Wall clock time and date at job start Tue Mar 31 2020 11:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00565 * 2 1 4 4 C 1.39710 * 119.99901 * 179.97438 * 2 1 3 5 5 C 1.39019 * 120.00711 * 180.02562 * 4 2 1 6 6 C 1.38203 * 120.22041 * 179.97438 * 5 4 2 7 7 C 1.38026 * 120.22906 * 359.71868 * 6 5 4 8 8 C 1.39573 * 120.00018 * 0.55794 * 7 6 5 9 9 C 1.47867 * 120.10680 * 179.71904 * 8 7 6 10 10 O 1.21558 * 119.99840 * 179.72432 * 9 8 7 11 11 N 1.34774 * 120.00225 * 359.72603 * 9 8 7 12 12 C 1.46496 * 120.00231 * 179.97438 * 11 9 8 13 13 C 1.53349 * 109.40994 * 275.11647 * 12 11 9 14 14 C 1.53189 * 109.15350 * 178.67852 * 13 12 11 15 15 N 1.46931 * 108.89061 * 54.57922 * 14 13 12 16 16 C 1.36938 * 120.62972 * 126.29441 * 15 14 13 17 17 H 1.08005 * 120.00173 * 331.83979 * 16 15 14 18 18 C 1.38813 * 119.99936 * 151.83343 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.08512 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.08402 * 18 16 15 21 21 H 1.48500 * 109.46925 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46793 * 120.00276 * 20 18 16 23 23 H 1.48498 * 109.46814 * 240.00176 * 20 18 16 24 24 C 1.46927 * 118.74004 * 306.32424 * 15 14 13 25 25 C 1.53047 * 109.46223 * 154.99798 * 12 11 9 26 26 C 1.38644 * 120.00094 * 0.02562 * 4 2 1 27 27 H 1.08997 * 109.47552 * 270.00700 * 1 2 3 28 28 H 1.09004 * 109.46947 * 30.00209 * 1 2 3 29 29 H 1.08998 * 109.47173 * 149.99662 * 1 2 3 30 30 H 1.08994 * 109.47247 * 270.00181 * 3 2 1 31 31 H 1.09008 * 109.46797 * 29.99681 * 3 2 1 32 32 H 1.08997 * 109.47461 * 149.99270 * 3 2 1 33 33 H 1.08000 * 119.89076 * 359.94932 * 5 4 2 34 34 H 1.08001 * 119.88623 * 180.02562 * 6 5 4 35 35 H 1.07996 * 120.00214 * 180.29541 * 7 6 5 36 36 H 0.97000 * 119.99973 * 359.97438 * 11 9 8 37 37 H 1.09005 * 109.46233 * 35.02540 * 12 11 9 38 38 H 1.09001 * 109.68292 * 58.71495 * 13 12 11 39 39 H 1.08994 * 109.47524 * 298.52318 * 13 12 11 40 40 H 1.09000 * 109.58714 * 294.72587 * 14 13 12 41 41 H 1.09003 * 109.58688 * 174.43867 * 14 13 12 42 42 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.58255 * 173.39566 * 24 15 14 44 44 H 1.09000 * 109.58150 * 293.67300 * 24 15 14 45 45 H 1.09000 * 109.49464 * 61.42034 * 25 12 11 46 46 H 1.09005 * 109.49328 * 301.32603 * 25 12 11 47 47 H 1.07997 * 120.11334 * 0.04750 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 3.5537 -1.2101 0.0011 6 6 4.2491 -2.4044 0.0022 7 6 3.5682 -3.6050 0.0085 8 6 2.1726 -3.6159 0.0022 9 6 1.4408 -4.9007 0.0028 10 8 0.2252 -4.9078 0.0023 11 7 2.1214 -6.0640 0.0038 12 6 1.3964 -7.3369 0.0049 13 6 1.0321 -7.7146 1.4458 14 6 0.2458 -9.0293 1.4373 15 7 1.0293 -10.0476 0.7246 16 6 1.3096 -11.2513 1.3143 17 1 1.3810 -11.3222 2.3897 18 6 1.5020 -12.3803 0.5300 19 7 1.0984 -12.3880 -0.7227 20 14 2.3339 -13.8889 1.2525 21 1 2.6896 -13.6266 2.6702 22 1 1.4071 -15.0469 1.1812 23 1 3.5656 -14.1923 0.4805 24 6 1.5068 -9.7497 -0.6326 25 6 2.2805 -8.4278 -0.6039 26 6 1.4703 -2.4106 0.0005 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 2.3793 1.5833 -1.0276 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1383 0.5139 33 1 4.0920 -0.2739 0.0003 34 1 5.3291 -2.3983 0.0030 35 1 4.1154 -4.5361 0.0142 36 1 3.0914 -6.0583 0.0039 37 1 0.4854 -7.2365 -0.5851 38 1 0.4208 -6.9280 1.8882 39 1 1.9435 -7.8396 2.0303 40 1 -0.7079 -8.8814 0.9307 41 1 0.0684 -9.3557 2.4621 42 1 1.2332 -13.1768 -1.2709 43 1 2.1637 -10.5503 -0.9727 44 1 0.6560 -9.6631 -1.3084 45 1 3.1803 -8.5459 -0.0002 46 1 2.5577 -8.1464 -1.6199 47 1 0.3903 -2.4128 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110823646.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:18 Heat of formation + Delta-G solvation = 23.322794 kcal Electronic energy + Delta-G solvation = -26182.247166 eV Core-core repulsion = 22558.631550 eV Total energy + Delta-G solvation = -3623.615617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.32192 -39.06628 -37.27950 -36.25604 -34.40860 -32.25647 -31.40201 -30.47870 -29.95487 -29.22117 -28.48441 -25.22691 -25.04493 -23.53124 -22.21375 -21.64842 -21.52432 -19.93419 -19.29769 -18.13775 -16.82966 -16.36496 -16.00752 -15.75326 -15.45813 -15.39983 -14.82832 -14.61441 -14.19693 -13.89561 -13.81839 -13.60294 -13.51157 -12.99035 -12.96841 -12.78699 -12.60518 -12.41421 -12.37899 -12.33272 -11.78136 -11.43538 -11.21415 -11.11254 -10.82389 -10.71984 -10.45464 -10.25061 -10.13086 -10.01458 -9.85998 -9.68707 -9.45279 -9.11593 -8.65307 -8.43791 -7.57394 -6.66481 -5.77974 -3.20100 0.83151 1.36580 2.78388 2.99466 3.37080 3.41942 3.45960 3.48327 3.88216 4.50922 4.56747 4.62602 4.72487 4.88709 4.92683 5.05145 5.06371 5.22040 5.28917 5.35627 5.36054 5.40332 5.45635 5.48465 5.54547 5.62016 5.71893 5.91304 5.98798 6.11006 6.23846 6.28850 6.31479 6.37404 6.50628 6.56881 6.60758 6.62560 6.82667 6.92100 6.95761 7.02678 7.17816 7.34037 7.62234 7.77037 7.82371 8.42871 8.46484 9.22479 9.85737 10.42974 11.30993 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.034148 B = 0.002345 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.759272 B =11937.047374 C =12321.287282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.640 5.640 3 C 0.095 3.905 4 C 0.204 3.796 5 C -0.179 4.179 6 C -0.079 4.079 7 C -0.145 4.145 8 C -0.081 4.081 9 C 0.553 3.447 10 O -0.540 6.540 11 N -0.717 5.717 12 C 0.151 3.849 13 C -0.139 4.139 14 C 0.147 3.853 15 N -0.593 5.593 16 C -0.250 4.250 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.174 3.826 25 C -0.146 4.146 26 C -0.139 4.139 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.396 0.604 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.020 0.980 41 H 0.056 0.944 42 H 0.253 0.747 43 H 0.092 0.908 44 H 0.021 0.979 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.795 26.337 0.099 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.352 5.352 3 C -0.049 4.049 4 C 0.103 3.897 5 C -0.202 4.202 6 C -0.098 4.098 7 C -0.166 4.166 8 C -0.085 4.085 9 C 0.339 3.661 10 O -0.418 6.418 11 N -0.367 5.367 12 C 0.047 3.953 13 C -0.179 4.179 14 C 0.020 3.980 15 N -0.316 5.316 16 C -0.380 4.380 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.048 3.952 25 C -0.186 4.186 26 C -0.162 4.162 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.231 0.769 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.039 0.961 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.807 26.328 -0.009 26.763 hybrid contribution 0.933 -0.700 0.285 1.201 sum 5.740 25.628 0.276 26.264 Atomic orbital electron populations 1.21675 0.79248 1.02892 1.01419 1.46294 1.05109 1.02928 1.80888 1.21618 0.97218 0.84917 1.01100 1.17708 0.91182 0.85654 0.95178 1.20819 0.91974 0.98822 1.08538 1.20813 0.99678 0.91547 0.97757 1.21095 0.92919 0.98440 1.04119 1.19803 0.93574 0.93135 1.02014 1.18309 0.87275 0.83851 0.76642 1.90756 1.13458 1.87652 1.49953 1.46274 1.10240 1.06049 1.74115 1.21136 0.95776 0.80830 0.97522 1.22429 1.00847 0.99028 0.95610 1.20875 0.92617 0.87849 0.96622 1.44102 1.59451 1.13557 1.14478 1.19233 1.42207 0.84969 0.91566 0.91610 1.25061 1.00772 0.97308 0.96632 1.70036 1.48102 1.29012 1.07630 0.86226 0.79089 0.82956 0.78539 1.20267 1.21750 1.21578 1.20743 0.96155 0.92048 0.86302 1.22534 0.99395 0.97627 0.99076 1.20770 1.00522 0.89619 1.05296 0.93213 0.91526 0.90919 0.93419 0.91554 0.91334 0.85802 0.85552 0.85844 0.76947 0.89944 0.92668 0.92309 0.96165 0.92573 0.93668 0.89027 0.96058 0.92145 0.92679 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.19 59.84 0.61 1.28 16 2 N -0.64 -5.53 3.41 -187.59 -0.64 -6.17 16 3 C 0.09 0.54 10.19 59.85 0.61 1.15 16 4 C 0.20 2.17 6.55 -83.83 -0.55 1.62 16 5 C -0.18 -1.65 9.20 -39.30 -0.36 -2.01 16 6 C -0.08 -0.72 10.02 -39.67 -0.40 -1.12 16 7 C -0.15 -1.55 9.54 -39.16 -0.37 -1.92 16 8 C -0.08 -1.08 5.87 -104.99 -0.62 -1.70 16 9 C 0.55 8.88 7.74 -12.32 -0.10 8.79 16 10 O -0.54 -10.56 16.01 5.32 0.09 -10.47 16 11 N -0.72 -10.76 5.03 -54.54 -0.27 -11.04 16 12 C 0.15 2.71 2.42 -67.73 -0.16 2.55 16 13 C -0.14 -2.62 5.68 -26.45 -0.15 -2.77 16 14 C 0.15 3.23 6.50 -3.71 -0.02 3.21 16 15 N -0.59 -14.98 2.99 -172.32 -0.52 -15.50 16 16 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 17 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 18 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 19 N -0.90 -26.21 11.20 55.49 0.62 -25.58 16 20 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 25 C -0.15 -2.72 5.55 -26.61 -0.15 -2.87 16 26 C -0.14 -1.76 8.75 -38.96 -0.34 -2.10 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 29 H 0.07 0.60 6.19 -51.93 -0.32 0.27 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.28 8.07 -51.92 -0.42 -0.14 16 32 H 0.07 0.34 6.19 -51.93 -0.32 0.02 16 33 H 0.12 0.86 6.13 -52.49 -0.32 0.54 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.12 1.10 6.40 -52.49 -0.34 0.76 16 36 H 0.40 4.85 6.63 -40.82 -0.27 4.58 16 37 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.14 1.78 5.73 -52.49 -0.30 1.48 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -32.69 371.91 -9.58 -42.27 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.18 Total: 3.16 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.25 Total: 1.11 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.81 Total: -58.29 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.69 -9.58 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823646.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.592 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds