Wall clock time and date at job start Tue Mar 31 2020 11:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99737 * 2 1 4 4 C 1.46902 * 111.00098 * 123.94794 * 2 1 3 5 5 C 1.53002 * 109.46626 * 66.05337 * 4 2 1 6 6 H 1.09003 * 110.88660 * 302.57075 * 5 4 2 7 7 C 1.55160 * 111.00420 * 178.64989 * 5 4 2 8 8 C 1.54317 * 102.94135 * 206.42044 * 7 5 4 9 9 N 1.47022 * 107.27273 * 22.19371 * 8 7 5 10 10 C 1.34778 * 125.64663 * 181.09729 * 9 8 7 11 11 O 1.21587 * 119.99920 * 179.97438 * 10 9 8 12 12 N 1.34769 * 120.00412 * 359.95078 * 10 9 8 13 13 C 1.39237 * 120.00338 * 175.71060 * 12 10 9 14 14 C 1.39484 * 119.83906 * 215.02579 * 13 12 10 15 15 C 1.36376 * 120.17171 * 179.76190 * 14 13 12 16 16 C 1.40867 * 119.82678 * 0.51604 * 15 14 13 17 17 C 1.41158 * 120.16330 * 179.72127 * 16 15 14 18 18 H 1.08005 * 119.99466 * 214.80541 * 17 16 15 19 19 C 1.39894 * 119.99966 * 34.80047 * 17 16 15 20 20 N 1.30869 * 120.00070 * 355.56592 * 19 17 16 21 21 Si 1.86804 * 119.99595 * 175.56572 * 19 17 16 22 22 H 1.48493 * 109.47012 * 60.00175 * 21 19 17 23 23 H 1.48500 * 109.46529 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47051 * 300.00009 * 21 19 17 25 25 C 1.40875 * 119.67116 * 359.74282 * 16 15 14 26 26 C 1.36372 * 119.83012 * 359.97438 * 25 16 15 27 27 C 1.47419 * 108.70524 * 1.05553 * 9 8 7 28 28 H 1.09001 * 109.47394 * 296.04592 * 1 2 3 29 29 H 1.09002 * 109.46919 * 56.05075 * 1 2 3 30 30 H 1.09000 * 109.46527 * 176.04740 * 1 2 3 31 31 H 1.08996 * 109.47322 * 183.95190 * 3 2 1 32 32 H 1.08996 * 109.47284 * 303.95471 * 3 2 1 33 33 H 1.08996 * 109.47074 * 63.95675 * 3 2 1 34 34 H 1.08995 * 109.47608 * 306.05310 * 4 2 1 35 35 H 1.09001 * 109.47009 * 186.04750 * 4 2 1 36 36 H 1.09003 * 110.71869 * 324.78754 * 7 5 4 37 37 H 1.09000 * 110.72059 * 88.05278 * 7 5 4 38 38 H 1.09007 * 109.88492 * 262.77305 * 8 7 5 39 39 H 1.09004 * 109.88347 * 141.61017 * 8 7 5 40 40 H 0.97004 * 120.00102 * 355.71621 * 12 10 9 41 41 H 1.07999 * 119.91370 * 0.02962 * 14 13 12 42 42 H 1.08001 * 120.08786 * 180.26082 * 15 14 13 43 43 H 0.97000 * 120.00261 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.08061 * 179.97438 * 25 16 15 45 45 H 1.07999 * 119.91192 * 180.02562 * 26 25 16 46 46 H 1.08996 * 110.36915 * 217.03435 * 27 9 8 47 47 H 1.09002 * 110.36594 * 94.70608 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.6316 -2.2425 0.9704 6 1 0.5524 -2.3695 0.8841 7 6 2.2006 -3.0913 2.1380 8 6 2.3581 -4.4894 1.5042 9 7 2.4372 -4.3023 0.0481 10 6 2.5573 -5.2864 -0.8650 11 8 2.6134 -5.0139 -2.0486 12 7 2.6156 -6.5723 -0.4661 13 6 2.6496 -7.5938 -1.4117 14 6 2.0083 -8.8043 -1.1491 15 6 2.0332 -9.8076 -2.0725 16 6 2.7180 -9.6229 -3.2895 17 6 2.7533 -10.6587 -4.2478 18 1 3.6340 -10.8014 -4.8566 19 6 1.6476 -11.5004 -4.4090 20 7 0.6150 -11.3838 -3.6136 21 14 1.6452 -12.7908 -5.7597 22 1 2.7805 -13.7254 -5.5534 23 1 0.3676 -13.5467 -5.7198 24 1 1.7853 -12.1257 -7.0800 25 6 3.3679 -8.3994 -3.5453 26 6 3.3294 -7.4033 -2.6147 27 6 2.3624 -2.8600 -0.2480 28 1 -0.3634 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3632 -1.0253 -0.0708 31 1 3.0827 1.3434 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8724 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0798 -0.6609 1.1757 36 1 3.1666 -2.7035 2.4616 37 1 1.4978 -3.1221 2.9706 38 1 1.4956 -5.1082 1.7521 39 1 3.2715 -4.9605 1.8675 40 1 2.6339 -6.7864 0.4798 41 1 1.4871 -8.9459 -0.2139 42 1 1.5327 -10.7428 -1.8695 43 1 -0.1519 -11.9672 -3.7255 44 1 3.8953 -8.2508 -4.4760 45 1 3.8268 -6.4647 -2.8096 46 1 1.7906 -2.6891 -1.1600 47 1 3.3637 -2.4398 -0.3425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118796997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:10 Heat of formation + Delta-G solvation = 6.755879 kcal Electronic energy + Delta-G solvation = -25994.986670 eV Core-core repulsion = 22370.652657 eV Total energy + Delta-G solvation = -3624.334012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.23424 -38.71838 -37.39903 -36.48282 -34.32667 -32.96680 -31.93243 -29.56026 -29.44582 -28.73826 -27.90701 -26.58801 -24.81565 -23.47113 -22.05692 -21.36849 -20.73462 -20.22059 -19.26886 -17.86847 -17.19612 -16.79791 -15.99408 -15.58128 -15.55684 -15.11840 -15.01788 -14.56525 -14.43290 -13.85769 -13.69977 -13.26137 -12.89875 -12.82175 -12.69231 -12.64863 -12.53974 -12.22619 -12.03420 -12.00852 -11.75634 -11.61990 -11.33362 -11.19915 -11.10073 -11.06820 -10.95007 -10.80985 -10.65584 -10.01818 -9.45435 -9.38031 -9.15325 -8.80517 -8.67813 -8.43067 -7.45829 -6.74692 -6.53852 -4.25917 2.73027 2.96939 3.13270 3.15400 3.17821 3.23836 3.55457 3.76037 4.04091 4.29123 4.37519 4.47748 4.63490 4.78374 4.81846 4.92110 5.02597 5.04948 5.12848 5.21679 5.30274 5.39788 5.43511 5.47069 5.54821 5.57255 5.65794 5.72574 5.81562 5.98454 6.06469 6.25568 6.36209 6.54311 6.67192 6.67977 6.85530 7.01071 7.13675 7.25372 7.35487 7.49781 7.73634 7.95960 8.03794 8.16905 8.39149 8.53243 8.71687 9.00940 9.01345 9.19067 10.37455 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.002281 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.529065 B =12272.394201 C =12596.888608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.546 5.546 3 C 0.025 3.975 4 C 0.067 3.933 5 C -0.101 4.101 6 H 0.085 0.915 7 C -0.123 4.123 8 C 0.100 3.900 9 N -0.645 5.645 10 C 0.713 3.287 11 O -0.574 6.574 12 N -0.666 5.666 13 C 0.025 3.975 14 C -0.124 4.124 15 C -0.140 4.140 16 C 0.097 3.903 17 C -0.462 4.462 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.815 5.815 21 Si 0.915 3.085 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.267 1.267 25 C -0.203 4.203 26 C -0.087 4.087 27 C 0.145 3.855 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.390 0.610 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.277 0.723 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.103 18.677 14.171 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.061 4.061 5 C -0.120 4.120 6 H 0.104 0.896 7 C -0.162 4.162 8 C -0.024 4.024 9 N -0.385 5.385 10 C 0.416 3.584 11 O -0.450 6.450 12 N -0.312 5.312 13 C -0.067 4.067 14 C -0.145 4.145 15 C -0.160 4.160 16 C 0.095 3.905 17 C -0.493 4.493 18 H 0.093 0.907 19 C -0.145 4.145 20 N -0.442 5.442 21 Si 0.740 3.260 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.192 1.192 25 C -0.223 4.223 26 C -0.107 4.107 27 C 0.022 3.978 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.224 0.776 41 H 0.108 0.892 42 H 0.149 0.851 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.127 0.873 46 H 0.099 0.901 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.067 18.483 12.826 22.497 hybrid contribution -0.535 -0.227 0.707 0.915 sum -0.467 18.256 13.532 22.730 Atomic orbital electron populations 1.22454 0.87233 1.02686 1.00355 1.61949 1.08179 1.13793 1.43044 1.22377 1.00881 0.88655 1.00402 1.22075 1.00387 0.92280 0.91342 1.22422 1.00798 0.93544 0.95271 0.89628 1.22626 1.01897 0.94123 0.97522 1.21930 1.01301 0.97783 0.81367 1.47653 1.79035 1.06396 1.05417 1.15539 0.78482 0.80251 0.84156 1.90914 1.57522 1.81944 1.14669 1.42129 1.76697 1.03465 1.08870 1.17095 1.08089 0.88677 0.92868 1.20284 1.00612 0.94083 0.99475 1.21166 1.03291 0.98988 0.92581 1.17710 0.90132 0.91270 0.91437 1.19436 1.00776 1.11518 1.17593 0.90739 1.25857 0.95035 0.96953 0.96680 1.69756 1.05330 1.34856 1.34277 0.86265 0.78085 0.80211 0.81431 1.19125 1.20519 1.19154 1.20811 1.08555 0.93946 0.99013 1.20434 0.98378 0.98353 0.93560 1.21871 0.99881 0.78057 0.97968 0.95758 0.91311 0.90926 0.91266 0.91264 0.95833 0.94347 0.90327 0.90421 0.90124 0.91769 0.91765 0.77629 0.89241 0.85053 0.91216 0.88636 0.87341 0.90116 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.34 60.07 0.56 0.72 16 2 N -0.55 -4.58 4.84 -251.26 -1.22 -5.80 16 3 C 0.03 0.17 9.57 60.07 0.57 0.74 16 4 C 0.07 0.50 4.41 -3.82 -0.02 0.48 16 5 C -0.10 -0.87 2.90 -88.47 -0.26 -1.13 16 6 H 0.09 0.78 6.54 -51.93 -0.34 0.44 16 7 C -0.12 -0.88 6.42 -24.90 -0.16 -1.04 16 8 C 0.10 0.99 6.15 -3.07 -0.02 0.97 16 9 N -0.64 -9.33 3.33 -176.24 -0.59 -9.92 16 10 C 0.71 13.93 8.32 -86.92 -0.72 13.20 16 11 O -0.57 -13.72 14.01 5.29 0.07 -13.65 16 12 N -0.67 -12.70 5.26 -14.10 -0.07 -12.77 16 13 C 0.03 0.59 6.31 -83.57 -0.53 0.07 16 14 C -0.12 -2.93 9.90 -39.79 -0.39 -3.32 16 15 C -0.14 -3.70 8.62 -39.26 -0.34 -4.04 16 16 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 17 C -0.46 -12.65 9.02 -37.85 -0.34 -12.99 16 18 H 0.07 1.95 7.85 -52.48 -0.41 1.54 16 19 C 0.07 1.80 5.42 -17.34 -0.09 1.70 16 20 N -0.81 -21.71 10.60 55.54 0.59 -21.12 16 21 Si 0.91 19.49 29.56 -169.99 -5.03 14.46 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 C -0.20 -5.35 9.74 -39.26 -0.38 -5.73 16 26 C -0.09 -2.19 8.61 -39.79 -0.34 -2.54 16 27 C 0.15 1.83 6.21 -2.53 -0.02 1.81 16 28 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.07 0.59 6.44 -51.93 -0.33 0.26 16 31 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 35 H 0.08 0.55 8.02 -51.93 -0.42 0.14 16 36 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.39 6.00 7.81 -40.82 -0.32 5.68 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.13 3.56 6.13 -52.49 -0.32 3.24 16 43 H 0.28 6.78 8.30 -40.82 -0.34 6.45 16 44 H 0.10 2.39 8.06 -52.49 -0.42 1.96 16 45 H 0.11 2.74 6.22 -52.49 -0.33 2.42 16 46 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 47 H 0.06 0.77 8.00 -51.93 -0.42 0.35 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -32.31 376.09 -11.14 -43.45 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.50 Total: 8.69 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -3.07 Total: -9.01 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -1.29 Total: -49.61 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.07 Total: -13.65 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.31 -11.14 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118796997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.209 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds