Wall clock time and date at job start Tue Mar 31 2020 11:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99737 * 2 1 4 4 C 1.46902 * 111.00098 * 123.94794 * 2 1 3 5 5 C 1.53002 * 109.46626 * 66.05337 * 4 2 1 6 6 H 1.09003 * 110.88660 * 302.57075 * 5 4 2 7 7 C 1.55160 * 111.00420 * 178.64989 * 5 4 2 8 8 C 1.54317 * 102.94135 * 206.42044 * 7 5 4 9 9 N 1.47022 * 107.27273 * 22.19371 * 8 7 5 10 10 C 1.34778 * 125.64663 * 181.09729 * 9 8 7 11 11 O 1.21587 * 119.99920 * 179.97438 * 10 9 8 12 12 N 1.34769 * 120.00412 * 359.95078 * 10 9 8 13 13 C 1.39237 * 120.00338 * 175.71060 * 12 10 9 14 14 C 1.39484 * 119.83906 * 215.02579 * 13 12 10 15 15 C 1.36376 * 120.17171 * 179.76190 * 14 13 12 16 16 C 1.40867 * 119.82678 * 0.51604 * 15 14 13 17 17 C 1.41158 * 120.16330 * 179.72127 * 16 15 14 18 18 H 1.08005 * 119.99466 * 214.80541 * 17 16 15 19 19 C 1.39894 * 119.99966 * 34.80047 * 17 16 15 20 20 N 1.30869 * 120.00070 * 355.56592 * 19 17 16 21 21 Si 1.86804 * 119.99595 * 175.56572 * 19 17 16 22 22 H 1.48493 * 109.47012 * 60.00175 * 21 19 17 23 23 H 1.48500 * 109.46529 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47051 * 300.00009 * 21 19 17 25 25 C 1.40875 * 119.67116 * 359.74282 * 16 15 14 26 26 C 1.36372 * 119.83012 * 359.97438 * 25 16 15 27 27 C 1.47419 * 108.70524 * 1.05553 * 9 8 7 28 28 H 1.09001 * 109.47394 * 296.04592 * 1 2 3 29 29 H 1.09002 * 109.46919 * 56.05075 * 1 2 3 30 30 H 1.09000 * 109.46527 * 176.04740 * 1 2 3 31 31 H 1.08996 * 109.47322 * 183.95190 * 3 2 1 32 32 H 1.08996 * 109.47284 * 303.95471 * 3 2 1 33 33 H 1.08996 * 109.47074 * 63.95675 * 3 2 1 34 34 H 1.08995 * 109.47608 * 306.05310 * 4 2 1 35 35 H 1.09001 * 109.47009 * 186.04750 * 4 2 1 36 36 H 1.09003 * 110.71869 * 324.78754 * 7 5 4 37 37 H 1.09000 * 110.72059 * 88.05278 * 7 5 4 38 38 H 1.09007 * 109.88492 * 262.77305 * 8 7 5 39 39 H 1.09004 * 109.88347 * 141.61017 * 8 7 5 40 40 H 0.97004 * 120.00102 * 355.71621 * 12 10 9 41 41 H 1.07999 * 119.91370 * 0.02962 * 14 13 12 42 42 H 1.08001 * 120.08786 * 180.26082 * 15 14 13 43 43 H 0.97000 * 120.00261 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.08061 * 179.97438 * 25 16 15 45 45 H 1.07999 * 119.91192 * 180.02562 * 26 25 16 46 46 H 1.08996 * 110.36915 * 217.03435 * 27 9 8 47 47 H 1.09002 * 110.36594 * 94.70608 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.6316 -2.2425 0.9704 6 1 0.5524 -2.3695 0.8841 7 6 2.2006 -3.0913 2.1380 8 6 2.3581 -4.4894 1.5042 9 7 2.4372 -4.3023 0.0481 10 6 2.5573 -5.2864 -0.8650 11 8 2.6134 -5.0139 -2.0486 12 7 2.6156 -6.5723 -0.4661 13 6 2.6496 -7.5938 -1.4117 14 6 2.0083 -8.8043 -1.1491 15 6 2.0332 -9.8076 -2.0725 16 6 2.7180 -9.6229 -3.2895 17 6 2.7533 -10.6587 -4.2478 18 1 3.6340 -10.8014 -4.8566 19 6 1.6476 -11.5004 -4.4090 20 7 0.6150 -11.3838 -3.6136 21 14 1.6452 -12.7908 -5.7597 22 1 2.7805 -13.7254 -5.5534 23 1 0.3676 -13.5467 -5.7198 24 1 1.7853 -12.1257 -7.0800 25 6 3.3679 -8.3994 -3.5453 26 6 3.3294 -7.4033 -2.6147 27 6 2.3624 -2.8600 -0.2480 28 1 -0.3634 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3632 -1.0253 -0.0708 31 1 3.0827 1.3434 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8724 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0798 -0.6609 1.1757 36 1 3.1666 -2.7035 2.4616 37 1 1.4978 -3.1221 2.9706 38 1 1.4956 -5.1082 1.7521 39 1 3.2715 -4.9605 1.8675 40 1 2.6339 -6.7864 0.4798 41 1 1.4871 -8.9459 -0.2139 42 1 1.5327 -10.7428 -1.8695 43 1 -0.1519 -11.9672 -3.7255 44 1 3.8953 -8.2508 -4.4760 45 1 3.8268 -6.4647 -2.8096 46 1 1.7906 -2.6891 -1.1600 47 1 3.3637 -2.4398 -0.3425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118796997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:09 Heat of formation + Delta-G solvation = -13.625342 kcal Electronic energy + Delta-G solvation = -25995.870466 eV Core-core repulsion = 22370.652657 eV Total energy + Delta-G solvation = -3625.217808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60356 -39.91361 -38.88472 -37.52596 -36.14308 -34.75055 -33.04919 -31.46612 -30.60787 -30.31322 -28.45946 -27.67058 -26.41624 -24.59775 -23.23930 -22.71726 -22.52658 -21.02736 -20.74136 -19.35066 -19.08905 -18.08040 -17.28699 -16.99353 -16.49242 -16.32741 -16.11042 -15.82254 -15.57574 -15.29974 -14.85399 -14.55207 -14.48713 -14.05180 -13.96109 -13.93554 -13.56982 -13.32505 -13.21617 -13.18809 -12.95868 -12.84107 -12.74366 -12.59733 -12.46982 -12.35139 -11.96915 -11.85584 -11.80150 -11.46198 -11.39249 -11.23693 -11.00719 -10.65845 -9.65997 -9.45622 -9.23642 -8.67365 -8.48286 -6.30742 0.85206 1.15040 1.40195 1.49517 1.52637 1.65661 2.17515 2.26018 2.82552 2.96783 3.13053 3.63940 3.68225 3.71857 3.85899 4.26321 4.28242 4.37669 4.39438 4.46218 4.48489 4.54210 4.59859 4.68455 4.71740 4.79580 4.82876 4.90489 4.94600 4.99467 5.05843 5.06041 5.09525 5.14532 5.15908 5.27788 5.35376 5.44521 5.45940 5.69974 5.85867 6.05363 6.11215 6.13569 6.14800 6.23511 6.40810 6.69315 6.98205 7.02254 7.03462 7.62459 8.44505 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.002281 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.529065 B =12272.394201 C =12596.888608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.571 5.571 3 C 0.026 3.974 4 C 0.072 3.928 5 C -0.089 4.089 6 H 0.082 0.918 7 C -0.109 4.109 8 C 0.088 3.912 9 N -0.639 5.639 10 C 0.706 3.294 11 O -0.626 6.626 12 N -0.656 5.656 13 C 0.040 3.960 14 C -0.119 4.119 15 C -0.156 4.156 16 C 0.066 3.934 17 C -0.498 4.498 18 H 0.072 0.928 19 C 0.027 3.973 20 N -0.842 5.842 21 Si 0.989 3.011 22 H -0.257 1.257 23 H -0.268 1.268 24 H -0.266 1.266 25 C -0.219 4.219 26 C -0.098 4.098 27 C 0.142 3.858 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.412 0.588 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.285 0.715 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.047 0.953 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 19.428 16.671 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.295 5.295 3 C -0.122 4.122 4 C -0.056 4.056 5 C -0.108 4.108 6 H 0.100 0.900 7 C -0.148 4.148 8 C -0.034 4.034 9 N -0.377 5.377 10 C 0.409 3.591 11 O -0.507 6.507 12 N -0.304 5.304 13 C -0.054 4.054 14 C -0.140 4.140 15 C -0.177 4.177 16 C 0.063 3.937 17 C -0.529 4.529 18 H 0.091 0.909 19 C -0.185 4.185 20 N -0.470 5.470 21 Si 0.810 3.190 22 H -0.182 1.182 23 H -0.192 1.192 24 H -0.191 1.191 25 C -0.239 4.239 26 C -0.119 4.119 27 C 0.019 3.981 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.249 0.751 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.121 0.879 46 H 0.066 0.934 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.360 19.281 15.423 24.693 hybrid contribution -0.396 -0.290 0.030 0.492 sum -0.756 18.990 15.452 24.495 Atomic orbital electron populations 1.22413 0.87050 1.02133 1.00927 1.61941 1.08619 1.14906 1.44023 1.22376 1.00937 0.87918 1.00927 1.22060 1.00822 0.91000 0.91738 1.22349 1.00078 0.94566 0.93827 0.89995 1.22648 1.03492 0.91480 0.97135 1.22332 1.02543 1.00240 0.78268 1.47676 1.76945 1.06062 1.06998 1.15745 0.78278 0.80877 0.84222 1.90878 1.59710 1.82803 1.17335 1.41880 1.76635 1.02683 1.09222 1.17121 1.06053 0.89469 0.92760 1.20516 0.99998 0.93261 1.00205 1.21166 1.03909 0.99537 0.93041 1.18032 0.91295 0.91947 0.92407 1.19678 1.01736 1.12933 1.18547 0.90936 1.26745 0.94097 0.98718 0.98950 1.69818 1.05869 1.35724 1.35608 0.85147 0.78744 0.77298 0.77800 1.18157 1.19195 1.19116 1.20923 1.09143 0.94263 0.99595 1.20508 0.99091 0.97769 0.94516 1.21999 1.00013 0.77303 0.98796 0.94545 0.91485 0.91924 0.91065 0.91373 0.94752 0.92462 0.89760 0.88706 0.87358 0.90801 0.90255 0.75145 0.85740 0.86090 0.90488 0.88659 0.87861 0.93403 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.34 127.69 1.19 1.51 16 2 N -0.57 -8.77 4.84 -948.83 -4.59 -13.36 16 3 C 0.03 0.31 9.57 127.69 1.22 1.53 16 4 C 0.07 0.86 4.41 86.30 0.38 1.24 16 5 C -0.09 -1.32 2.90 -9.40 -0.03 -1.34 16 6 H 0.08 1.32 6.54 -2.39 -0.02 1.30 16 7 C -0.11 -1.11 6.42 31.78 0.20 -0.91 16 8 C 0.09 1.47 6.15 86.73 0.53 2.00 16 9 N -0.64 -17.71 3.33 -829.77 -2.76 -20.47 16 10 C 0.71 27.45 8.32 179.06 1.49 28.94 16 11 O -0.63 -30.85 14.01 -3.99 -0.06 -30.91 16 12 N -0.66 -24.31 5.26 -316.79 -1.67 -25.97 16 13 C 0.04 1.86 6.31 38.57 0.24 2.11 16 14 C -0.12 -5.58 9.90 22.14 0.22 -5.36 16 15 C -0.16 -8.43 8.62 22.48 0.19 -8.23 16 16 C 0.07 3.75 5.55 -21.27 -0.12 3.64 16 17 C -0.50 -28.18 9.02 23.39 0.21 -27.97 16 18 H 0.07 3.96 7.85 -2.91 -0.02 3.93 16 19 C 0.03 1.40 5.42 85.24 0.46 1.86 16 20 N -0.84 -45.49 10.60 21.82 0.23 -45.26 16 21 Si 0.99 40.13 29.56 68.60 2.03 42.16 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 25 C -0.22 -12.03 9.74 22.48 0.22 -11.81 16 26 C -0.10 -5.10 8.61 22.13 0.19 -4.91 16 27 C 0.14 3.48 6.21 86.86 0.54 4.01 16 28 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 30 H 0.06 0.98 6.44 -2.39 -0.02 0.97 16 31 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 32 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 33 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.06 0.52 8.12 -2.39 -0.02 0.50 16 35 H 0.08 0.93 8.02 -2.39 -0.02 0.92 16 36 H 0.09 0.71 8.04 -2.39 -0.02 0.70 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.41 11.63 7.81 -92.71 -0.72 10.91 16 41 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.12 6.72 6.13 -2.91 -0.02 6.70 16 43 H 0.28 13.97 8.30 -92.71 -0.77 13.20 16 44 H 0.10 5.04 8.06 -2.91 -0.02 5.01 16 45 H 0.10 5.43 6.22 -2.91 -0.02 5.41 16 46 H 0.05 1.49 8.04 -2.39 -0.02 1.47 16 47 H 0.06 1.51 8.00 -2.39 -0.02 1.49 16 Total: -1.00 -73.54 376.09 0.58 -72.96 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: 0.24 Total: 34.54 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 7.15 Total: -13.69 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -8.79 Total: -105.06 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.06 Total: -30.91 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -73.54 0.58 -72.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118796997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.337 kcal (2) G-P(sol) polarization free energy of solvation -73.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds