Wall clock time and date at job start Tue Mar 31 2020 11:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99725 * 2 1 4 4 C 1.52996 * 109.47283 * 270.00375 * 3 2 1 5 5 N 1.46900 * 109.47132 * 180.02562 * 4 3 2 6 6 C 1.48534 * 111.00301 * 52.60409 * 5 4 3 7 7 C 1.54938 * 103.22994 * 159.71935 * 6 5 4 8 8 C 1.54595 * 102.92098 * 322.58776 * 7 6 5 9 9 C 1.47902 * 110.99974 * 169.99647 * 5 4 3 10 10 C 1.34776 * 120.00026 * 180.02562 * 2 1 3 11 11 O 1.21578 * 119.99812 * 179.97438 * 10 2 1 12 12 N 1.34776 * 120.00063 * 359.97438 * 10 2 1 13 13 C 1.39244 * 119.99965 * 174.81874 * 12 10 2 14 14 C 1.39481 * 119.83216 * 145.78895 * 13 12 10 15 15 C 1.36379 * 120.16308 * 180.21207 * 14 13 12 16 16 C 1.40867 * 119.83042 * 359.52394 * 15 14 13 17 17 C 1.41156 * 120.15959 * 180.27416 * 16 15 14 18 18 H 1.08008 * 119.99941 * 154.64726 * 17 16 15 19 19 C 1.39890 * 120.00480 * 334.64062 * 17 16 15 20 20 N 1.30888 * 120.00089 * 343.17010 * 19 17 16 21 21 Si 1.86803 * 120.00470 * 163.16724 * 19 17 16 22 22 H 1.48497 * 109.46983 * 89.99911 * 21 19 17 23 23 H 1.48499 * 109.47168 * 210.00374 * 21 19 17 24 24 H 1.48500 * 109.46811 * 330.00206 * 21 19 17 25 25 C 1.40864 * 119.67471 * 0.25618 * 16 15 14 26 26 C 1.36377 * 119.82867 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.46574 * 269.99219 * 1 2 3 28 28 H 1.08989 * 109.47485 * 29.99686 * 1 2 3 29 29 H 1.09004 * 109.46752 * 150.00134 * 1 2 3 30 30 H 1.09006 * 109.47356 * 30.00303 * 3 2 1 31 31 H 1.08997 * 109.46987 * 150.00165 * 3 2 1 32 32 H 1.09000 * 109.47024 * 299.99824 * 4 3 2 33 33 H 1.08997 * 109.47281 * 59.99970 * 4 3 2 34 34 H 1.09003 * 110.66317 * 278.15605 * 6 5 4 35 35 H 1.09006 * 110.66345 * 41.28221 * 6 5 4 36 36 H 1.08998 * 110.71854 * 204.22645 * 7 6 5 37 37 H 1.08997 * 110.71995 * 80.94232 * 7 6 5 38 38 H 1.09005 * 110.30516 * 263.03899 * 8 7 6 39 39 H 1.08992 * 110.39108 * 140.91731 * 8 7 6 40 40 H 1.08997 * 109.91932 * 333.51347 * 9 5 4 41 41 H 1.09004 * 109.91683 * 94.60636 * 9 5 4 42 42 H 0.97001 * 120.00145 * 354.82793 * 12 10 2 43 43 H 1.07996 * 119.91558 * 0.02562 * 14 13 12 44 44 H 1.08001 * 120.08188 * 179.80005 * 15 14 13 45 45 H 0.96993 * 120.00279 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.08803 * 180.02562 * 25 16 15 47 47 H 1.07993 * 119.91439 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4424 5 7 3.1874 2.9824 -1.4424 6 6 4.4077 2.8921 -0.6005 7 6 5.2858 4.0569 -1.1227 8 6 5.0126 4.0405 -2.6443 9 6 3.6600 3.3215 -2.8022 10 6 2.1389 -1.1672 -0.0005 11 8 3.3547 -1.1671 -0.0010 12 7 1.4651 -2.3344 -0.0005 13 6 2.1570 -3.5378 -0.1100 14 6 1.6905 -4.6697 0.5584 15 6 2.3653 -5.8507 0.4594 16 6 3.5306 -5.9280 -0.3284 17 6 4.2312 -7.1483 -0.4404 18 1 4.8422 -7.3424 -1.3096 19 6 4.1343 -8.1062 0.5745 20 7 3.6821 -7.7660 1.7547 21 14 4.6504 -9.8711 0.2454 22 1 6.0903 -10.0345 0.5698 23 1 3.8452 -10.7883 1.0914 24 1 4.4260 -10.1936 -1.1867 25 6 3.9929 -4.7817 -1.0041 26 6 3.3101 -3.6065 -0.8918 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5137 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 3.0415 0.9509 -1.9563 33 1 1.5000 1.8408 -1.9562 34 1 4.1611 3.0378 0.4512 35 1 4.9085 1.9355 -0.7504 36 1 6.3395 3.8673 -0.9179 37 1 4.9708 5.0038 -0.6844 38 1 5.7968 3.4896 -3.1635 39 1 4.9474 5.0581 -3.0293 40 1 3.7893 2.4115 -3.3881 41 1 2.9416 3.9791 -3.2918 42 1 0.4981 -2.3362 0.0756 43 1 0.7944 -4.6099 1.1582 44 1 2.0047 -6.7255 0.9801 45 1 3.6153 -8.4300 2.4584 46 1 4.8852 -4.8336 -1.6102 47 1 3.6636 -2.7268 -1.4089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118796942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:52 Heat of formation + Delta-G solvation = -11.981699 kcal Electronic energy + Delta-G solvation = -26160.486434 eV Core-core repulsion = 22535.339899 eV Total energy + Delta-G solvation = -3625.146534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61909 -39.98694 -39.24647 -36.85692 -36.19665 -34.83556 -33.45612 -31.49212 -30.82503 -30.02145 -29.07146 -27.58922 -26.47569 -24.42626 -23.26839 -22.59925 -21.77612 -21.70246 -20.66034 -19.35342 -19.09244 -18.14390 -17.32838 -17.12381 -16.96620 -16.51047 -16.08699 -15.73510 -15.48642 -15.28370 -14.91049 -14.65468 -14.51179 -14.24728 -13.99126 -13.81490 -13.68818 -13.61221 -13.31497 -13.04521 -12.89833 -12.86685 -12.76163 -12.50066 -12.45490 -12.31405 -12.09528 -11.86462 -11.79274 -11.46665 -11.45229 -11.22039 -11.01254 -10.71132 -9.73838 -9.54128 -9.47831 -8.82066 -8.59251 -6.26948 0.84391 1.12989 1.39144 1.45864 1.54470 1.65852 2.15173 2.22646 2.74851 2.92484 3.18947 3.66910 3.72414 3.73544 3.94364 4.05457 4.17290 4.24969 4.32077 4.37430 4.45753 4.47708 4.57889 4.60505 4.68280 4.71737 4.87027 4.88690 4.90683 4.93821 4.94745 5.03269 5.09435 5.14893 5.15574 5.26749 5.28792 5.43622 5.48744 5.62916 5.76387 5.82710 5.95190 6.03220 6.08440 6.15083 6.37233 6.65119 6.93008 6.99723 7.01213 7.61887 8.34090 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.002502 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.343911 B =11186.561442 C =12033.582608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.628 5.628 3 C 0.138 3.862 4 C 0.041 3.959 5 N -0.512 5.512 6 C 0.025 3.975 7 C -0.119 4.119 8 C -0.130 4.130 9 C 0.031 3.969 10 C 0.690 3.310 11 O -0.625 6.625 12 N -0.658 5.658 13 C 0.028 3.972 14 C -0.112 4.112 15 C -0.169 4.169 16 C 0.074 3.926 17 C -0.496 4.496 18 H 0.074 0.926 19 C 0.034 3.966 20 N -0.825 5.825 21 Si 0.985 3.015 22 H -0.265 1.265 23 H -0.263 1.263 24 H -0.259 1.259 25 C -0.232 4.232 26 C -0.087 4.087 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.059 0.941 32 H 0.006 0.994 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.022 0.978 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.030 0.970 41 H 0.093 0.907 42 H 0.412 0.588 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.289 0.711 46 H 0.092 0.908 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.323 19.832 -3.726 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.366 5.366 3 C 0.015 3.985 4 C -0.089 4.089 5 N -0.236 5.236 6 C -0.102 4.102 7 C -0.157 4.157 8 C -0.168 4.168 9 C -0.097 4.097 10 C 0.392 3.608 11 O -0.505 6.505 12 N -0.307 5.307 13 C -0.066 4.066 14 C -0.133 4.133 15 C -0.189 4.189 16 C 0.071 3.929 17 C -0.526 4.526 18 H 0.092 0.908 19 C -0.181 4.181 20 N -0.452 5.452 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.187 1.187 24 H -0.183 1.183 25 C -0.253 4.253 26 C -0.107 4.107 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.025 0.975 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.041 0.959 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.111 0.889 42 H 0.251 0.749 43 H 0.142 0.858 44 H 0.130 0.870 45 H 0.100 0.900 46 H 0.110 0.890 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.923 20.188 -3.301 21.596 hybrid contribution 0.662 -1.678 -0.361 1.840 sum -6.261 18.510 -3.662 19.880 Atomic orbital electron populations 1.22055 0.76919 1.04705 1.03396 1.47037 1.08064 1.03577 1.77873 1.21334 0.97548 0.83525 0.96104 1.22578 0.99183 0.89436 0.97689 1.64874 1.20683 1.28863 1.09214 1.23324 0.90503 0.97495 0.98915 1.22492 0.99478 0.98518 0.95260 1.22413 0.95757 1.01807 0.96781 1.22970 0.97474 0.99315 0.89963 1.16204 0.85057 0.81400 0.78162 1.90883 1.13876 1.86611 1.59154 1.42044 1.09907 1.02554 1.76175 1.17003 0.98850 0.85507 1.05254 1.20450 1.00927 0.92503 0.99408 1.20903 0.96181 0.97424 1.04369 1.17965 0.91456 0.92514 0.90947 1.19760 1.26871 1.00582 1.05351 0.90819 1.26770 0.92950 1.04966 0.93365 1.69888 1.35301 1.37378 1.02584 0.85174 0.78987 0.75679 0.79665 1.18964 1.18688 1.18263 1.20754 1.01947 0.93291 1.09269 1.20298 0.96027 0.96256 0.98136 0.90905 0.88065 0.90849 0.86899 0.92255 0.97522 0.89125 0.89345 0.95928 0.90518 0.89484 0.91762 0.89105 0.95143 0.88878 0.74935 0.85801 0.86976 0.90011 0.89000 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 10.16 127.77 1.30 2.36 16 2 N -0.63 -16.08 2.87 -864.93 -2.49 -18.57 16 3 C 0.14 3.24 5.07 86.38 0.44 3.68 16 4 C 0.04 0.95 5.35 86.30 0.46 1.41 16 5 N -0.51 -10.65 5.40 -883.01 -4.76 -15.42 16 6 C 0.03 0.54 5.10 86.65 0.44 0.99 16 7 C -0.12 -1.93 7.06 31.80 0.22 -1.71 16 8 C -0.13 -2.00 6.93 31.47 0.22 -1.78 16 9 C 0.03 0.57 6.69 86.45 0.58 1.14 16 10 C 0.69 25.45 8.00 179.05 1.43 26.89 16 11 O -0.62 -29.41 13.64 -3.96 -0.05 -29.46 16 12 N -0.66 -23.54 5.14 -316.78 -1.63 -25.17 16 13 C 0.03 1.28 6.27 38.57 0.24 1.52 16 14 C -0.11 -5.19 9.90 22.14 0.22 -4.97 16 15 C -0.17 -8.97 8.63 22.48 0.19 -8.78 16 16 C 0.07 4.18 5.57 -21.28 -0.12 4.06 16 17 C -0.50 -27.68 9.04 23.39 0.21 -27.47 16 18 H 0.07 3.99 7.90 -2.91 -0.02 3.96 16 19 C 0.03 1.75 5.15 85.23 0.44 2.19 16 20 N -0.83 -43.72 10.95 21.82 0.24 -43.48 16 21 Si 0.98 38.73 29.59 68.60 2.03 40.76 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 25 C -0.23 -12.65 9.74 22.48 0.22 -12.43 16 26 C -0.09 -4.43 8.57 22.14 0.19 -4.24 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 1.00 8.07 -2.39 -0.02 0.98 16 29 H 0.07 1.04 6.44 -2.38 -0.02 1.03 16 30 H 0.11 1.94 8.07 -2.38 -0.02 1.92 16 31 H 0.06 1.73 6.07 -2.39 -0.01 1.72 16 32 H 0.01 0.20 7.81 -2.39 -0.02 0.18 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.76 7.66 -2.39 -0.02 1.74 16 35 H 0.02 0.62 8.00 -2.38 -0.02 0.60 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.03 0.65 7.57 -2.39 -0.02 0.63 16 41 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.41 11.10 6.62 -92.71 -0.61 10.48 16 43 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 44 H 0.11 6.09 6.18 -2.91 -0.02 6.07 16 45 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 46 H 0.09 4.84 8.06 -2.91 -0.02 4.81 16 47 H 0.09 4.88 6.47 -2.91 -0.02 4.87 16 Total: -1.00 -71.41 374.41 0.38 -71.04 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: 0.35 Total: 37.45 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 6.69 Total: -17.15 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -8.64 Total: -102.64 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.05 Total: -29.46 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -71.41 0.38 -71.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118796942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.055 kcal (2) G-P(sol) polarization free energy of solvation -71.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds