Wall clock time and date at job start Tue Mar 31 2020 11:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00565 * 2 1 4 4 C 1.39710 * 119.99901 * 179.97438 * 2 1 3 5 5 C 1.39019 * 120.00711 * 180.02562 * 4 2 1 6 6 C 1.38203 * 120.22041 * 179.97438 * 5 4 2 7 7 C 1.38026 * 120.22906 * 359.71868 * 6 5 4 8 8 C 1.39573 * 120.00018 * 0.55794 * 7 6 5 9 9 C 1.47867 * 120.10680 * 179.71904 * 8 7 6 10 10 O 1.21558 * 119.99840 * 179.72432 * 9 8 7 11 11 N 1.34774 * 120.00225 * 359.72603 * 9 8 7 12 12 C 1.46496 * 120.00231 * 179.97438 * 11 9 8 13 13 C 1.53349 * 109.40994 * 275.11647 * 12 11 9 14 14 C 1.53189 * 109.15350 * 178.67852 * 13 12 11 15 15 N 1.46931 * 108.89061 * 54.57922 * 14 13 12 16 16 C 1.36938 * 120.62972 * 126.29441 * 15 14 13 17 17 H 1.08005 * 120.00173 * 331.83979 * 16 15 14 18 18 C 1.38813 * 119.99936 * 151.83343 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.08512 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.08402 * 18 16 15 21 21 H 1.48500 * 109.46925 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46793 * 120.00276 * 20 18 16 23 23 H 1.48498 * 109.46814 * 240.00176 * 20 18 16 24 24 C 1.46927 * 118.74004 * 306.32424 * 15 14 13 25 25 C 1.53047 * 109.46223 * 154.99798 * 12 11 9 26 26 C 1.38644 * 120.00094 * 0.02562 * 4 2 1 27 27 H 1.08997 * 109.47552 * 270.00700 * 1 2 3 28 28 H 1.09004 * 109.46947 * 30.00209 * 1 2 3 29 29 H 1.08998 * 109.47173 * 149.99662 * 1 2 3 30 30 H 1.08994 * 109.47247 * 270.00181 * 3 2 1 31 31 H 1.09008 * 109.46797 * 29.99681 * 3 2 1 32 32 H 1.08997 * 109.47461 * 149.99270 * 3 2 1 33 33 H 1.08000 * 119.89076 * 359.94932 * 5 4 2 34 34 H 1.08001 * 119.88623 * 180.02562 * 6 5 4 35 35 H 1.07996 * 120.00214 * 180.29541 * 7 6 5 36 36 H 0.97000 * 119.99973 * 359.97438 * 11 9 8 37 37 H 1.09005 * 109.46233 * 35.02540 * 12 11 9 38 38 H 1.09001 * 109.68292 * 58.71495 * 13 12 11 39 39 H 1.08994 * 109.47524 * 298.52318 * 13 12 11 40 40 H 1.09000 * 109.58714 * 294.72587 * 14 13 12 41 41 H 1.09003 * 109.58688 * 174.43867 * 14 13 12 42 42 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.58255 * 173.39566 * 24 15 14 44 44 H 1.09000 * 109.58150 * 293.67300 * 24 15 14 45 45 H 1.09000 * 109.49464 * 61.42034 * 25 12 11 46 46 H 1.09005 * 109.49328 * 301.32603 * 25 12 11 47 47 H 1.07997 * 120.11334 * 0.04750 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 3.5537 -1.2101 0.0011 6 6 4.2491 -2.4044 0.0022 7 6 3.5682 -3.6050 0.0085 8 6 2.1726 -3.6159 0.0022 9 6 1.4408 -4.9007 0.0028 10 8 0.2252 -4.9078 0.0023 11 7 2.1214 -6.0640 0.0038 12 6 1.3964 -7.3369 0.0049 13 6 1.0321 -7.7146 1.4458 14 6 0.2458 -9.0293 1.4373 15 7 1.0293 -10.0476 0.7246 16 6 1.3096 -11.2513 1.3143 17 1 1.3810 -11.3222 2.3897 18 6 1.5020 -12.3803 0.5300 19 7 1.0984 -12.3880 -0.7227 20 14 2.3339 -13.8889 1.2525 21 1 2.6896 -13.6266 2.6702 22 1 1.4071 -15.0469 1.1812 23 1 3.5656 -14.1923 0.4805 24 6 1.5068 -9.7497 -0.6326 25 6 2.2805 -8.4278 -0.6039 26 6 1.4703 -2.4106 0.0005 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 2.3793 1.5833 -1.0276 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1383 0.5139 33 1 4.0920 -0.2739 0.0003 34 1 5.3291 -2.3983 0.0030 35 1 4.1154 -4.5361 0.0142 36 1 3.0914 -6.0583 0.0039 37 1 0.4854 -7.2365 -0.5851 38 1 0.4208 -6.9280 1.8882 39 1 1.9435 -7.8396 2.0303 40 1 -0.7079 -8.8814 0.9307 41 1 0.0684 -9.3557 2.4621 42 1 1.2332 -13.1768 -1.2709 43 1 2.1637 -10.5503 -0.9727 44 1 0.6560 -9.6631 -1.3084 45 1 3.1803 -8.5459 -0.0002 46 1 2.5577 -8.1464 -1.6199 47 1 0.3903 -2.4128 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110823646.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:18 Heat of formation + Delta-G solvation = 3.350394 kcal Electronic energy + Delta-G solvation = -26183.113235 eV Core-core repulsion = 22558.631550 eV Total energy + Delta-G solvation = -3624.481685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.39380 -40.11849 -38.87416 -37.00543 -36.04335 -33.99721 -32.41966 -31.80797 -31.37567 -30.60247 -29.10568 -27.01686 -25.71494 -24.83944 -23.91088 -23.16159 -22.34199 -21.23368 -20.78044 -19.23343 -18.58649 -17.47183 -17.13146 -16.79108 -16.51708 -16.33981 -16.11623 -15.85257 -15.62703 -15.36476 -15.05528 -14.80212 -14.68155 -14.56153 -14.33276 -14.08875 -13.44717 -13.39187 -13.21649 -13.15729 -13.03202 -12.95661 -12.63931 -12.57807 -12.41948 -12.23872 -12.00539 -11.97231 -11.88300 -11.57210 -11.38406 -10.94858 -10.84160 -10.56961 -10.12834 -9.84834 -8.71691 -8.25777 -7.87987 -5.34005 -0.07220 0.59740 1.48043 1.49741 1.60804 1.91330 2.05204 2.30044 2.52002 2.98100 3.27884 3.61652 3.69857 3.88568 3.93845 4.03052 4.09029 4.24843 4.29765 4.33576 4.39567 4.44773 4.50192 4.56620 4.63191 4.70192 4.78548 4.80122 4.84166 4.85817 4.92183 4.98353 5.01839 5.03743 5.13468 5.24067 5.28213 5.42377 5.45866 5.50684 5.54386 5.64465 5.70397 5.81475 6.30036 6.38740 6.48681 6.57639 7.14020 7.21381 7.83072 8.36570 9.19437 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.034148 B = 0.002345 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.759272 B =11937.047374 C =12321.287282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.645 5.645 3 C 0.089 3.911 4 C 0.197 3.803 5 C -0.173 4.173 6 C -0.074 4.074 7 C -0.146 4.146 8 C -0.103 4.103 9 C 0.551 3.449 10 O -0.585 6.585 11 N -0.703 5.703 12 C 0.161 3.839 13 C -0.124 4.124 14 C 0.145 3.855 15 N -0.609 5.609 16 C -0.262 4.262 17 H 0.068 0.932 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.266 1.266 22 H -0.294 1.294 23 H -0.287 1.287 24 C 0.178 3.822 25 C -0.128 4.128 26 C -0.162 4.162 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.142 0.858 36 H 0.413 0.587 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.007 0.993 41 H 0.058 0.942 42 H 0.251 0.749 43 H 0.065 0.935 44 H -0.006 1.006 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 28.544 0.836 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.357 5.357 3 C -0.053 4.053 4 C 0.094 3.906 5 C -0.195 4.195 6 C -0.092 4.092 7 C -0.167 4.167 8 C -0.106 4.106 9 C 0.340 3.660 10 O -0.466 6.466 11 N -0.354 5.354 12 C 0.057 3.943 13 C -0.164 4.164 14 C 0.019 3.981 15 N -0.333 5.333 16 C -0.392 4.392 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.798 3.202 21 H -0.191 1.191 22 H -0.222 1.222 23 H -0.213 1.213 24 C 0.052 3.948 25 C -0.168 4.168 26 C -0.185 4.185 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.170 0.830 34 H 0.179 0.821 35 H 0.159 0.841 36 H 0.251 0.749 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.025 0.975 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.012 0.988 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.741 28.586 0.742 29.625 hybrid contribution -0.026 -1.266 0.051 1.268 sum 7.714 27.320 0.794 28.399 Atomic orbital electron populations 1.21727 0.79106 1.03167 1.01528 1.46559 1.05578 1.03320 1.80212 1.21827 0.97670 0.83812 1.01992 1.17867 0.92065 0.85665 0.94972 1.21215 0.91317 1.00281 1.06689 1.21219 1.01346 0.90628 0.95997 1.21324 0.91655 1.00163 1.03541 1.19625 0.94704 0.91481 1.04830 1.18820 0.86893 0.84891 0.75359 1.90729 1.15546 1.88295 1.52043 1.45969 1.10938 1.04697 1.73828 1.20759 0.95065 0.82067 0.96440 1.22226 1.00687 0.97088 0.96372 1.20955 0.92300 0.88723 0.96160 1.44359 1.60210 1.13738 1.14952 1.19550 1.41801 0.85978 0.91871 0.91457 1.25845 1.01572 1.00160 0.97061 1.70193 1.49402 1.29688 1.08919 0.85169 0.77701 0.79043 0.78276 1.19054 1.22165 1.21318 1.20569 0.95128 0.93860 0.85223 1.22260 0.98819 0.94828 1.00849 1.20735 0.99932 0.90707 1.07173 0.93206 0.89313 0.92577 0.92623 0.90051 0.90320 0.83004 0.82134 0.84062 0.74919 0.92500 0.92416 0.91316 0.97550 0.92304 0.93993 0.91674 0.98774 0.90844 0.90420 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 10.19 127.77 1.30 2.55 16 2 N -0.64 -10.11 3.41 -747.42 -2.55 -12.65 16 3 C 0.09 0.75 10.19 127.77 1.30 2.05 16 4 C 0.20 3.89 6.55 38.17 0.25 4.14 16 5 C -0.17 -2.60 9.20 22.45 0.21 -2.39 16 6 C -0.07 -1.05 10.02 22.21 0.22 -0.83 16 7 C -0.15 -2.75 9.54 22.54 0.21 -2.53 16 8 C -0.10 -2.67 5.87 -20.10 -0.12 -2.79 16 9 C 0.55 17.84 7.74 86.79 0.67 18.51 16 10 O -0.58 -23.84 16.01 -3.90 -0.06 -23.91 16 11 N -0.70 -20.43 5.03 -444.75 -2.24 -22.66 16 12 C 0.16 5.78 2.42 45.12 0.11 5.89 16 13 C -0.12 -4.63 5.68 30.77 0.17 -4.46 16 14 C 0.14 6.47 6.50 86.36 0.56 7.03 16 15 N -0.61 -31.32 2.99 -699.08 -2.09 -33.41 16 16 C -0.26 -14.53 9.58 84.03 0.81 -13.72 16 17 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 18 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 19 N -0.94 -55.63 11.20 21.65 0.24 -55.39 16 20 Si 0.97 44.78 29.59 68.60 2.03 46.81 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 24 C 0.18 8.67 5.30 86.36 0.46 9.13 16 25 C -0.13 -4.67 5.55 30.67 0.17 -4.50 16 26 C -0.16 -4.14 8.75 22.67 0.20 -3.94 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.09 0.83 8.07 -2.39 -0.02 0.82 16 29 H 0.06 0.98 6.19 -2.39 -0.01 0.97 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.08 0.45 8.07 -2.38 -0.02 0.43 16 32 H 0.08 0.50 6.19 -2.39 -0.01 0.49 16 33 H 0.15 1.40 6.13 -2.91 -0.02 1.38 16 34 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.14 2.03 6.40 -2.91 -0.02 2.02 16 36 H 0.41 9.14 6.63 -92.71 -0.61 8.52 16 37 H 0.06 2.37 7.58 -2.38 -0.02 2.35 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.06 2.55 7.93 -2.39 -0.02 2.53 16 42 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.06 3.51 6.06 -2.39 -0.01 3.50 16 44 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 47 H 0.12 3.31 5.73 -2.91 -0.02 3.30 16 Total: -1.00 -73.18 371.91 2.64 -70.54 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.36 Total: 18.97 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 6.95 Total: 11.70 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -6.63 Total: -124.12 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.06 Total: -23.91 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -73.18 2.64 -70.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823646.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.891 kcal (2) G-P(sol) polarization free energy of solvation -73.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds