Wall clock time and date at job start Tue Mar 31 2020 11:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00404 * 2 1 4 4 C 1.39055 * 119.99487 * 180.02562 * 2 1 3 5 5 C 1.39219 * 119.92580 * 179.72511 * 4 2 1 6 6 C 1.37617 * 120.06605 * 179.72171 * 5 4 2 7 7 C 1.39793 * 119.92581 * 0.54862 * 6 5 4 8 8 C 1.47524 * 120.06709 * 179.69961 * 7 6 5 9 9 O 1.21594 * 120.00264 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00005 * 0.02953 * 8 7 6 11 11 C 1.46493 * 120.00299 * 179.97438 * 10 8 7 12 12 C 1.53046 * 109.46114 * 275.02541 * 11 10 8 13 13 C 1.53194 * 109.31387 * 178.60128 * 12 11 10 14 14 N 1.46919 * 108.76808 * 54.65439 * 13 12 11 15 15 C 1.36935 * 120.63488 * 126.36057 * 14 13 12 16 16 H 1.07998 * 119.99605 * 331.86860 * 15 14 13 17 17 C 1.38809 * 120.00440 * 151.86374 * 15 14 13 18 18 N 1.31627 * 119.99796 * 343.06340 * 17 15 14 19 19 Si 1.86793 * 120.00368 * 163.06701 * 17 15 14 20 20 H 1.48508 * 109.46861 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47730 * 119.99911 * 19 17 15 22 22 H 1.48505 * 109.47226 * 240.00253 * 19 17 15 23 23 C 1.46933 * 118.73646 * 306.38574 * 14 13 12 24 24 C 1.53044 * 109.46486 * 154.97028 * 11 10 8 25 25 C 1.39791 * 119.86785 * 359.72899 * 7 6 5 26 26 C 1.37604 * 119.93120 * 359.97438 * 25 7 6 27 27 H 1.08997 * 109.47668 * 239.99974 * 1 2 3 28 28 H 1.09006 * 109.46814 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47317 * 119.99748 * 1 2 3 30 30 H 1.09000 * 109.47203 * 269.99994 * 3 2 1 31 31 H 1.09001 * 109.46991 * 30.00121 * 3 2 1 32 32 H 1.08995 * 109.47061 * 149.99954 * 3 2 1 33 33 H 1.07995 * 119.97205 * 359.97438 * 5 4 2 34 34 H 1.07995 * 120.03612 * 180.25933 * 6 5 4 35 35 H 0.97007 * 119.99775 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.45982 * 34.99523 * 11 10 8 37 37 H 1.08999 * 109.49911 * 298.56545 * 12 11 10 38 38 H 1.08999 * 109.49307 * 58.66034 * 12 11 10 39 39 H 1.09004 * 109.59516 * 294.86489 * 13 12 11 40 40 H 1.08995 * 109.70405 * 174.50916 * 13 12 11 41 41 H 0.96999 * 119.99953 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.58516 * 293.82025 * 23 14 13 43 43 H 1.09004 * 109.69845 * 173.46402 * 23 14 13 44 44 H 1.08996 * 109.49179 * 301.33988 * 24 11 10 45 45 H 1.09001 * 109.49441 * 61.43215 * 24 11 10 46 46 H 1.08001 * 120.03655 * 179.97438 * 25 7 6 47 47 H 1.08001 * 119.97227 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1601 -1.2043 -0.0005 5 6 3.5523 -1.2026 -0.0063 6 6 4.2432 -2.3928 -0.0011 7 6 3.5456 -3.6042 -0.0015 8 6 4.2831 -4.8818 -0.0026 9 8 3.6751 -5.9349 -0.0035 10 7 5.6309 -4.8819 -0.0026 11 6 6.3633 -6.1506 -0.0031 12 6 6.5088 -6.6560 1.4342 13 6 7.2443 -7.9998 1.4267 14 7 8.5180 -7.8375 0.7127 15 6 9.6992 -8.2042 1.3006 16 1 9.7975 -8.1798 2.3758 17 6 10.7700 -8.6073 0.5147 18 7 10.5713 -8.9583 -0.7383 19 14 12.4929 -8.6516 1.2350 20 1 12.4479 -8.2124 2.6530 21 1 13.0247 -10.0361 1.1618 22 1 13.3758 -7.7407 0.4630 23 6 8.5005 -7.2738 -0.6441 24 6 7.7507 -5.9383 -0.6135 25 6 2.1477 -3.6025 -0.0016 26 6 1.4626 -2.4092 -0.0007 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 2.3793 1.5833 -1.0277 31 1 1.6085 2.0283 0.5139 32 1 3.1499 1.1383 0.5138 33 1 4.0907 -0.2665 -0.0108 34 1 5.3232 -2.3909 -0.0014 35 1 6.1160 -4.0419 -0.0022 36 1 5.8158 -6.8858 -0.5929 37 1 7.0778 -5.9328 2.0183 38 1 5.5208 -6.7847 1.8762 39 1 6.6342 -8.7478 0.9203 40 1 7.4376 -8.3186 2.4509 41 1 11.3196 -9.2396 -1.2876 42 1 7.9928 -7.9625 -1.3193 43 1 9.5221 -7.1115 -0.9877 44 1 7.6466 -5.5561 -1.6289 45 1 8.3079 -5.2219 -0.0098 46 1 1.6060 -4.5368 -0.0024 47 1 0.3826 -2.4071 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110824037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:21 Heat of formation + Delta-G solvation = 0.101108 kcal Electronic energy + Delta-G solvation = -26036.604620 eV Core-core repulsion = 22411.982036 eV Total energy + Delta-G solvation = -3624.622585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31315 -40.15720 -38.88526 -36.95362 -36.00854 -33.98630 -32.28449 -31.88056 -31.50934 -30.56603 -29.00004 -27.15797 -26.08918 -24.07403 -23.78821 -23.21012 -22.53760 -21.20419 -20.83467 -19.23337 -18.56560 -17.69800 -17.33607 -16.80879 -16.34657 -16.06965 -15.96482 -15.84992 -15.56096 -15.35088 -15.04907 -14.75645 -14.57694 -14.44534 -14.30003 -14.07131 -13.50216 -13.39758 -13.35556 -13.18542 -13.01759 -12.94693 -12.80383 -12.62146 -12.50606 -12.21871 -11.99470 -11.87451 -11.76094 -11.55529 -11.36012 -10.87197 -10.82359 -10.56376 -10.00014 -9.96816 -8.70965 -8.28677 -7.87388 -5.33433 0.08884 0.49566 1.48224 1.49808 1.61003 1.97545 2.17805 2.25196 2.52398 3.00451 3.28368 3.65069 3.81184 3.83923 3.97688 3.99096 4.07649 4.18524 4.33151 4.37311 4.40935 4.46171 4.52679 4.61324 4.64716 4.69681 4.78959 4.81846 4.85723 4.91073 4.92768 5.02398 5.05600 5.08363 5.15343 5.23735 5.28684 5.34384 5.46528 5.50878 5.58930 5.65073 5.71305 5.77004 6.27314 6.39240 6.43818 6.66403 7.14477 7.32751 7.83647 8.37330 9.20010 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030976 B = 0.002283 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.712803 B =12262.925916 C =12725.768715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.632 5.632 3 C 0.082 3.918 4 C 0.237 3.763 5 C -0.209 4.209 6 C -0.030 4.030 7 C -0.219 4.219 8 C 0.557 3.443 9 O -0.594 6.594 10 N -0.710 5.710 11 C 0.162 3.838 12 C -0.123 4.123 13 C 0.145 3.855 14 N -0.609 5.609 15 C -0.262 4.262 16 H 0.068 0.932 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.294 1.294 22 H -0.287 1.287 23 C 0.179 3.821 24 C -0.128 4.128 25 C -0.023 4.023 26 C -0.211 4.211 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.410 0.590 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.006 0.994 40 H 0.059 0.941 41 H 0.251 0.749 42 H -0.007 1.007 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.120 0.880 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.647 25.540 0.990 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.340 5.340 3 C -0.061 4.061 4 C 0.130 3.870 5 C -0.231 4.231 6 C -0.050 4.050 7 C -0.224 4.224 8 C 0.348 3.652 9 O -0.477 6.477 10 N -0.360 5.360 11 C 0.058 3.942 12 C -0.163 4.163 13 C 0.019 3.981 14 N -0.332 5.332 15 C -0.392 4.392 16 H 0.086 0.914 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.799 3.201 20 H -0.190 1.190 21 H -0.222 1.222 22 H -0.213 1.213 23 C 0.052 3.948 24 C -0.168 4.168 25 C -0.043 4.043 26 C -0.233 4.233 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.170 0.830 34 H 0.162 0.838 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.024 0.976 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.012 0.988 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.138 0.862 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.066 24.968 0.896 31.428 hybrid contribution 1.081 -0.532 0.030 1.205 sum -17.985 24.437 0.925 30.356 Atomic orbital electron populations 1.21851 0.78039 1.04188 1.01681 1.46613 1.06334 1.03355 1.77716 1.21942 0.97908 0.83980 1.02221 1.18196 0.91745 0.86435 0.90594 1.20860 0.92049 0.99116 1.11115 1.21233 1.00369 0.90579 0.92798 1.19585 0.94459 0.92168 1.16225 1.18696 0.82241 0.89354 0.74897 1.90725 1.69141 1.34861 1.52949 1.45948 1.05773 1.09705 1.74619 1.20650 0.91957 0.85313 0.96325 1.22168 0.99353 0.98296 0.96518 1.20958 0.86758 0.94284 0.96122 1.44358 1.01888 1.72014 1.14989 1.19553 0.89924 1.37813 0.91878 0.91447 1.25851 1.02781 0.99010 0.97063 1.70201 1.30781 1.48391 1.08864 0.85162 0.79954 0.76759 0.78268 1.19042 1.22158 1.21334 1.20565 0.98817 0.90147 0.85233 1.22260 0.94101 0.99620 1.00784 1.21005 0.92710 0.98353 0.92189 1.20702 1.00575 0.90254 1.11806 0.92339 0.88495 0.92421 0.92462 0.89451 0.90621 0.83005 0.83783 0.75205 0.92670 0.91389 0.92483 0.97597 0.92291 0.94006 0.98847 0.91684 0.90519 0.90923 0.86181 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 9.38 127.77 1.20 1.79 16 2 N -0.63 -7.03 3.39 -747.30 -2.53 -9.57 16 3 C 0.08 0.49 10.14 127.77 1.30 1.78 16 4 C 0.24 3.89 6.55 38.47 0.25 4.14 16 5 C -0.21 -3.31 9.18 22.36 0.21 -3.10 16 6 C -0.03 -0.58 9.53 22.50 0.21 -0.36 16 7 C -0.22 -5.66 5.88 -20.08 -0.12 -5.78 16 8 C 0.56 18.23 7.73 86.69 0.67 18.90 16 9 O -0.59 -24.58 16.00 -4.01 -0.06 -24.65 16 10 N -0.71 -20.95 5.03 -445.57 -2.24 -23.19 16 11 C 0.16 5.91 2.42 45.02 0.11 6.02 16 12 C -0.12 -4.68 5.65 30.67 0.17 -4.51 16 13 C 0.14 6.55 6.52 86.36 0.56 7.11 16 14 N -0.61 -31.55 2.99 -699.11 -2.09 -33.64 16 15 C -0.26 -14.59 9.58 84.03 0.81 -13.78 16 16 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 17 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 18 N -0.94 -55.92 11.20 21.65 0.24 -55.67 16 19 Si 0.97 44.96 29.59 68.60 2.03 46.99 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 C 0.18 8.76 5.30 86.36 0.46 9.22 16 24 C -0.13 -4.74 5.55 30.67 0.17 -4.57 16 25 C -0.02 -0.56 9.58 22.50 0.22 -0.34 16 26 C -0.21 -3.97 9.28 22.36 0.21 -3.76 16 27 H 0.06 0.41 7.93 -2.39 -0.02 0.40 16 28 H 0.10 0.24 7.80 -2.38 -0.02 0.22 16 29 H 0.06 0.42 7.93 -2.39 -0.02 0.40 16 30 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.09 0.21 7.92 -2.39 -0.02 0.19 16 32 H 0.08 0.41 6.18 -2.39 -0.01 0.40 16 33 H 0.15 1.58 6.12 -2.91 -0.02 1.56 16 34 H 0.14 2.07 6.39 -2.91 -0.02 2.05 16 35 H 0.41 9.23 6.62 -92.70 -0.61 8.62 16 36 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 41 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 42 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.06 3.53 6.06 -2.38 -0.01 3.52 16 44 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.12 3.17 7.64 -2.91 -0.02 3.15 16 47 H 0.14 2.07 6.70 -2.91 -0.02 2.05 16 Total: -1.00 -73.94 372.67 2.54 -71.40 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.36 Total: 18.07 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 6.84 Total: 10.26 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -6.62 Total: -122.07 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.06 Total: -24.65 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -73.94 2.54 -71.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.505 kcal (2) G-P(sol) polarization free energy of solvation -73.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds