Wall clock time and date at job start Tue Mar 31 2020 11:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46499 * 120.00452 * 2 1 4 4 C 1.50702 * 109.47011 * 89.99351 * 3 2 1 5 5 H 1.07993 * 120.00199 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99738 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99917 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99949 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47578 * 270.00342 * 8 6 4 10 10 H 1.48504 * 109.46819 * 30.00374 * 8 6 4 11 11 H 1.48500 * 109.47141 * 149.99888 * 8 6 4 12 12 C 1.34778 * 119.99998 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00312 * 184.14446 * 12 2 1 14 14 C 1.50701 * 119.99668 * 4.15349 * 12 2 1 15 15 H 1.08997 * 109.46685 * 33.66326 * 14 12 2 16 16 C 1.53041 * 109.46368 * 273.68233 * 14 12 2 17 17 C 1.53111 * 109.27958 * 180.80395 * 16 14 12 18 18 C 1.53124 * 109.16242 * 57.65877 * 17 16 14 19 19 C 1.53039 * 109.27398 * 302.34460 * 18 17 16 20 20 N 1.46840 * 109.52612 * 59.17889 * 19 18 17 21 21 C 1.46895 * 111.00292 * 174.15942 * 20 19 18 22 22 C 1.50702 * 109.47091 * 288.54000 * 21 20 19 23 23 C 1.38652 * 120.78548 * 269.71697 * 22 21 20 24 24 C 1.38206 * 119.15764 * 179.75552 * 23 22 21 25 25 N 1.31875 * 120.76354 * 0.53386 * 24 23 22 26 26 C 1.31866 * 121.72422 * 359.73682 * 25 24 23 27 27 C 1.38201 * 120.77045 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47055 * 95.21954 * 1 2 3 29 29 H 1.09000 * 109.47926 * 215.22177 * 1 2 3 30 30 H 1.09006 * 109.47229 * 335.22444 * 1 2 3 31 31 H 1.09006 * 109.46922 * 329.99776 * 3 2 1 32 32 H 1.08991 * 109.47357 * 210.00139 * 3 2 1 33 33 H 0.97003 * 119.99615 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.50253 * 300.74983 * 16 14 12 35 35 H 1.09002 * 109.49795 * 60.82319 * 16 14 12 36 36 H 1.09002 * 109.52160 * 177.55960 * 17 16 14 37 37 H 1.09003 * 109.52877 * 297.68576 * 17 16 14 38 38 H 1.08997 * 109.50327 * 62.28242 * 18 17 16 39 39 H 1.08993 * 109.50593 * 182.36374 * 18 17 16 40 40 H 1.08996 * 109.46002 * 179.19474 * 19 18 17 41 41 H 1.08999 * 109.45883 * 299.17182 * 19 18 17 42 42 H 1.09005 * 109.47286 * 48.53667 * 21 20 19 43 43 H 1.09005 * 109.47494 * 168.53695 * 21 20 19 44 44 H 1.07991 * 120.42312 * 0.02562 * 23 22 21 45 45 H 1.07992 * 119.62128 * 180.29488 * 24 23 22 46 46 H 1.08008 * 119.61692 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.42350 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 1.4208 5 1 2.0979 1.0959 2.2417 6 6 3.1260 2.8780 1.6728 7 7 3.5526 3.6185 0.6731 8 14 3.4378 3.4169 3.4339 9 1 2.3077 4.2592 3.9014 10 1 3.5560 2.2196 4.3044 11 1 4.6979 4.2003 3.4961 12 6 2.1388 -1.1672 0.0005 13 8 3.3492 -1.1686 0.0764 14 6 1.3882 -2.4706 -0.0934 15 1 0.5033 -2.3361 -0.7154 16 6 0.9638 -2.9168 1.3076 17 6 0.2192 -4.2510 1.2094 18 6 1.1276 -5.2853 0.5387 19 6 1.5473 -4.7705 -0.8400 20 7 2.2560 -3.4930 -0.6921 21 6 2.7946 -3.0374 -1.9805 22 6 3.9551 -3.9130 -2.3777 23 6 5.2494 -3.5909 -1.9987 24 6 6.2880 -4.4204 -2.3771 25 7 6.0600 -5.5007 -3.0984 26 6 4.8431 -5.8348 -3.4811 27 6 3.7546 -5.0567 -3.1354 28 1 -0.3633 -0.0935 -1.0234 29 1 -0.3635 -0.8395 0.5927 30 1 -0.3634 0.9331 0.4307 31 1 1.6085 2.0284 -0.5139 32 1 3.1499 1.1383 -0.5138 33 1 4.0288 4.4447 0.8504 34 1 1.8474 -3.0383 1.9341 35 1 0.3077 -2.1646 1.7458 36 1 -0.0471 -4.5940 2.2092 37 1 -0.6858 -4.1204 0.6160 38 1 2.0138 -5.4441 1.1531 39 1 0.5882 -6.2259 0.4279 40 1 2.2057 -5.4982 -1.3144 41 1 0.6615 -4.6249 -1.4584 42 1 2.0166 -3.0982 -2.7416 43 1 3.1330 -2.0053 -1.8885 44 1 5.4429 -2.7054 -1.4116 45 1 7.2984 -4.1793 -2.0820 46 1 4.6954 -6.7270 -4.0717 47 1 2.7604 -5.3358 -3.4515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112598565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:26 Heat of formation + Delta-G solvation = -14.205494 kcal Electronic energy + Delta-G solvation = -27509.156525 eV Core-core repulsion = 23883.913560 eV Total energy + Delta-G solvation = -3625.242965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65997 -40.84307 -38.97220 -36.62584 -35.55622 -34.72550 -32.89444 -32.30215 -31.99484 -29.72183 -27.99437 -27.35073 -25.73378 -24.68411 -24.15285 -23.83994 -22.44189 -20.88152 -19.96779 -18.68733 -18.00471 -17.64628 -17.44948 -17.25720 -16.67909 -16.56957 -16.19119 -15.87040 -15.45810 -15.15924 -14.88497 -14.83553 -14.64184 -14.51281 -14.15729 -13.94544 -13.92730 -13.55767 -13.48672 -13.25820 -13.06583 -12.93091 -12.83325 -12.53253 -12.33769 -12.29376 -12.20197 -11.85169 -11.68372 -11.60144 -11.33376 -10.66370 -10.65042 -10.44909 -10.32216 -10.05124 -9.41535 -9.27990 -8.23499 -6.37925 0.21101 0.27192 1.34520 1.37808 1.47874 1.79887 2.21393 2.39836 2.73181 3.06052 3.11279 3.53576 3.59205 3.70226 3.78270 3.85220 4.00673 4.08866 4.16993 4.22525 4.24150 4.26079 4.37212 4.38353 4.56561 4.59737 4.65971 4.75240 4.76734 4.80644 4.89933 4.90711 4.97202 4.99514 5.06102 5.08855 5.19163 5.21351 5.27265 5.43893 5.49500 5.55216 5.78851 5.81085 5.91994 6.05362 6.13246 6.69619 6.79086 7.02294 7.28104 7.50185 8.83281 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.003975 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.830111 B = 7042.786702 C = 8312.688112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.263 3.737 4 C -0.540 4.540 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.965 3.035 9 H -0.262 1.262 10 H -0.275 1.275 11 H -0.281 1.281 12 C 0.499 3.501 13 O -0.574 6.574 14 C 0.087 3.913 15 H 0.083 0.917 16 C -0.106 4.106 17 C -0.109 4.109 18 C -0.115 4.115 19 C 0.053 3.947 20 N -0.529 5.529 21 C 0.091 3.909 22 C -0.032 4.032 23 C -0.165 4.165 24 C 0.088 3.912 25 N -0.508 5.508 26 C 0.092 3.908 27 C -0.160 4.160 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.023 0.977 32 H -0.005 1.005 33 H 0.267 0.733 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.112 0.888 45 H 0.165 0.835 46 H 0.187 0.813 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.299 -20.258 -5.840 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.344 5.344 3 C 0.142 3.858 4 C -0.578 4.578 5 H 0.069 0.931 6 C -0.190 4.190 7 N -0.568 5.568 8 Si 0.789 3.211 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.207 1.207 12 C 0.286 3.714 13 O -0.453 6.453 14 C -0.024 4.024 15 H 0.101 0.899 16 C -0.145 4.145 17 C -0.146 4.146 18 C -0.153 4.153 19 C -0.074 4.074 20 N -0.256 5.256 21 C -0.036 4.036 22 C -0.040 4.040 23 C -0.186 4.186 24 C -0.067 4.067 25 N -0.218 5.218 26 C -0.065 4.065 27 C -0.180 4.180 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.013 0.987 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.130 0.870 45 H 0.183 0.817 46 H 0.204 0.796 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.512 -20.665 -5.765 23.081 hybrid contribution -0.438 1.975 0.669 2.130 sum -8.950 -18.690 -5.096 21.340 Atomic orbital electron populations 1.21979 0.78184 1.03993 1.02486 1.48208 1.08243 1.06303 1.71608 1.18711 0.90886 0.80303 0.95897 1.21680 1.36740 1.06358 0.93061 0.93079 1.25825 0.94919 0.96467 1.01804 1.70046 1.39056 1.14762 1.32949 0.85454 0.78129 0.78170 0.79304 1.18659 1.19964 1.20676 1.21113 0.87913 0.85963 0.76369 1.90638 1.16442 1.87621 1.50568 1.21569 0.93771 0.88074 0.99033 0.89931 1.21571 1.00352 0.99461 0.93076 1.21563 0.98132 0.92624 1.02314 1.21613 0.99492 0.99067 0.95123 1.22336 0.97072 0.89579 0.98400 1.61477 1.37136 1.03483 1.23457 1.21035 0.94536 0.97669 0.90399 1.20196 0.94198 0.95203 0.94423 1.22120 0.94272 1.01352 1.00806 1.22904 0.99870 0.90055 0.93902 1.67706 1.25512 1.16951 1.11654 1.23277 0.87070 0.99586 0.96587 1.22289 1.02068 0.94494 0.99138 0.91077 0.89390 0.91165 0.95878 0.98672 0.92439 0.93467 0.90298 0.90085 0.89761 0.93037 0.88524 0.89823 0.92652 0.91671 0.92297 0.86982 0.81748 0.79565 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.21 9.65 127.77 1.23 3.44 16 2 N -0.61 -25.78 2.86 -851.13 -2.43 -28.21 16 3 C 0.26 14.25 5.11 85.63 0.44 14.69 16 4 C -0.54 -31.37 9.39 25.60 0.24 -31.13 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.51 5.46 84.66 0.46 0.97 16 7 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 8 Si 0.96 45.40 29.54 68.60 2.03 47.42 16 9 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 C 0.50 20.70 5.63 87.66 0.49 21.19 16 13 O -0.57 -29.85 14.80 -3.03 -0.04 -29.90 16 14 C 0.09 2.50 1.42 44.19 0.06 2.56 16 15 H 0.08 1.92 7.11 -2.39 -0.02 1.90 16 16 C -0.11 -2.69 5.17 30.64 0.16 -2.53 16 17 C -0.11 -1.78 6.00 30.67 0.18 -1.60 16 18 C -0.12 -1.91 6.09 30.65 0.19 -1.72 16 19 C 0.05 0.98 5.25 86.33 0.45 1.43 16 20 N -0.53 -14.64 4.20 -880.04 -3.70 -18.34 16 21 C 0.09 2.60 4.78 85.56 0.41 3.01 16 22 C -0.03 -0.86 5.06 -19.67 -0.10 -0.96 16 23 C -0.16 -5.14 9.82 22.36 0.22 -4.92 16 24 C 0.09 2.44 11.18 84.68 0.95 3.39 16 25 N -0.51 -13.31 10.36 -195.84 -2.03 -15.34 16 26 C 0.09 1.86 11.18 84.68 0.95 2.80 16 27 C -0.16 -3.19 8.24 22.36 0.18 -3.00 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 2.01 5.38 -2.39 -0.01 2.00 16 30 H 0.07 2.16 8.03 -2.38 -0.02 2.14 16 31 H 0.02 1.27 8.07 -2.38 -0.02 1.25 16 32 H 0.00 -0.30 7.48 -2.39 -0.02 -0.32 16 33 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.89 6.53 -2.39 -0.02 1.87 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.48 5.93 -2.39 -0.01 1.47 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 1.50 8.02 -2.38 -0.02 1.48 16 43 H 0.06 2.22 5.56 -2.38 -0.01 2.21 16 44 H 0.11 4.12 8.06 -2.91 -0.02 4.09 16 45 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 46 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 47 H 0.16 2.08 7.86 -2.91 -0.02 2.06 16 Total: -1.00 -77.82 373.05 1.58 -76.24 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.95 Total: 16.70 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 6.52 Total: 7.64 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -7.87 Total: -118.10 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.04 Total: -29.90 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -77.82 1.58 -76.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112598565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.032 kcal (2) G-P(sol) polarization free energy of solvation -77.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds