Wall clock time and date at job start Tue Mar 31 2020 11:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46499 * 120.00452 * 2 1 4 4 C 1.50702 * 109.47011 * 89.99351 * 3 2 1 5 5 H 1.07993 * 120.00199 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99738 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99917 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99949 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47578 * 270.00342 * 8 6 4 10 10 H 1.48504 * 109.46819 * 30.00374 * 8 6 4 11 11 H 1.48500 * 109.47141 * 149.99888 * 8 6 4 12 12 C 1.34778 * 119.99998 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00312 * 184.14446 * 12 2 1 14 14 C 1.50701 * 119.99668 * 4.15349 * 12 2 1 15 15 H 1.08997 * 109.46685 * 33.66326 * 14 12 2 16 16 C 1.53041 * 109.46368 * 273.68233 * 14 12 2 17 17 C 1.53111 * 109.27958 * 180.80395 * 16 14 12 18 18 C 1.53124 * 109.16242 * 57.65877 * 17 16 14 19 19 C 1.53039 * 109.27398 * 302.34460 * 18 17 16 20 20 N 1.46840 * 109.52612 * 59.17889 * 19 18 17 21 21 C 1.46895 * 111.00292 * 174.15942 * 20 19 18 22 22 C 1.50702 * 109.47091 * 288.54000 * 21 20 19 23 23 C 1.38652 * 120.78548 * 269.71697 * 22 21 20 24 24 C 1.38206 * 119.15764 * 179.75552 * 23 22 21 25 25 N 1.31875 * 120.76354 * 0.53386 * 24 23 22 26 26 C 1.31866 * 121.72422 * 359.73682 * 25 24 23 27 27 C 1.38201 * 120.77045 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47055 * 95.21954 * 1 2 3 29 29 H 1.09000 * 109.47926 * 215.22177 * 1 2 3 30 30 H 1.09006 * 109.47229 * 335.22444 * 1 2 3 31 31 H 1.09006 * 109.46922 * 329.99776 * 3 2 1 32 32 H 1.08991 * 109.47357 * 210.00139 * 3 2 1 33 33 H 0.97003 * 119.99615 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.50253 * 300.74983 * 16 14 12 35 35 H 1.09002 * 109.49795 * 60.82319 * 16 14 12 36 36 H 1.09002 * 109.52160 * 177.55960 * 17 16 14 37 37 H 1.09003 * 109.52877 * 297.68576 * 17 16 14 38 38 H 1.08997 * 109.50327 * 62.28242 * 18 17 16 39 39 H 1.08993 * 109.50593 * 182.36374 * 18 17 16 40 40 H 1.08996 * 109.46002 * 179.19474 * 19 18 17 41 41 H 1.08999 * 109.45883 * 299.17182 * 19 18 17 42 42 H 1.09005 * 109.47286 * 48.53667 * 21 20 19 43 43 H 1.09005 * 109.47494 * 168.53695 * 21 20 19 44 44 H 1.07991 * 120.42312 * 0.02562 * 23 22 21 45 45 H 1.07992 * 119.62128 * 180.29488 * 24 23 22 46 46 H 1.08008 * 119.61692 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.42350 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 1.4208 5 1 2.0979 1.0959 2.2417 6 6 3.1260 2.8780 1.6728 7 7 3.5526 3.6185 0.6731 8 14 3.4378 3.4169 3.4339 9 1 2.3077 4.2592 3.9014 10 1 3.5560 2.2196 4.3044 11 1 4.6979 4.2003 3.4961 12 6 2.1388 -1.1672 0.0005 13 8 3.3492 -1.1686 0.0764 14 6 1.3882 -2.4706 -0.0934 15 1 0.5033 -2.3361 -0.7154 16 6 0.9638 -2.9168 1.3076 17 6 0.2192 -4.2510 1.2094 18 6 1.1276 -5.2853 0.5387 19 6 1.5473 -4.7705 -0.8400 20 7 2.2560 -3.4930 -0.6921 21 6 2.7946 -3.0374 -1.9805 22 6 3.9551 -3.9130 -2.3777 23 6 5.2494 -3.5909 -1.9987 24 6 6.2880 -4.4204 -2.3771 25 7 6.0600 -5.5007 -3.0984 26 6 4.8431 -5.8348 -3.4811 27 6 3.7546 -5.0567 -3.1354 28 1 -0.3633 -0.0935 -1.0234 29 1 -0.3635 -0.8395 0.5927 30 1 -0.3634 0.9331 0.4307 31 1 1.6085 2.0284 -0.5139 32 1 3.1499 1.1383 -0.5138 33 1 4.0288 4.4447 0.8504 34 1 1.8474 -3.0383 1.9341 35 1 0.3077 -2.1646 1.7458 36 1 -0.0471 -4.5940 2.2092 37 1 -0.6858 -4.1204 0.6160 38 1 2.0138 -5.4441 1.1531 39 1 0.5882 -6.2259 0.4279 40 1 2.2057 -5.4982 -1.3144 41 1 0.6615 -4.6249 -1.4584 42 1 2.0166 -3.0982 -2.7416 43 1 3.1330 -2.0053 -1.8885 44 1 5.4429 -2.7054 -1.4116 45 1 7.2984 -4.1793 -2.0820 46 1 4.6954 -6.7270 -4.0717 47 1 2.7604 -5.3358 -3.4515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112598565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:27 Heat of formation + Delta-G solvation = 7.528960 kcal Electronic energy + Delta-G solvation = -27508.214048 eV Core-core repulsion = 23883.913560 eV Total energy + Delta-G solvation = -3624.300489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.49397 -39.67456 -37.67732 -35.02536 -34.42076 -32.68181 -31.87779 -31.24241 -30.93159 -27.88727 -26.92619 -25.88666 -24.14621 -23.71171 -23.16340 -22.29800 -21.40888 -19.89908 -18.49675 -16.71177 -16.58334 -16.51422 -16.25888 -16.03626 -15.56356 -15.06691 -14.71769 -14.61326 -14.21959 -14.00959 -13.82593 -13.68094 -13.57566 -13.30420 -13.07533 -12.61045 -12.45244 -12.15431 -12.03918 -11.97764 -11.78007 -11.34705 -11.27592 -11.18001 -10.98275 -10.84197 -10.68005 -10.60151 -10.43789 -10.16738 -9.65040 -9.57918 -9.44264 -9.06974 -8.80116 -8.45413 -8.26208 -7.67243 -6.06165 -4.10687 1.18382 1.29988 3.28683 3.30970 3.36284 3.40887 3.56799 3.87878 4.20961 4.43429 4.49094 4.64272 4.73301 4.75076 4.83964 4.92677 5.10684 5.15747 5.18136 5.24327 5.26065 5.29335 5.35696 5.43766 5.59790 5.60289 5.63979 5.67188 5.77325 5.84126 5.85025 5.88560 5.95637 6.03839 6.07996 6.08359 6.18956 6.36968 6.48310 6.77228 6.89030 7.02669 7.12367 7.38514 7.50977 7.90183 8.00483 8.20909 8.37129 8.88315 9.06643 9.54596 11.01886 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.003975 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.830111 B = 7042.786702 C = 8312.688112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.603 5.603 3 C 0.247 3.753 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.285 1.285 12 C 0.507 3.493 13 O -0.519 6.519 14 C 0.072 3.928 15 H 0.055 0.945 16 C -0.107 4.107 17 C -0.118 4.118 18 C -0.117 4.117 19 C 0.053 3.947 20 N -0.508 5.508 21 C 0.084 3.916 22 C -0.022 4.022 23 C -0.140 4.140 24 C 0.094 3.906 25 N -0.491 5.491 26 C 0.089 3.911 27 C -0.173 4.173 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.032 0.968 42 H 0.041 0.959 43 H 0.103 0.897 44 H 0.144 0.856 45 H 0.154 0.846 46 H 0.150 0.850 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 -17.534 -5.707 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.336 5.336 3 C 0.128 3.872 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.211 1.211 12 C 0.292 3.708 13 O -0.395 6.395 14 C -0.040 4.040 15 H 0.073 0.927 16 C -0.145 4.145 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.074 4.074 20 N -0.233 5.233 21 C -0.043 4.043 22 C -0.030 4.030 23 C -0.160 4.160 24 C -0.063 4.063 25 N -0.200 5.200 26 C -0.068 4.068 27 C -0.193 4.193 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.121 0.879 44 H 0.162 0.838 45 H 0.172 0.828 46 H 0.168 0.832 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.513 -17.924 -5.631 19.579 hybrid contribution -1.370 1.157 0.688 1.921 sum -6.883 -16.767 -4.943 18.786 Atomic orbital electron populations 1.21694 0.81669 1.02957 1.00009 1.48199 1.06069 1.07761 1.71565 1.19282 0.92359 0.77973 0.97556 1.21415 1.36475 1.06166 0.92268 0.92467 1.24928 0.95339 0.96405 0.97392 1.69928 1.38486 1.14306 1.30728 0.86509 0.77680 0.78602 0.84721 1.20679 1.19860 1.21077 1.20074 0.88173 0.84466 0.78080 1.90665 1.13727 1.86702 1.48401 1.21677 0.93936 0.90982 0.97389 0.92706 1.21543 1.01148 0.96987 0.94839 1.21580 0.97971 0.95114 1.00889 1.21588 0.99955 0.97753 0.96151 1.22207 0.96419 0.91553 0.97251 1.61525 1.36062 1.02433 1.23293 1.21199 0.93681 0.99857 0.89522 1.20119 0.95077 0.94138 0.93684 1.22252 0.92717 1.01553 0.99463 1.22778 0.99612 0.90073 0.93814 1.67635 1.24079 1.17088 1.11248 1.22618 0.87863 0.98829 0.97464 1.22025 1.00390 0.96140 1.00766 0.94025 0.92510 0.90453 0.95063 0.94018 0.92725 0.90202 0.90717 0.91458 0.92208 0.90916 0.91609 0.90336 0.95033 0.94063 0.87895 0.83816 0.82825 0.83235 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 9.65 59.84 0.58 1.81 16 2 N -0.60 -12.33 2.86 -182.96 -0.52 -12.85 16 3 C 0.25 6.31 5.11 -5.19 -0.03 6.28 16 4 C -0.52 -14.65 9.39 -34.44 -0.32 -14.97 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 C 0.51 10.10 5.63 -10.98 -0.06 10.04 16 13 O -0.52 -12.45 14.80 5.56 0.08 -12.37 16 14 C 0.07 1.07 1.42 -68.87 -0.10 0.97 16 15 H 0.06 0.73 7.11 -51.93 -0.37 0.36 16 16 C -0.11 -1.43 5.17 -26.65 -0.14 -1.57 16 17 C -0.12 -1.19 6.00 -26.61 -0.16 -1.35 16 18 C -0.12 -1.17 6.09 -26.65 -0.16 -1.33 16 19 C 0.05 0.59 5.25 -3.84 -0.02 0.57 16 20 N -0.51 -7.23 4.20 -229.51 -0.96 -8.19 16 21 C 0.08 1.21 4.78 -4.98 -0.02 1.18 16 22 C -0.02 -0.29 5.06 -104.32 -0.53 -0.82 16 23 C -0.14 -2.01 9.82 -39.44 -0.39 -2.40 16 24 C 0.09 1.24 11.18 -17.54 -0.20 1.05 16 25 N -0.49 -6.65 10.36 -13.25 -0.14 -6.79 16 26 C 0.09 1.02 11.18 -17.55 -0.20 0.83 16 27 C -0.17 -1.95 8.24 -39.44 -0.32 -2.27 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.73 5.38 -51.93 -0.28 0.45 16 30 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.20 7.48 -51.93 -0.39 0.81 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 0.97 6.53 -51.93 -0.34 0.63 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.84 5.93 -51.93 -0.31 0.53 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.04 0.52 8.02 -51.93 -0.42 0.10 16 43 H 0.10 1.80 5.56 -51.93 -0.29 1.51 16 44 H 0.14 2.27 8.06 -52.49 -0.42 1.85 16 45 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 46 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 47 H 0.13 1.12 7.86 -52.49 -0.41 0.71 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -32.85 373.05 -9.78 -42.63 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.41 Total: 1.18 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.17 Total: -0.35 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.89 Total: -53.42 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.85 -9.78 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112598565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.160 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds