Wall clock time and date at job start Tue Mar 31 2020 11:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00285 * 2 1 4 4 C 1.39671 * 119.99960 * 179.97438 * 2 1 3 5 5 C 1.38937 * 120.07454 * 174.26146 * 4 2 1 6 6 C 1.38081 * 119.92436 * 180.02562 * 5 4 2 7 7 C 1.38309 * 120.07582 * 359.73119 * 6 5 4 8 8 C 1.38263 * 120.14836 * 0.54859 * 7 6 5 9 9 C 1.50697 * 119.96490 * 179.72480 * 8 7 6 10 10 H 1.08998 * 110.33587 * 197.46959 * 9 8 7 11 11 C 1.55381 * 110.44688 * 75.18972 * 9 8 7 12 12 C 1.55138 * 101.44384 * 204.06872 * 11 9 8 13 13 C 1.54318 * 103.17346 * 35.64283 * 12 11 9 14 14 N 1.47440 * 107.23796 * 337.63188 * 13 12 11 15 15 C 1.46901 * 110.99745 * 236.74103 * 14 13 12 16 16 C 1.50699 * 109.47329 * 290.12176 * 15 14 13 17 17 O 1.21291 * 119.99914 * 0.02562 * 16 15 14 18 18 N 1.34771 * 119.99894 * 180.02562 * 16 15 14 19 19 C 1.37103 * 119.99832 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99594 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00061 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00020 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99994 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47160 * 89.99668 * 23 21 19 25 25 H 1.48499 * 109.47050 * 209.99939 * 23 21 19 26 26 H 1.48500 * 109.47004 * 329.99631 * 23 21 19 27 27 C 1.38120 * 120.07415 * 359.44784 * 8 7 6 28 28 H 1.08997 * 109.47239 * 185.05760 * 1 2 3 29 29 H 1.08997 * 109.46835 * 305.05823 * 1 2 3 30 30 H 1.09002 * 109.46727 * 65.05663 * 1 2 3 31 31 H 1.08998 * 109.46977 * 269.99873 * 3 2 1 32 32 H 1.09001 * 109.47412 * 29.99436 * 3 2 1 33 33 H 1.09004 * 109.47569 * 149.99672 * 3 2 1 34 34 H 1.08002 * 120.03710 * 0.02562 * 5 4 2 35 35 H 1.08001 * 119.96515 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.92934 * 180.29352 * 7 6 5 37 37 H 1.09007 * 111.17069 * 86.01056 * 11 9 8 38 38 H 1.09002 * 111.00528 * 322.05675 * 11 9 8 39 39 H 1.08997 * 110.70744 * 277.17598 * 12 11 9 40 40 H 1.09000 * 110.70646 * 154.11124 * 12 11 9 41 41 H 1.09011 * 109.88421 * 97.03677 * 13 12 11 42 42 H 1.08994 * 109.89059 * 218.21931 * 13 12 11 43 43 H 1.08999 * 109.47191 * 50.12383 * 15 14 13 44 44 H 1.09001 * 109.46749 * 170.12184 * 15 14 13 45 45 H 0.96998 * 120.00176 * 0.02562 * 18 16 15 46 46 H 0.97001 * 120.00104 * 179.97438 * 22 21 19 47 47 H 1.07999 * 120.04062 * 180.25151 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2096 0.0005 5 6 3.5475 -1.2145 -0.1197 6 6 4.2347 -2.4121 -0.1193 7 6 3.5473 -3.6057 0.0061 8 6 2.1693 -3.6047 0.1202 9 6 1.4240 -4.9080 0.2504 10 1 0.3678 -4.7648 0.0220 11 6 1.5935 -5.4896 1.6812 12 6 1.3433 -7.0001 1.4311 13 6 1.9658 -7.2338 0.0385 14 7 2.0104 -5.9281 -0.6448 15 6 1.2931 -5.9795 -1.9257 16 6 2.0669 -6.8284 -2.9012 17 8 3.1129 -7.3406 -2.5625 18 7 1.5967 -7.0184 -4.1498 19 6 2.3010 -7.7903 -5.0374 20 1 3.2324 -8.2464 -4.7358 21 6 1.8160 -7.9867 -6.3246 22 7 2.4913 -8.7261 -7.1755 23 14 0.2047 -7.1984 -6.8460 24 1 0.4735 -5.8552 -7.4193 25 1 -0.4550 -8.0499 -7.8682 26 1 -0.6853 -7.0634 -5.6649 27 6 1.4757 -2.4104 0.1206 28 1 -0.3633 -1.0236 0.0906 29 1 -0.3633 0.5903 0.8412 30 1 -0.3633 0.4334 -0.9319 31 1 2.3792 1.5833 -1.0276 32 1 1.6085 2.0284 0.5137 33 1 3.1500 1.1384 0.5139 34 1 4.0853 -0.2826 -0.2133 35 1 5.3107 -2.4167 -0.2123 36 1 4.0876 -4.5408 0.0109 37 1 0.8498 -5.0784 2.3640 38 1 2.6025 -5.3176 2.0559 39 1 0.2752 -7.2168 1.4171 40 1 1.8479 -7.6043 2.1851 41 1 2.9753 -7.6310 0.1455 42 1 1.3497 -7.9295 -0.5310 43 1 0.3048 -6.4125 -1.7715 44 1 1.1894 -4.9704 -2.3247 45 1 0.7604 -6.6085 -4.4208 46 1 2.1525 -8.8635 -8.0740 47 1 0.3997 -2.4101 0.2138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118867748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:34 Heat of formation + Delta-G solvation = 20.768278 kcal Electronic energy + Delta-G solvation = -26694.594100 eV Core-core repulsion = 23070.867712 eV Total energy + Delta-G solvation = -3623.726389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03847 -38.92191 -37.65458 -36.01826 -33.89811 -31.96960 -31.78964 -31.46975 -30.06805 -28.75208 -27.23322 -26.76568 -24.85373 -24.00993 -22.17294 -21.45729 -21.01217 -19.50846 -19.19578 -18.15314 -17.37943 -16.27641 -15.77344 -15.50168 -15.35939 -15.21587 -15.13342 -14.77251 -14.24631 -13.93374 -13.81040 -13.54079 -13.16969 -12.97341 -12.86103 -12.76692 -12.56864 -12.31718 -12.23070 -12.16542 -12.06922 -11.75629 -11.52435 -11.27316 -11.10249 -11.01246 -10.91769 -10.65116 -10.55501 -10.50421 -9.92193 -9.73176 -9.49382 -8.63728 -8.47820 -8.10888 -7.91057 -7.25178 -6.25251 -3.75974 1.52891 1.79185 3.01665 3.06272 3.11017 3.18370 3.83223 3.90076 4.11353 4.15703 4.58880 4.73583 4.81201 4.86691 4.92981 5.04786 5.08440 5.10027 5.18889 5.25872 5.27780 5.36088 5.41329 5.42133 5.49446 5.58731 5.66375 5.69961 5.74832 5.80737 5.83579 5.89213 5.94212 5.97714 6.05469 6.14785 6.21887 6.33701 6.49713 6.78417 6.90423 6.97228 7.16895 7.28267 7.32019 7.51322 7.65686 8.21330 8.67600 9.02244 9.49633 9.92155 10.88222 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.003574 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.819769 B = 7831.416441 C = 9008.466584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.644 5.644 3 C 0.098 3.902 4 C 0.205 3.795 5 C -0.199 4.199 6 C -0.079 4.079 7 C -0.133 4.133 8 C -0.022 4.022 9 C 0.108 3.892 10 H 0.058 0.942 11 C -0.115 4.115 12 C -0.145 4.145 13 C 0.057 3.943 14 N -0.496 5.496 15 C 0.040 3.960 16 C 0.457 3.543 17 O -0.556 6.556 18 N -0.595 5.595 19 C -0.301 4.301 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.884 5.884 23 Si 0.878 3.122 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.195 4.195 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.369 0.631 46 H 0.272 0.728 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.471 17.086 18.239 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.358 5.358 3 C -0.046 4.046 4 C 0.105 3.895 5 C -0.221 4.221 6 C -0.098 4.098 7 C -0.153 4.153 8 C -0.024 4.024 9 C 0.000 4.000 10 H 0.076 0.924 11 C -0.153 4.153 12 C -0.184 4.184 13 C -0.071 4.071 14 N -0.220 5.220 15 C -0.092 4.092 16 C 0.242 3.758 17 O -0.437 6.437 18 N -0.235 5.235 19 C -0.430 4.430 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.525 5.525 23 Si 0.705 3.295 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.218 4.218 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.202 0.798 46 H 0.083 0.917 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.313 16.912 18.125 25.352 hybrid contribution -2.231 0.489 -0.704 2.391 sum -7.544 17.401 17.420 25.752 Atomic orbital electron populations 1.21640 0.79924 1.02966 1.00605 1.46192 1.04725 1.03106 1.81731 1.21535 0.97063 0.85026 1.00936 1.17692 0.91218 0.85353 0.95248 1.20613 0.92166 0.98491 1.10826 1.20937 0.99471 0.91982 0.97363 1.20879 0.93708 0.98115 1.02638 1.19393 0.93910 0.92544 0.96514 1.21535 0.95551 0.90250 0.92689 0.92375 1.22773 1.02613 0.94820 0.95061 1.22880 1.00760 0.96364 0.98390 1.22730 1.01846 0.90547 0.91971 1.63046 1.52319 1.04678 1.01917 1.22085 0.95048 1.00840 0.91225 1.19638 0.87775 0.85554 0.82842 1.90553 1.23942 1.51874 1.77334 1.42210 1.22516 1.47238 1.11582 1.19422 1.06822 1.25334 0.91397 0.86311 1.25015 0.98109 0.97311 0.95775 1.69622 1.38622 1.38185 1.06063 0.86689 0.83640 0.80058 0.79107 1.19662 1.20262 1.19591 1.20482 0.99169 0.90822 1.11325 0.90422 0.93021 0.93293 0.93704 0.91955 0.91471 0.86637 0.86353 0.85265 0.91034 0.90243 0.91833 0.90757 0.89762 0.92693 0.93371 0.89491 0.79850 0.91723 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.62 59.85 0.64 1.36 16 2 N -0.64 -6.53 3.41 -187.55 -0.64 -7.16 16 3 C 0.10 0.75 10.10 59.85 0.60 1.35 16 4 C 0.20 2.52 6.54 -83.79 -0.55 1.97 16 5 C -0.20 -2.44 9.16 -39.38 -0.36 -2.80 16 6 C -0.08 -1.03 10.04 -39.61 -0.40 -1.43 16 7 C -0.13 -1.94 9.18 -39.55 -0.36 -2.30 16 8 C -0.02 -0.30 5.04 -104.66 -0.53 -0.83 16 9 C 0.11 1.42 2.58 -67.08 -0.17 1.25 16 10 H 0.06 0.71 7.69 -51.93 -0.40 0.31 16 11 C -0.11 -1.27 6.51 -24.34 -0.16 -1.43 16 12 C -0.15 -1.67 6.93 -24.91 -0.17 -1.84 16 13 C 0.06 0.88 5.65 -2.84 -0.02 0.86 16 14 N -0.50 -8.12 3.81 -225.88 -0.86 -8.98 16 15 C 0.04 0.71 5.03 -4.98 -0.03 0.68 16 16 C 0.46 10.67 7.43 -10.99 -0.08 10.59 16 17 O -0.56 -15.11 15.12 5.55 0.08 -15.02 16 18 N -0.60 -14.61 5.09 -10.96 -0.06 -14.66 16 19 C -0.30 -8.69 10.16 -14.93 -0.15 -8.84 16 20 H 0.12 3.90 7.39 -52.48 -0.39 3.52 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -26.30 13.96 55.50 0.77 -25.53 16 23 Si 0.88 19.85 27.74 -169.99 -4.71 15.13 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 27 C -0.20 -2.44 8.94 -39.38 -0.35 -2.79 16 28 H 0.08 0.61 5.31 -51.93 -0.28 0.33 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.07 0.49 6.46 -51.93 -0.34 0.15 16 34 H 0.12 1.20 6.31 -52.49 -0.33 0.87 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.13 2.04 7.76 -52.49 -0.41 1.63 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.91 7.92 -51.93 -0.41 0.50 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 42 H 0.05 0.92 7.31 -51.93 -0.38 0.54 16 43 H 0.05 0.76 7.96 -51.93 -0.41 0.34 16 44 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 45 H 0.37 8.02 5.76 -40.82 -0.24 7.79 16 46 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.12 1.26 5.72 -52.49 -0.30 0.96 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -33.63 374.35 -9.22 -42.84 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -7.26 Total: 10.90 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.18 Total: -3.16 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.78 Total: -56.34 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.08 Total: -15.02 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.71 Total: 15.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.63 -9.22 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118867748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.613 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds