * 109.46852 * 60.00282 * 21 19 17 23 23 H 1.48499 * 109.47070 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47341 * 299.99867 * 21 19 17 25 25 C 1.40873 * 119.66968 * 359.74166 * 16 15 14 26 26 C 1.36372 * 119.83051 * 0.02562 * 25 16 15 27 27 C 1.46853 * 110.99876 * 124.20872 * 2 1 3 28 28 H 1.08998 * 109.47002 * 295.79005 * 1 2 3 29 29 H 1.08992 * 109.47415 * 55.79254 * 1 2 3 30 30 H 1.09008 * 109.47147 * 175.79445 * 1 2 3 31 31 H 1.09004 * 109.46286 * 305.85683 * 3 2 1 32 32 H 1.09004 * 109.46375 * 65.83119 * 3 2 1 33 33 H 1.09002 * 109.50118 * 60.75894 * 4 3 2 34 34 H 1.08995 * 109.50707 * 180.83846 * 4 3 2 35 35 H 1.09005 * 109.52134 * 297.74403 * 5 4 3 36 36 H 1.09000 * 109.52062 * 177.55771 * 5 4 3 37 37 H 1.09002 * 109.46965 * 64.80489 * 8 6 5 38 38 H 1.09000 * 109.47157 * 304.80622 * 8 6 5 39 39 H 0.97003 * 119.99600 * 359.72691 * 9 8 6 40 40 H 0.97001 * 120.00175 * 355.71722 * 12 10 9 41 41 H 1.07997 * 119.91561 * 0.02861 * 14 13 12 42 42 H 1.08001 * 120.09021 * 180.25818 * 15 14 13 43 43 H 0.97003 * 120.00850 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.08281 * 179.97438 * 25 16 15 45 45 H 1.07997 * 119.91692 * 179.97438 * 26 25 16 46 46 H 1.08998 * 109.46148 * 54.14669 * 27 2 1 47 47 H 1.08996 * 109.46208 * 294.17261 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5369 1.0144 6 6 3.5181 -0.8714 1.0209 7 1 3.7813 -1.3842 0.0957 8 6 4.0680 -1.6558 2.2139 9 7 3.5832 -3.0371 2.1555 10 6 3.9421 -3.9182 3.1101 11 8 4.6679 -3.5666 4.0201 12 7 3.4958 -5.1887 3.0567 13 6 3.9371 -6.1216 3.9915 14 6 4.1255 -7.4500 3.6104 15 6 4.5622 -8.3684 4.5191 16 6 4.8128 -7.9746 5.8482 17 6 5.2592 -8.9204 6.7961 18 1 4.9405 -8.8454 7.8253 19 6 6.1145 -9.9550 6.4024 20 7 6.4314 -10.0977 5.1406 21 14 6.8045 -11.1327 7.6777 22 1 5.6870 -11.8318 8.3616 23 1 7.6768 -12.1312 7.0087 24 1 7.5977 -10.3720 8.6762 25 6 4.6150 -6.6322 6.2268 26 6 4.1825 -5.7242 5.3058 27 6 1.9952 -0.7708 1.1338 28 1 -0.3633 0.4471 0.9253 29 1 -0.3634 0.5777 -0.8498 30 1 -0.3634 -1.0250 -0.0754 31 1 1.5634 1.9257 -0.8330 32 1 1.7326 1.8608 0.9377 33 1 3.7813 0.8568 -1.0906 34 1 3.9098 2.3513 -0.1317 35 1 3.8886 1.0354 1.9561 36 1 5.1997 0.4714 0.8905 37 1 3.7309 -1.1913 3.1406 38 1 5.1575 -1.6514 2.1806 39 1 3.0010 -3.3165 1.4317 40 1 2.8671 -5.4533 2.3670 41 1 3.9291 -7.7512 2.5920 42 1 4.7116 -9.3958 4.2216 43 1 7.0248 -10.8149 4.8676 44 1 4.8047 -6.3230 7.2442 45 1 4.0301 -4.6948 5.5946 46 1 1.5634 -1.7715 1.1243 47 1 1.7325 -0.2708 2.0660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108499259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:06 Heat of formation + Delta-G solvation = -11.659269 kcal Electronic energy + Delta-G solvation = -25711.786375 eV Core-core repulsion = 22086.653822 eV Total energy + Delta-G solvation = -3625.132553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.08899 -39.30418 -37.40453 -35.41103 -34.28783 -33.54891 -32.80580 -31.21536 -29.51026 -28.72076 -27.20131 -26.19187 -24.58956 -23.21945 -22.06805 -21.39976 -20.79251 -20.25561 -19.81250 -17.90864 -17.19842 -16.66855 -16.05277 -15.82916 -15.24142 -15.07638 -14.89748 -14.82224 -14.60652 -14.00724 -13.83398 -13.52643 -13.22721 -13.16351 -12.70407 -12.66101 -12.59918 -12.43744 -12.06161 -11.79711 -11.64705 -11.41551 -11.29839 -11.09243 -11.02220 -10.93583 -10.79551 -10.69593 -10.65773 -10.05269 -9.48520 -9.41075 -9.18448 -8.89041 -8.78911 -8.71281 -7.47856 -6.77150 -6.55491 -4.27773 2.72605 3.06845 3.12205 3.14103 3.16216 3.23040 3.52193 3.76179 4.02737 4.38396 4.43105 4.53101 4.70613 4.72035 4.76864 4.91019 5.01453 5.07798 5.11800 5.22182 5.38867 5.40397 5.45021 5.50789 5.53555 5.62685 5.70489 5.71241 5.82125 5.89650 6.08658 6.25146 6.49560 6.63597 6.67907 6.69690 6.82903 6.89115 7.10787 7.21486 7.33213 7.47064 7.71387 7.92768 8.03372 8.15584 8.37248 8.53233 8.69919 8.99125 8.99312 9.15907 10.35761 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.038073 B = 0.002052 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.258194 B =13641.410519 C =13858.057438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.053 3.947 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.096 4.096 7 H 0.086 0.914 8 C 0.147 3.853 9 N -0.753 5.753 10 C 0.694 3.306 11 O -0.579 6.579 12 N -0.668 5.668 13 C 0.025 3.975 14 C -0.124 4.124 15 C -0.141 4.141 16 C 0.097 3.903 17 C -0.462 4.462 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.814 5.814 21 Si 0.915 3.085 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.267 1.267 25 C -0.204 4.204 26 C -0.087 4.087 27 C 0.060 3.940 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.392 0.608 40 H 0.391 0.609 41 H 0.090 0.910 42 H 0.132 0.868 43 H 0.277 0.723 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.076 0.924 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.976 18.036 -12.527 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.075 4.075 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.115 4.115 7 H 0.105 0.895 8 C 0.022 3.978 9 N -0.410 5.410 10 C 0.395 3.605 11 O -0.455 6.455 12 N -0.314 5.314 13 C -0.068 4.068 14 C -0.144 4.144 15 C -0.161 4.161 16 C 0.095 3.905 17 C -0.493 4.493 18 H 0.093 0.907 19 C -0.145 4.145 20 N -0.442 5.442 21 Si 0.740 3.260 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.192 1.192 25 C -0.224 4.224 26 C -0.107 4.107 27 C -0.068 4.068 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.225 0.775 40 H 0.224 0.776 41 H 0.108 0.892 42 H 0.149 0.851 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.126 0.874 46 H 0.094 0.906 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.988 18.001 -12.269 23.203 hybrid contribution -0.424 -0.381 0.488 0.750 sum -8.412 17.620 -11.781 22.804 Atomic orbital electron populations 1.22355 0.87155 1.02441 1.00423 1.61912 1.07626 1.13766 1.43509 1.22123 0.95805 0.89138 1.00396 1.21573 0.94243 1.00219 0.99334 1.21556 1.00431 0.94422 0.98852 1.21436 0.94487 0.96494 0.99067 0.89536 1.21130 0.99110 0.80082 0.97519 1.45135 1.55884 1.10890 1.29090 1.16029 0.80776 0.81060 0.82656 1.90910 1.41169 1.77922 1.35548 1.42120 1.47596 1.08071 1.33610 1.17078 1.13112 0.88198 0.88398 1.20295 1.03618 0.92398 0.98132 1.21174 1.01430 0.99456 0.93998 1.17711 0.88760 0.91076 0.92985 1.19436 1.25294 1.08253 0.96348 0.90740 1.25860 0.95684 0.97065 0.95931 1.69755 1.29209 1.29019 1.16186 0.86262 0.79273 0.79542 0.80903 1.19124 1.20504 1.19154 1.20810 1.09869 0.93360 0.98384 1.20421 1.00239 0.98683 0.91371 1.22154 0.94849 0.98378 0.91408 0.95687 0.91382 0.91193 0.90838 0.94926 0.90951 0.91307 0.91791 0.91086 0.91900 0.91381 0.77457 0.77593 0.89172 0.85054 0.91189 0.88674 0.87383 0.90601 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.59 60.06 0.58 0.74 16 2 N -0.54 -4.32 4.91 -242.96 -1.19 -5.52 16 3 C 0.05 0.37 5.46 -3.84 -0.02 0.35 16 4 C -0.12 -0.76 6.09 -26.65 -0.16 -0.92 16 5 C -0.11 -0.84 5.29 -26.61 -0.14 -0.98 16 6 C -0.10 -0.80 2.39 -90.54 -0.22 -1.02 16 7 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 8 C 0.15 1.65 5.07 -4.04 -0.02 1.63 16 9 N -0.75 -9.49 5.30 -65.22 -0.35 -9.84 16 10 C 0.69 12.54 8.40 -86.92 -0.73 11.81 16 11 O -0.58 -13.09 13.76 5.29 0.07 -13.02 16 12 N -0.67 -12.00 5.31 -14.10 -0.07 -12.08 16 13 C 0.02 0.56 6.31 -83.57 -0.53 0.04 16 14 C -0.12 -2.88 9.90 -39.79 -0.39 -3.27 16 15 C -0.14 -3.68 8.62 -39.26 -0.34 -4.01 16 16 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 17 C -0.46 -12.56 9.02 -37.86 -0.34 -12.90 16 18 H 0.07 1.94 7.85 -52.49 -0.41 1.53 16 19 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 20 N -0.81 -21.56 10.60 55.54 0.59 -20.98 16 21 Si 0.92 19.37 29.56 -169.99 -5.03 14.34 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 25 C -0.20 -5.30 9.74 -39.26 -0.38 -5.69 16 26 C -0.09 -2.15 8.61 -39.79 -0.34 -2.49 16 27 C 0.06 0.50 4.61 -3.83 -0.02 0.48 16 28 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.39 3.78 7.67 -40.82 -0.31 3.47 16 40 H 0.39 5.46 8.83 -40.82 -0.36 5.10 16 41 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.13 3.54 6.13 -52.49 -0.32 3.22 16 43 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 44 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 45 H 0.11 2.66 6.22 -52.49 -0.33 2.33 16 46 H 0.08 0.62 7.18 -51.93 -0.37 0.25 16 47 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -31.59 374.85 -11.65 -43.24 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.58 Total: 10.68 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -3.74 Total: -12.48 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -1.03 Total: -48.41 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.07 Total: -13.02 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.59 -11.65 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108499259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.582 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds