Wall clock time and date at job start Tue Mar 31 2020 11:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00404 * 2 1 4 4 C 1.39055 * 119.99487 * 180.02562 * 2 1 3 5 5 C 1.39219 * 119.92580 * 179.72511 * 4 2 1 6 6 C 1.37617 * 120.06605 * 179.72171 * 5 4 2 7 7 C 1.39793 * 119.92581 * 0.54862 * 6 5 4 8 8 C 1.47524 * 120.06709 * 179.69961 * 7 6 5 9 9 O 1.21594 * 120.00264 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00005 * 0.02953 * 8 7 6 11 11 C 1.46493 * 120.00299 * 179.97438 * 10 8 7 12 12 C 1.53046 * 109.46114 * 275.02541 * 11 10 8 13 13 C 1.53194 * 109.31387 * 178.60128 * 12 11 10 14 14 N 1.46919 * 108.76808 * 54.65439 * 13 12 11 15 15 C 1.36935 * 120.63488 * 126.36057 * 14 13 12 16 16 H 1.07998 * 119.99605 * 331.86860 * 15 14 13 17 17 C 1.38809 * 120.00440 * 151.86374 * 15 14 13 18 18 N 1.31627 * 119.99796 * 343.06340 * 17 15 14 19 19 Si 1.86793 * 120.00368 * 163.06701 * 17 15 14 20 20 H 1.48508 * 109.46861 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47730 * 119.99911 * 19 17 15 22 22 H 1.48505 * 109.47226 * 240.00253 * 19 17 15 23 23 C 1.46933 * 118.73646 * 306.38574 * 14 13 12 24 24 C 1.53044 * 109.46486 * 154.97028 * 11 10 8 25 25 C 1.39791 * 119.86785 * 359.72899 * 7 6 5 26 26 C 1.37604 * 119.93120 * 359.97438 * 25 7 6 27 27 H 1.08997 * 109.47668 * 239.99974 * 1 2 3 28 28 H 1.09006 * 109.46814 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47317 * 119.99748 * 1 2 3 30 30 H 1.09000 * 109.47203 * 269.99994 * 3 2 1 31 31 H 1.09001 * 109.46991 * 30.00121 * 3 2 1 32 32 H 1.08995 * 109.47061 * 149.99954 * 3 2 1 33 33 H 1.07995 * 119.97205 * 359.97438 * 5 4 2 34 34 H 1.07995 * 120.03612 * 180.25933 * 6 5 4 35 35 H 0.97007 * 119.99775 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.45982 * 34.99523 * 11 10 8 37 37 H 1.08999 * 109.49911 * 298.56545 * 12 11 10 38 38 H 1.08999 * 109.49307 * 58.66034 * 12 11 10 39 39 H 1.09004 * 109.59516 * 294.86489 * 13 12 11 40 40 H 1.08995 * 109.70405 * 174.50916 * 13 12 11 41 41 H 0.96999 * 119.99953 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.58516 * 293.82025 * 23 14 13 43 43 H 1.09004 * 109.69845 * 173.46402 * 23 14 13 44 44 H 1.08996 * 109.49179 * 301.33988 * 24 11 10 45 45 H 1.09001 * 109.49441 * 61.43215 * 24 11 10 46 46 H 1.08001 * 120.03655 * 179.97438 * 25 7 6 47 47 H 1.08001 * 119.97227 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1601 -1.2043 -0.0005 5 6 3.5523 -1.2026 -0.0063 6 6 4.2432 -2.3928 -0.0011 7 6 3.5456 -3.6042 -0.0015 8 6 4.2831 -4.8818 -0.0026 9 8 3.6751 -5.9349 -0.0035 10 7 5.6309 -4.8819 -0.0026 11 6 6.3633 -6.1506 -0.0031 12 6 6.5088 -6.6560 1.4342 13 6 7.2443 -7.9998 1.4267 14 7 8.5180 -7.8375 0.7127 15 6 9.6992 -8.2042 1.3006 16 1 9.7975 -8.1798 2.3758 17 6 10.7700 -8.6073 0.5147 18 7 10.5713 -8.9583 -0.7383 19 14 12.4929 -8.6516 1.2350 20 1 12.4479 -8.2124 2.6530 21 1 13.0247 -10.0361 1.1618 22 1 13.3758 -7.7407 0.4630 23 6 8.5005 -7.2738 -0.6441 24 6 7.7507 -5.9383 -0.6135 25 6 2.1477 -3.6025 -0.0016 26 6 1.4626 -2.4092 -0.0007 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 2.3793 1.5833 -1.0277 31 1 1.6085 2.0283 0.5139 32 1 3.1499 1.1383 0.5138 33 1 4.0907 -0.2665 -0.0108 34 1 5.3232 -2.3909 -0.0014 35 1 6.1160 -4.0419 -0.0022 36 1 5.8158 -6.8858 -0.5929 37 1 7.0778 -5.9328 2.0183 38 1 5.5208 -6.7847 1.8762 39 1 6.6342 -8.7478 0.9203 40 1 7.4376 -8.3186 2.4509 41 1 11.3196 -9.2396 -1.2876 42 1 7.9928 -7.9625 -1.3193 43 1 9.5221 -7.1115 -0.9877 44 1 7.6466 -5.5561 -1.6289 45 1 8.3079 -5.2219 -0.0098 46 1 1.6060 -4.5368 -0.0024 47 1 0.3826 -2.4071 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110824037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:22 Heat of formation + Delta-G solvation = 20.530762 kcal Electronic energy + Delta-G solvation = -26035.718724 eV Core-core repulsion = 22411.982036 eV Total energy + Delta-G solvation = -3623.736688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.27340 -39.11766 -37.30889 -36.18553 -34.36824 -32.24325 -31.36545 -30.62747 -29.93972 -29.13353 -28.54500 -25.84769 -24.75029 -22.58753 -22.47196 -22.11214 -21.33730 -19.94634 -19.32111 -18.10834 -17.05746 -16.56675 -16.20430 -15.53324 -15.44345 -15.07213 -14.79419 -14.54028 -14.11648 -13.87973 -13.78057 -13.58644 -13.48967 -13.11397 -12.98014 -12.78627 -12.70410 -12.44534 -12.37656 -12.33662 -12.22147 -11.41019 -11.09335 -11.05404 -10.79325 -10.70534 -10.42959 -10.22872 -10.09903 -9.99094 -9.80604 -9.64035 -9.39790 -9.18115 -8.62690 -8.42256 -7.62413 -6.64645 -5.76517 -3.18546 0.98157 1.27232 2.69482 3.04322 3.38348 3.46567 3.48969 3.51507 3.93623 4.49887 4.51450 4.52092 4.70825 4.79515 4.88831 4.95413 5.12114 5.17088 5.21914 5.25037 5.33417 5.37938 5.41721 5.48805 5.56808 5.66267 5.82671 5.94729 5.95643 6.10798 6.14639 6.33827 6.35333 6.41134 6.53665 6.59227 6.64682 6.66574 6.81832 6.85572 7.01265 7.05356 7.09866 7.36122 7.64687 7.81718 7.87452 8.47790 8.54880 9.23977 9.87350 10.44725 11.32408 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030976 B = 0.002283 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.712803 B =12262.925916 C =12725.768715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.634 5.634 3 C 0.090 3.910 4 C 0.233 3.767 5 C -0.207 4.207 6 C -0.036 4.036 7 C -0.191 4.191 8 C 0.559 3.441 9 O -0.548 6.548 10 N -0.722 5.722 11 C 0.152 3.848 12 C -0.139 4.139 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.249 4.249 16 H 0.066 0.934 17 C 0.000 4.000 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.174 3.826 24 C -0.147 4.147 25 C -0.011 4.011 26 C -0.206 4.206 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.393 0.607 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.056 0.944 41 H 0.253 0.747 42 H 0.021 0.979 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.135 0.865 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.302 21.837 0.221 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.344 5.344 3 C -0.053 4.053 4 C 0.130 3.870 5 C -0.229 4.229 6 C -0.056 4.056 7 C -0.196 4.196 8 C 0.347 3.653 9 O -0.427 6.427 10 N -0.372 5.372 11 C 0.048 3.952 12 C -0.179 4.179 13 C 0.021 3.979 14 N -0.316 5.316 15 C -0.379 4.379 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.048 3.952 24 C -0.186 4.186 25 C -0.031 4.031 26 C -0.229 4.229 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.227 0.773 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.152 0.848 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.695 21.185 0.114 28.255 hybrid contribution 1.126 0.522 0.275 1.271 sum -17.569 21.707 0.389 27.929 Atomic orbital electron populations 1.21655 0.79258 1.02539 1.01556 1.46282 1.05280 1.03387 1.79437 1.21724 0.97494 0.84703 1.01408 1.17995 0.91301 0.85712 0.91999 1.20578 0.91926 0.98586 1.11855 1.21059 0.99419 0.91245 0.93837 1.19798 0.94285 0.92925 1.12567 1.18181 0.82284 0.88691 0.76174 1.90755 1.68302 1.32925 1.50672 1.46251 1.05945 1.10187 1.74815 1.21030 0.92358 0.84364 0.97425 1.22371 0.99758 1.00000 0.95759 1.20877 0.87775 0.92721 0.96573 1.44102 1.01375 1.71595 1.14525 1.19233 0.88927 1.38190 0.91562 0.91622 1.25061 0.99144 0.98979 0.96639 1.70042 1.29959 1.47231 1.07565 0.86226 0.84814 0.77246 0.78516 1.20280 1.21758 1.21606 1.20736 0.99985 0.88201 0.86301 1.22534 0.94558 1.02528 0.99028 1.21009 0.92757 0.97927 0.91364 1.20586 0.99737 0.90685 1.11879 0.92506 0.90808 0.92503 0.93146 0.91426 0.91014 0.85554 0.85664 0.77251 0.90009 0.92391 0.92695 0.96171 0.92590 0.93688 0.96105 0.89060 0.92751 0.92233 0.84751 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 9.38 59.85 0.56 1.03 16 2 N -0.63 -4.57 3.39 -187.55 -0.64 -5.21 16 3 C 0.09 0.44 10.14 59.85 0.61 1.05 16 4 C 0.23 2.22 6.55 -83.85 -0.55 1.67 16 5 C -0.21 -1.95 9.18 -39.44 -0.36 -2.31 16 6 C -0.04 -0.38 9.53 -39.23 -0.37 -0.76 16 7 C -0.19 -2.52 5.88 -104.95 -0.62 -3.13 16 8 C 0.56 9.10 7.73 -12.47 -0.10 9.00 16 9 O -0.55 -10.92 16.00 5.28 0.08 -10.83 16 10 N -0.72 -11.00 5.03 -54.81 -0.28 -11.28 16 11 C 0.15 2.77 2.42 -67.89 -0.16 2.61 16 12 C -0.14 -2.65 5.65 -26.61 -0.15 -2.80 16 13 C 0.15 3.27 6.52 -3.71 -0.02 3.24 16 14 N -0.59 -15.09 2.99 -172.32 -0.52 -15.61 16 15 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 16 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 17 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 18 N -0.90 -26.34 11.20 55.49 0.62 -25.72 16 19 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 C 0.17 4.17 5.30 -3.71 -0.02 4.15 16 24 C -0.15 -2.76 5.55 -26.61 -0.15 -2.91 16 25 C -0.01 -0.13 9.58 -39.23 -0.38 -0.51 16 26 C -0.21 -2.08 9.28 -39.45 -0.37 -2.44 16 27 H 0.06 0.28 7.93 -51.93 -0.41 -0.14 16 28 H 0.07 0.23 7.80 -51.93 -0.40 -0.18 16 29 H 0.06 0.28 7.93 -51.93 -0.41 -0.13 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.22 7.92 -51.93 -0.41 -0.19 16 32 H 0.07 0.34 6.18 -51.93 -0.32 0.02 16 33 H 0.13 0.92 6.12 -52.49 -0.32 0.60 16 34 H 0.13 1.09 6.39 -52.49 -0.34 0.76 16 35 H 0.39 4.87 6.62 -40.82 -0.27 4.60 16 36 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.13 1.67 7.64 -52.49 -0.40 1.27 16 47 H 0.13 1.01 6.70 -52.49 -0.35 0.66 16 LS Contribution 372.67 15.07 5.62 5.62 Total: -1.00 -33.24 372.67 -9.71 -42.95 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.27 Total: 2.61 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.31 Total: 0.75 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.81 Total: -57.81 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.24 -9.71 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.483 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds