Wall clock time and date at job start Tue Mar 31 2020 11:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46842 * 111.00125 * 2 1 4 4 C 1.53035 * 109.52855 * 185.83925 * 3 2 1 5 5 C 1.53125 * 109.27530 * 300.82379 * 4 3 2 6 6 C 1.53112 * 109.16247 * 57.64912 * 5 4 3 7 7 H 1.09003 * 109.53645 * 62.30774 * 6 5 4 8 8 C 1.53001 * 109.50356 * 182.40459 * 6 5 4 9 9 N 1.46502 * 109.47330 * 184.80360 * 8 6 5 10 10 C 1.34774 * 120.00244 * 179.97438 * 9 8 6 11 11 O 1.21589 * 120.00010 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00138 * 179.97438 * 10 9 8 13 13 C 1.39247 * 119.99869 * 175.71279 * 12 10 9 14 14 C 1.39479 * 119.83202 * 215.01908 * 13 12 10 15 15 C 1.36378 * 120.16672 * 179.76220 * 14 13 12 16 16 C 1.40870 * 119.82896 * 0.51592 * 15 14 13 17 17 C 1.41154 * 120.16729 * 179.71622 * 16 15 14 18 18 H 1.08001 * 120.00225 * 214.80506 * 17 16 15 19 19 C 1.39890 * 119.99571 * 34.80902 * 17 16 15 20 20 N 1.30874 * 120.00439 * 355.55651 * 19 17 16 21 21 Si 1.86804 * 119.99783 * 175.55630 * 19 17 16 22 22 H 1.48504 * 109.46852 * 60.00282 * 21 19 17 23 23 H 1.48499 * 109.47070 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47341 * 299.99867 * 21 19 17 25 25 C 1.40873 * 119.66968 * 359.74166 * 16 15 14 26 26 C 1.36372 * 119.83051 * 0.02562 * 25 16 15 27 27 C 1.46853 * 110.99876 * 124.20872 * 2 1 3 28 28 H 1.08998 * 109.47002 * 295.79005 * 1 2 3 29 29 H 1.08992 * 109.47415 * 55.79254 * 1 2 3 30 30 H 1.09008 * 109.47147 * 175.79445 * 1 2 3 31 31 H 1.09004 * 109.46286 * 305.85683 * 3 2 1 32 32 H 1.09004 * 109.46375 * 65.83119 * 3 2 1 33 33 H 1.09002 * 109.50118 * 60.75894 * 4 3 2 34 34 H 1.08995 * 109.50707 * 180.83846 * 4 3 2 35 35 H 1.09005 * 109.52134 * 297.74403 * 5 4 3 36 36 H 1.09000 * 109.52062 * 177.55771 * 5 4 3 37 37 H 1.09002 * 109.46965 * 64.80489 * 8 6 5 38 38 H 1.09000 * 109.47157 * 304.80622 * 8 6 5 39 39 H 0.97003 * 119.99600 * 359.72691 * 9 8 6 40 40 H 0.97001 * 120.00175 * 355.71722 * 12 10 9 41 41 H 1.07997 * 119.91561 * 0.02861 * 14 13 12 42 42 H 1.08001 * 120.09021 * 180.25818 * 15 14 13 43 43 H 0.97003 * 120.00850 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.08281 * 179.97438 * 25 16 15 45 45 H 1.07997 * 119.91692 * 179.97438 * 26 25 16 46 46 H 1.08998 * 109.46148 * 54.14669 * 27 2 1 47 47 H 1.08996 * 109.46208 * 294.17261 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5369 1.0144 6 6 3.5181 -0.8714 1.0209 7 1 3.7813 -1.3842 0.0957 8 6 4.0680 -1.6558 2.2139 9 7 3.5832 -3.0371 2.1555 10 6 3.9421 -3.9182 3.1101 11 8 4.6679 -3.5666 4.0201 12 7 3.4958 -5.1887 3.0567 13 6 3.9371 -6.1216 3.9915 14 6 4.1255 -7.4500 3.6104 15 6 4.5622 -8.3684 4.5191 16 6 4.8128 -7.9746 5.8482 17 6 5.2592 -8.9204 6.7961 18 1 4.9405 -8.8454 7.8253 19 6 6.1145 -9.9550 6.4024 20 7 6.4314 -10.0977 5.1406 21 14 6.8045 -11.1327 7.6777 22 1 5.6870 -11.8318 8.3616 23 1 7.6768 -12.1312 7.0087 24 1 7.5977 -10.3720 8.6762 25 6 4.6150 -6.6322 6.2268 26 6 4.1825 -5.7242 5.3058 27 6 1.9952 -0.7708 1.1338 28 1 -0.3633 0.4471 0.9253 29 1 -0.3634 0.5777 -0.8498 30 1 -0.3634 -1.0250 -0.0754 31 1 1.5634 1.9257 -0.8330 32 1 1.7326 1.8608 0.9377 33 1 3.7813 0.8568 -1.0906 34 1 3.9098 2.3513 -0.1317 35 1 3.8886 1.0354 1.9561 36 1 5.1997 0.4714 0.8905 37 1 3.7309 -1.1913 3.1406 38 1 5.1575 -1.6514 2.1806 39 1 3.0010 -3.3165 1.4317 40 1 2.8671 -5.4533 2.3670 41 1 3.9291 -7.7512 2.5920 42 1 4.7116 -9.3958 4.2216 43 1 7.0248 -10.8149 4.8676 44 1 4.8047 -6.3230 7.2442 45 1 4.0301 -4.6948 5.5946 46 1 1.5634 -1.7715 1.1243 47 1 1.7325 -0.2708 2.0660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108499259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:05 Heat of formation + Delta-G solvation = -32.108340 kcal Electronic energy + Delta-G solvation = -25712.673113 eV Core-core repulsion = 22086.653822 eV Total energy + Delta-G solvation = -3626.019291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45834 -40.16576 -39.15675 -36.55722 -35.95704 -34.77282 -34.16699 -32.11168 -31.43535 -30.53706 -27.83514 -27.32893 -26.18147 -23.89015 -23.42065 -22.78931 -22.33007 -21.66300 -20.68321 -19.40770 -19.07039 -18.22859 -17.05595 -16.83620 -16.62969 -16.25861 -16.09282 -15.69685 -15.51903 -15.49882 -15.15519 -14.84899 -14.51799 -14.20411 -14.01164 -13.82102 -13.75618 -13.55860 -13.24026 -13.18325 -13.07012 -12.84849 -12.75722 -12.46621 -12.38884 -12.04999 -11.83085 -11.63039 -11.45302 -11.37607 -11.29118 -11.21996 -10.99216 -10.64396 -10.07256 -9.43971 -9.31056 -8.66556 -8.47536 -6.29952 0.87226 1.16806 1.40371 1.50036 1.52899 1.78013 2.21867 2.26687 2.83709 2.93567 3.38300 3.70780 3.74588 3.79934 3.88833 4.13985 4.26475 4.41143 4.41777 4.53166 4.54141 4.55673 4.57193 4.66866 4.78298 4.80115 4.82358 4.95394 4.96812 5.02946 5.05987 5.15775 5.16497 5.17914 5.27477 5.35188 5.43871 5.46695 5.52815 5.71649 5.84541 6.05782 6.08778 6.12723 6.14194 6.27823 6.42509 6.70802 6.99383 7.03700 7.17002 7.67195 8.45027 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.038073 B = 0.002052 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.258194 B =13641.410519 C =13858.057438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.551 5.551 3 C 0.051 3.949 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.082 4.082 7 H 0.091 0.909 8 C 0.148 3.852 9 N -0.727 5.727 10 C 0.692 3.308 11 O -0.626 6.626 12 N -0.659 5.659 13 C 0.042 3.958 14 C -0.120 4.120 15 C -0.158 4.158 16 C 0.065 3.935 17 C -0.499 4.499 18 H 0.072 0.928 19 C 0.026 3.974 20 N -0.842 5.842 21 Si 0.988 3.012 22 H -0.258 1.258 23 H -0.268 1.268 24 H -0.266 1.266 25 C -0.220 4.220 26 C -0.098 4.098 27 C 0.062 3.938 28 H 0.022 0.978 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.411 0.589 40 H 0.414 0.586 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.284 0.716 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.511 18.667 -14.276 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.276 5.276 3 C -0.077 4.077 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.101 4.101 7 H 0.109 0.891 8 C 0.023 3.977 9 N -0.384 5.384 10 C 0.393 3.607 11 O -0.506 6.506 12 N -0.307 5.307 13 C -0.052 4.052 14 C -0.141 4.141 15 C -0.178 4.178 16 C 0.062 3.938 17 C -0.530 4.530 18 H 0.090 0.910 19 C -0.185 4.185 20 N -0.470 5.470 21 Si 0.809 3.191 22 H -0.182 1.182 23 H -0.192 1.192 24 H -0.191 1.191 25 C -0.240 4.240 26 C -0.119 4.119 27 C -0.066 4.066 28 H 0.041 0.959 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.248 0.752 40 H 0.251 0.749 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.124 0.876 46 H 0.096 0.904 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.583 18.668 -14.098 24.918 hybrid contribution -0.332 -0.405 0.914 1.053 sum -8.914 18.264 -13.184 24.225 Atomic orbital electron populations 1.22400 0.86463 1.02831 1.00769 1.61945 1.08352 1.14274 1.42981 1.22192 0.96108 0.88744 1.00663 1.21551 0.93918 1.00811 0.98623 1.21574 1.00684 0.93783 0.99285 1.21317 0.94593 0.96649 0.97554 0.89082 1.21223 0.98616 0.79254 0.98579 1.44925 1.54965 1.10559 1.27999 1.16209 0.80350 0.81294 0.82889 1.90888 1.43277 1.78729 1.37717 1.41884 1.48021 1.07497 1.33310 1.17091 1.10749 0.88900 0.88462 1.20533 1.02294 0.92028 0.99213 1.21168 1.02692 0.99623 0.94309 1.18030 0.89989 0.91745 0.94020 1.19673 1.27051 1.09819 0.96420 0.90998 1.26732 0.95356 0.98304 0.98122 1.69820 1.29639 1.29774 1.17812 0.85159 0.78674 0.77203 0.78032 1.18234 1.19244 1.19088 1.20928 1.10672 0.93493 0.98897 1.20517 1.00736 0.98280 0.92324 1.22108 0.94618 0.98586 0.91328 0.95934 0.90336 0.90939 0.89782 0.95294 0.91060 0.89930 0.92064 0.90754 0.92899 0.92424 0.75231 0.74873 0.85695 0.86252 0.90524 0.88722 0.87581 0.90379 0.95507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.59 127.69 1.22 1.49 16 2 N -0.55 -7.60 4.91 -922.60 -4.53 -12.13 16 3 C 0.05 0.60 5.46 86.33 0.47 1.07 16 4 C -0.11 -1.21 6.09 30.65 0.19 -1.02 16 5 C -0.12 -1.50 5.29 30.67 0.16 -1.34 16 6 C -0.08 -1.22 2.39 -10.74 -0.03 -1.24 16 7 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 8 C 0.15 3.15 5.07 86.38 0.44 3.59 16 9 N -0.73 -16.95 5.30 -478.53 -2.54 -19.49 16 10 C 0.69 24.09 8.40 179.06 1.50 25.60 16 11 O -0.63 -28.26 13.76 -4.00 -0.05 -28.31 16 12 N -0.66 -22.41 5.31 -316.78 -1.68 -24.09 16 13 C 0.04 1.88 6.31 38.56 0.24 2.13 16 14 C -0.12 -5.48 9.90 22.13 0.22 -5.26 16 15 C -0.16 -8.38 8.62 22.48 0.19 -8.19 16 16 C 0.06 3.64 5.55 -21.27 -0.12 3.53 16 17 C -0.50 -27.98 9.02 23.39 0.21 -27.77 16 18 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 19 C 0.03 1.38 5.42 85.24 0.46 1.84 16 20 N -0.84 -45.23 10.60 21.82 0.23 -45.00 16 21 Si 0.99 39.89 29.56 68.60 2.03 41.92 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 25 C -0.22 -11.81 9.74 22.48 0.22 -11.59 16 26 C -0.10 -4.91 8.61 22.13 0.19 -4.72 16 27 C 0.06 0.91 4.61 86.32 0.40 1.31 16 28 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 32 H 0.03 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.41 6.73 7.67 -92.71 -0.71 6.02 16 40 H 0.41 10.28 8.83 -92.71 -0.82 9.46 16 41 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 43 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 44 H 0.09 4.90 8.06 -2.91 -0.02 4.88 16 45 H 0.11 5.32 6.22 -2.91 -0.02 5.30 16 46 H 0.08 1.10 7.18 -2.39 -0.02 1.08 16 47 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -69.79 374.85 -1.12 -70.91 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.55 Total: 36.75 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 5.98 Total: -20.57 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -8.52 Total: -100.70 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.05 Total: -28.31 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -69.79 -1.12 -70.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108499259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.804 kcal (2) G-P(sol) polarization free energy of solvation -69.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds