Wall clock time and date at job start Tue Mar 31 2020 11:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99725 * 2 1 4 4 C 1.52996 * 109.47283 * 270.00375 * 3 2 1 5 5 N 1.46900 * 109.47132 * 180.02562 * 4 3 2 6 6 C 1.48534 * 111.00301 * 52.60409 * 5 4 3 7 7 C 1.54938 * 103.22994 * 159.71935 * 6 5 4 8 8 C 1.54595 * 102.92098 * 322.58776 * 7 6 5 9 9 C 1.47902 * 110.99974 * 169.99647 * 5 4 3 10 10 C 1.34776 * 120.00026 * 180.02562 * 2 1 3 11 11 O 1.21578 * 119.99812 * 179.97438 * 10 2 1 12 12 N 1.34776 * 120.00063 * 359.97438 * 10 2 1 13 13 C 1.39244 * 119.99965 * 174.81874 * 12 10 2 14 14 C 1.39481 * 119.83216 * 145.78895 * 13 12 10 15 15 C 1.36379 * 120.16308 * 180.21207 * 14 13 12 16 16 C 1.40867 * 119.83042 * 359.52394 * 15 14 13 17 17 C 1.41156 * 120.15959 * 180.27416 * 16 15 14 18 18 H 1.08008 * 119.99941 * 154.64726 * 17 16 15 19 19 C 1.39890 * 120.00480 * 334.64062 * 17 16 15 20 20 N 1.30888 * 120.00089 * 343.17010 * 19 17 16 21 21 Si 1.86803 * 120.00470 * 163.16724 * 19 17 16 22 22 H 1.48497 * 109.46983 * 89.99911 * 21 19 17 23 23 H 1.48499 * 109.47168 * 210.00374 * 21 19 17 24 24 H 1.48500 * 109.46811 * 330.00206 * 21 19 17 25 25 C 1.40864 * 119.67471 * 0.25618 * 16 15 14 26 26 C 1.36377 * 119.82867 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.46574 * 269.99219 * 1 2 3 28 28 H 1.08989 * 109.47485 * 29.99686 * 1 2 3 29 29 H 1.09004 * 109.46752 * 150.00134 * 1 2 3 30 30 H 1.09006 * 109.47356 * 30.00303 * 3 2 1 31 31 H 1.08997 * 109.46987 * 150.00165 * 3 2 1 32 32 H 1.09000 * 109.47024 * 299.99824 * 4 3 2 33 33 H 1.08997 * 109.47281 * 59.99970 * 4 3 2 34 34 H 1.09003 * 110.66317 * 278.15605 * 6 5 4 35 35 H 1.09006 * 110.66345 * 41.28221 * 6 5 4 36 36 H 1.08998 * 110.71854 * 204.22645 * 7 6 5 37 37 H 1.08997 * 110.71995 * 80.94232 * 7 6 5 38 38 H 1.09005 * 110.30516 * 263.03899 * 8 7 6 39 39 H 1.08992 * 110.39108 * 140.91731 * 8 7 6 40 40 H 1.08997 * 109.91932 * 333.51347 * 9 5 4 41 41 H 1.09004 * 109.91683 * 94.60636 * 9 5 4 42 42 H 0.97001 * 120.00145 * 354.82793 * 12 10 2 43 43 H 1.07996 * 119.91558 * 0.02562 * 14 13 12 44 44 H 1.08001 * 120.08188 * 179.80005 * 15 14 13 45 45 H 0.96993 * 120.00279 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.08803 * 180.02562 * 25 16 15 47 47 H 1.07993 * 119.91439 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4424 5 7 3.1874 2.9824 -1.4424 6 6 4.4077 2.8921 -0.6005 7 6 5.2858 4.0569 -1.1227 8 6 5.0126 4.0405 -2.6443 9 6 3.6600 3.3215 -2.8022 10 6 2.1389 -1.1672 -0.0005 11 8 3.3547 -1.1671 -0.0010 12 7 1.4651 -2.3344 -0.0005 13 6 2.1570 -3.5378 -0.1100 14 6 1.6905 -4.6697 0.5584 15 6 2.3653 -5.8507 0.4594 16 6 3.5306 -5.9280 -0.3284 17 6 4.2312 -7.1483 -0.4404 18 1 4.8422 -7.3424 -1.3096 19 6 4.1343 -8.1062 0.5745 20 7 3.6821 -7.7660 1.7547 21 14 4.6504 -9.8711 0.2454 22 1 6.0903 -10.0345 0.5698 23 1 3.8452 -10.7883 1.0914 24 1 4.4260 -10.1936 -1.1867 25 6 3.9929 -4.7817 -1.0041 26 6 3.3101 -3.6065 -0.8918 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5137 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 3.0415 0.9509 -1.9563 33 1 1.5000 1.8408 -1.9562 34 1 4.1611 3.0378 0.4512 35 1 4.9085 1.9355 -0.7504 36 1 6.3395 3.8673 -0.9179 37 1 4.9708 5.0038 -0.6844 38 1 5.7968 3.4896 -3.1635 39 1 4.9474 5.0581 -3.0293 40 1 3.7893 2.4115 -3.3881 41 1 2.9416 3.9791 -3.2918 42 1 0.4981 -2.3362 0.0756 43 1 0.7944 -4.6099 1.1582 44 1 2.0047 -6.7255 0.9801 45 1 3.6153 -8.4300 2.4584 46 1 4.8852 -4.8336 -1.6102 47 1 3.6636 -2.7268 -1.4089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118796942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:53 Heat of formation + Delta-G solvation = 7.263488 kcal Electronic energy + Delta-G solvation = -26159.651900 eV Core-core repulsion = 22535.339899 eV Total energy + Delta-G solvation = -3624.312000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.18438 -39.01785 -37.51334 -35.54526 -34.47140 -33.17665 -32.37234 -29.59158 -29.29212 -28.89619 -28.09106 -26.41429 -24.81317 -23.26158 -21.53649 -21.07768 -20.92622 -20.45327 -19.19869 -17.88202 -17.26841 -16.71289 -16.29660 -16.08381 -15.21301 -15.18565 -14.89373 -14.45462 -14.16176 -13.92222 -13.59448 -13.42978 -13.01907 -12.87030 -12.80447 -12.64708 -12.32363 -12.06196 -12.04648 -11.80062 -11.64273 -11.56787 -11.30886 -11.27295 -11.09535 -10.99085 -10.93307 -10.74392 -10.70569 -10.03520 -9.57304 -9.47909 -9.15406 -8.89519 -8.60708 -8.57324 -7.50867 -6.92619 -6.70555 -4.26311 2.66699 2.88149 3.08060 3.09834 3.13616 3.18271 3.68407 3.91420 3.95389 4.37287 4.46033 4.50614 4.66737 4.76968 4.97191 5.00689 5.04278 5.14805 5.32342 5.37981 5.44009 5.48999 5.55178 5.59951 5.64510 5.71278 5.74052 5.78853 5.90847 5.92758 6.00204 6.21934 6.41570 6.47559 6.68566 6.80948 6.82836 6.93680 7.07006 7.13338 7.29497 7.36813 7.64041 7.88475 7.98467 8.07535 8.31560 8.47044 8.63263 8.91838 8.94414 9.13233 10.21315 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.002502 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.343911 B =11186.561442 C =12033.582608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.639 5.639 3 C 0.137 3.863 4 C 0.031 3.969 5 N -0.516 5.516 6 C 0.028 3.972 7 C -0.124 4.124 8 C -0.131 4.131 9 C 0.035 3.965 10 C 0.695 3.305 11 O -0.576 6.576 12 N -0.665 5.665 13 C 0.012 3.988 14 C -0.115 4.115 15 C -0.152 4.152 16 C 0.104 3.896 17 C -0.459 4.459 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.795 5.795 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.214 4.214 26 C -0.076 4.076 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.391 0.609 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.280 0.720 46 H 0.094 0.906 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 18.391 -4.019 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.378 5.378 3 C 0.013 3.987 4 C -0.099 4.099 5 N -0.241 5.241 6 C -0.099 4.099 7 C -0.162 4.162 8 C -0.169 4.169 9 C -0.093 4.093 10 C 0.397 3.603 11 O -0.452 6.452 12 N -0.312 5.312 13 C -0.080 4.080 14 C -0.136 4.136 15 C -0.172 4.172 16 C 0.101 3.899 17 C -0.488 4.488 18 H 0.095 0.905 19 C -0.143 4.143 20 N -0.420 5.420 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.234 4.234 26 C -0.096 4.096 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.226 0.774 43 H 0.107 0.893 44 H 0.139 0.861 45 H 0.091 0.909 46 H 0.112 0.888 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.970 18.682 -3.592 19.663 hybrid contribution 0.145 -1.435 -0.279 1.469 sum -4.825 17.247 -3.871 18.323 Atomic orbital electron populations 1.21699 0.80203 1.02869 1.01584 1.46999 1.06113 1.04973 1.79720 1.21233 0.98089 0.83581 0.95782 1.22698 0.98965 0.89921 0.98298 1.64806 1.20739 1.30033 1.08493 1.23310 0.90178 0.98031 0.98396 1.22479 0.99569 0.99002 0.95128 1.22390 0.96695 1.00904 0.96948 1.22862 0.96180 0.99486 0.90736 1.15973 0.85508 0.80293 0.78517 1.90908 1.11425 1.85721 1.57180 1.42270 1.08989 1.03831 1.76132 1.16976 0.99799 0.83969 1.07283 1.20196 1.00185 0.93472 0.99741 1.20879 0.95909 0.96555 1.03853 1.17644 0.90454 0.91895 0.89879 1.19527 1.25468 0.99356 1.04468 0.90459 1.25915 0.93370 1.00884 0.94156 1.69850 1.34761 1.35634 1.01784 0.86323 0.79200 0.81546 0.79714 1.19532 1.20140 1.18493 1.20639 1.01436 0.92758 1.08599 1.20230 0.95024 0.96980 0.97403 0.92782 0.90997 0.91466 0.90186 0.89675 0.93818 0.90812 0.89864 0.92842 0.91032 0.90841 0.91507 0.91102 0.93681 0.90458 0.77449 0.89271 0.86089 0.90928 0.88805 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.16 59.85 0.61 1.36 16 2 N -0.64 -8.75 2.87 -187.35 -0.54 -9.28 16 3 C 0.14 1.69 5.07 -4.05 -0.02 1.67 16 4 C 0.03 0.37 5.35 -3.83 -0.02 0.35 16 5 N -0.52 -5.63 5.40 -230.45 -1.24 -6.87 16 6 C 0.03 0.30 5.10 -1.90 -0.01 0.29 16 7 C -0.12 -1.07 7.06 -24.87 -0.18 -1.25 16 8 C -0.13 -1.10 6.93 -25.38 -0.18 -1.28 16 9 C 0.04 0.34 6.69 -2.75 -0.02 0.33 16 10 C 0.69 12.97 8.00 -86.92 -0.70 12.27 16 11 O -0.58 -13.15 13.64 5.30 0.07 -13.07 16 12 N -0.67 -12.31 5.14 -14.10 -0.07 -12.39 16 13 C 0.01 0.28 6.27 -83.57 -0.52 -0.24 16 14 C -0.12 -2.69 9.90 -39.79 -0.39 -3.09 16 15 C -0.15 -3.96 8.63 -39.26 -0.34 -4.30 16 16 C 0.10 2.83 5.57 -106.80 -0.59 2.23 16 17 C -0.46 -12.33 9.04 -37.86 -0.34 -12.67 16 18 H 0.08 2.00 7.90 -52.48 -0.41 1.58 16 19 C 0.07 1.88 5.15 -17.34 -0.09 1.79 16 20 N -0.79 -20.75 10.95 55.54 0.61 -20.14 16 21 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 25 C -0.21 -5.56 9.74 -39.26 -0.38 -5.94 16 26 C -0.08 -1.88 8.57 -39.79 -0.34 -2.22 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.52 8.07 -51.94 -0.42 0.11 16 29 H 0.07 0.60 6.44 -51.93 -0.33 0.26 16 30 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.08 1.23 6.07 -51.93 -0.32 0.91 16 32 H 0.04 0.64 7.81 -51.93 -0.41 0.24 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.84 7.66 -51.93 -0.40 0.44 16 35 H 0.05 0.68 8.00 -51.93 -0.42 0.27 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.47 7.57 -51.93 -0.39 0.08 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.39 5.77 6.62 -40.82 -0.27 5.50 16 43 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 44 H 0.12 3.21 6.18 -52.49 -0.32 2.89 16 45 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 46 H 0.09 2.32 8.06 -52.49 -0.42 1.89 16 47 H 0.10 2.45 6.47 -52.49 -0.34 2.11 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -31.28 374.41 -11.46 -42.75 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.39 Total: 10.31 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -3.51 Total: -10.69 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -1.25 Total: -48.68 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.07 Total: -13.07 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.28 -11.46 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118796942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.012 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds