Wall clock time and date at job start Tue Mar 31 2020 11:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00285 * 2 1 4 4 C 1.39671 * 119.99960 * 179.97438 * 2 1 3 5 5 C 1.38937 * 120.07454 * 174.26146 * 4 2 1 6 6 C 1.38081 * 119.92436 * 180.02562 * 5 4 2 7 7 C 1.38309 * 120.07582 * 359.73119 * 6 5 4 8 8 C 1.38263 * 120.14836 * 0.54859 * 7 6 5 9 9 C 1.50697 * 119.96490 * 179.72480 * 8 7 6 10 10 H 1.08998 * 110.33587 * 197.46959 * 9 8 7 11 11 C 1.55381 * 110.44688 * 75.18972 * 9 8 7 12 12 C 1.55138 * 101.44384 * 204.06872 * 11 9 8 13 13 C 1.54318 * 103.17346 * 35.64283 * 12 11 9 14 14 N 1.47440 * 107.23796 * 337.63188 * 13 12 11 15 15 C 1.46901 * 110.99745 * 236.74103 * 14 13 12 16 16 C 1.50699 * 109.47329 * 290.12176 * 15 14 13 17 17 O 1.21291 * 119.99914 * 0.02562 * 16 15 14 18 18 N 1.34771 * 119.99894 * 180.02562 * 16 15 14 19 19 C 1.37103 * 119.99832 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99594 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00061 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00020 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99994 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47160 * 89.99668 * 23 21 19 25 25 H 1.48499 * 109.47050 * 209.99939 * 23 21 19 26 26 H 1.48500 * 109.47004 * 329.99631 * 23 21 19 27 27 C 1.38120 * 120.07415 * 359.44784 * 8 7 6 28 28 H 1.08997 * 109.47239 * 185.05760 * 1 2 3 29 29 H 1.08997 * 109.46835 * 305.05823 * 1 2 3 30 30 H 1.09002 * 109.46727 * 65.05663 * 1 2 3 31 31 H 1.08998 * 109.46977 * 269.99873 * 3 2 1 32 32 H 1.09001 * 109.47412 * 29.99436 * 3 2 1 33 33 H 1.09004 * 109.47569 * 149.99672 * 3 2 1 34 34 H 1.08002 * 120.03710 * 0.02562 * 5 4 2 35 35 H 1.08001 * 119.96515 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.92934 * 180.29352 * 7 6 5 37 37 H 1.09007 * 111.17069 * 86.01056 * 11 9 8 38 38 H 1.09002 * 111.00528 * 322.05675 * 11 9 8 39 39 H 1.08997 * 110.70744 * 277.17598 * 12 11 9 40 40 H 1.09000 * 110.70646 * 154.11124 * 12 11 9 41 41 H 1.09011 * 109.88421 * 97.03677 * 13 12 11 42 42 H 1.08994 * 109.89059 * 218.21931 * 13 12 11 43 43 H 1.08999 * 109.47191 * 50.12383 * 15 14 13 44 44 H 1.09001 * 109.46749 * 170.12184 * 15 14 13 45 45 H 0.96998 * 120.00176 * 0.02562 * 18 16 15 46 46 H 0.97001 * 120.00104 * 179.97438 * 22 21 19 47 47 H 1.07999 * 120.04062 * 180.25151 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2096 0.0005 5 6 3.5475 -1.2145 -0.1197 6 6 4.2347 -2.4121 -0.1193 7 6 3.5473 -3.6057 0.0061 8 6 2.1693 -3.6047 0.1202 9 6 1.4240 -4.9080 0.2504 10 1 0.3678 -4.7648 0.0220 11 6 1.5935 -5.4896 1.6812 12 6 1.3433 -7.0001 1.4311 13 6 1.9658 -7.2338 0.0385 14 7 2.0104 -5.9281 -0.6448 15 6 1.2931 -5.9795 -1.9257 16 6 2.0669 -6.8284 -2.9012 17 8 3.1129 -7.3406 -2.5625 18 7 1.5967 -7.0184 -4.1498 19 6 2.3010 -7.7903 -5.0374 20 1 3.2324 -8.2464 -4.7358 21 6 1.8160 -7.9867 -6.3246 22 7 2.4913 -8.7261 -7.1755 23 14 0.2047 -7.1984 -6.8460 24 1 0.4735 -5.8552 -7.4193 25 1 -0.4550 -8.0499 -7.8682 26 1 -0.6853 -7.0634 -5.6649 27 6 1.4757 -2.4104 0.1206 28 1 -0.3633 -1.0236 0.0906 29 1 -0.3633 0.5903 0.8412 30 1 -0.3633 0.4334 -0.9319 31 1 2.3792 1.5833 -1.0276 32 1 1.6085 2.0284 0.5137 33 1 3.1500 1.1384 0.5139 34 1 4.0853 -0.2826 -0.2133 35 1 5.3107 -2.4167 -0.2123 36 1 4.0876 -4.5408 0.0109 37 1 0.8498 -5.0784 2.3640 38 1 2.6025 -5.3176 2.0559 39 1 0.2752 -7.2168 1.4171 40 1 1.8479 -7.6043 2.1851 41 1 2.9753 -7.6310 0.1455 42 1 1.3497 -7.9295 -0.5310 43 1 0.3048 -6.4125 -1.7715 44 1 1.1894 -4.9704 -2.3247 45 1 0.7604 -6.6085 -4.4208 46 1 2.1525 -8.8635 -8.0740 47 1 0.3997 -2.4101 0.2138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118867748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:34 Heat of formation + Delta-G solvation = -1.751879 kcal Electronic energy + Delta-G solvation = -26695.570648 eV Core-core repulsion = 23070.867712 eV Total energy + Delta-G solvation = -3624.702936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13568 -40.26458 -39.13112 -36.87707 -35.96086 -33.77869 -33.08469 -32.72907 -30.94152 -29.48810 -28.44231 -28.10013 -25.84996 -25.62338 -23.18727 -22.36768 -22.16021 -21.19700 -20.48150 -20.06015 -18.29890 -17.58243 -17.28712 -16.75807 -16.50007 -16.37335 -16.13037 -15.87687 -15.65976 -15.30084 -14.96978 -14.75969 -14.58277 -14.30885 -14.14335 -13.84449 -13.73513 -13.59102 -13.33039 -13.20758 -12.96247 -12.81068 -12.76546 -12.51121 -12.42229 -12.26768 -12.04661 -11.97934 -11.95829 -11.61618 -11.49868 -11.46902 -10.60433 -10.39718 -10.23261 -9.57041 -9.18398 -8.40910 -8.08660 -6.01210 0.56634 0.81021 1.28599 1.34733 1.43041 1.97787 2.22630 2.31043 2.64790 3.01852 3.14850 3.25903 3.74238 3.84302 3.96742 4.04287 4.09869 4.20682 4.24843 4.35067 4.37699 4.40733 4.47248 4.52919 4.55647 4.63449 4.69576 4.73790 4.81369 4.88209 4.93239 4.95117 4.98549 5.00309 5.10374 5.15805 5.23492 5.38778 5.42308 5.53566 5.76586 5.85623 5.94270 6.00468 6.08587 6.24533 6.43939 6.61216 6.65382 6.89553 7.40946 7.98952 8.77078 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.003574 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.819769 B = 7831.416441 C = 9008.466584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.648 5.648 3 C 0.092 3.908 4 C 0.202 3.798 5 C -0.207 4.207 6 C -0.088 4.088 7 C -0.161 4.161 8 C -0.028 4.028 9 C 0.110 3.890 10 H 0.080 0.920 11 C -0.107 4.107 12 C -0.132 4.132 13 C 0.055 3.945 14 N -0.520 5.520 15 C 0.054 3.946 16 C 0.454 3.546 17 O -0.604 6.604 18 N -0.595 5.595 19 C -0.325 4.325 20 H 0.054 0.946 21 C -0.015 4.015 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.259 1.259 25 H -0.273 1.273 26 H -0.232 1.232 27 C -0.199 4.199 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.038 0.962 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.388 0.612 46 H 0.279 0.721 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.586 20.178 19.520 30.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.360 5.360 3 C -0.051 4.051 4 C 0.100 3.900 5 C -0.229 4.229 6 C -0.106 4.106 7 C -0.181 4.181 8 C -0.029 4.029 9 C 0.002 3.998 10 H 0.098 0.902 11 C -0.145 4.145 12 C -0.170 4.170 13 C -0.073 4.073 14 N -0.244 5.244 15 C -0.077 4.077 16 C 0.241 3.759 17 O -0.487 6.487 18 N -0.237 5.237 19 C -0.455 4.455 20 H 0.072 0.928 21 C -0.214 4.214 22 N -0.577 5.577 23 Si 0.784 3.216 24 H -0.183 1.183 25 H -0.198 1.198 26 H -0.156 1.156 27 C -0.221 4.221 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.223 0.777 46 H 0.088 0.912 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.448 20.041 19.438 29.474 hybrid contribution -0.793 -0.450 -1.067 1.404 sum -10.242 19.591 18.371 28.743 Atomic orbital electron populations 1.21811 0.78569 1.03550 1.01726 1.46482 1.05793 1.02978 1.80788 1.21695 0.97477 0.84572 1.01354 1.17891 0.91374 0.86410 0.94316 1.20802 0.92694 0.98641 1.10778 1.21079 1.00050 0.92115 0.97404 1.20781 0.94600 0.97528 1.05186 1.19479 0.93428 0.93392 0.96630 1.21638 0.96208 0.89004 0.92941 0.90238 1.22763 1.03046 0.94263 0.94380 1.22806 1.01627 0.96915 0.95650 1.22633 1.00134 0.90021 0.94474 1.62901 1.53556 1.05735 1.02250 1.21941 0.95138 1.00317 0.90311 1.20854 0.87314 0.84624 0.83063 1.90535 1.26346 1.53570 1.78243 1.42037 1.23021 1.47182 1.11476 1.18992 1.05953 1.27229 0.93297 0.92757 1.26089 1.03088 0.97355 0.94834 1.69805 1.41336 1.39748 1.06810 0.85382 0.77500 0.78913 0.79840 1.18315 1.19786 1.15550 1.20660 1.00198 0.90257 1.10995 0.90239 0.91220 0.92670 0.93614 0.89825 0.91346 0.85054 0.85713 0.87938 0.88050 0.91286 0.89800 0.89628 0.93023 0.94371 0.90182 0.87661 0.77691 0.91176 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 10.62 127.77 1.36 2.40 16 2 N -0.65 -11.13 3.41 -747.29 -2.55 -13.68 16 3 C 0.09 1.15 10.10 127.77 1.29 2.44 16 4 C 0.20 4.50 6.54 38.22 0.25 4.75 16 5 C -0.21 -4.83 9.16 22.40 0.21 -4.63 16 6 C -0.09 -2.32 10.04 22.25 0.22 -2.10 16 7 C -0.16 -4.76 9.18 22.29 0.20 -4.56 16 8 C -0.03 -0.72 5.04 -19.89 -0.10 -0.82 16 9 C 0.11 2.63 2.58 44.80 0.12 2.75 16 10 H 0.08 1.60 7.69 -2.39 -0.02 1.58 16 11 C -0.11 -2.11 6.51 32.15 0.21 -1.90 16 12 C -0.13 -2.75 6.93 31.77 0.22 -2.53 16 13 C 0.06 1.73 5.65 86.65 0.49 2.22 16 14 N -0.52 -16.82 3.81 -868.55 -3.31 -20.13 16 15 C 0.05 1.84 5.03 85.56 0.43 2.27 16 16 C 0.45 21.67 7.43 87.66 0.65 22.32 16 17 O -0.60 -34.86 15.12 -3.06 -0.05 -34.91 16 18 N -0.59 -29.37 5.09 -306.99 -1.56 -30.93 16 19 C -0.33 -19.68 10.16 84.04 0.85 -18.82 16 20 H 0.05 3.90 7.39 -2.91 -0.02 3.88 16 21 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 22 N -0.94 -57.70 13.96 21.66 0.30 -57.40 16 23 Si 0.96 39.94 27.74 68.60 1.90 41.84 16 24 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 26 H -0.23 -8.14 6.52 99.48 0.65 -7.49 16 27 C -0.20 -4.42 8.94 22.40 0.20 -4.22 16 28 H 0.08 0.93 5.31 -2.39 -0.01 0.91 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.08 0.69 8.07 -2.39 -0.02 0.67 16 33 H 0.07 0.83 6.46 -2.38 -0.02 0.82 16 34 H 0.13 2.53 6.31 -2.91 -0.02 2.51 16 35 H 0.12 2.95 8.06 -2.91 -0.02 2.92 16 36 H 0.10 3.51 7.76 -2.91 -0.02 3.48 16 37 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.07 1.52 7.92 -2.39 -0.02 1.50 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.04 1.29 7.31 -2.39 -0.02 1.28 16 43 H 0.08 2.24 7.96 -2.39 -0.02 2.22 16 44 H 0.11 3.21 8.07 -2.39 -0.02 3.19 16 45 H 0.39 15.99 5.76 -92.71 -0.53 15.45 16 46 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 47 H 0.14 2.42 5.72 -2.91 -0.02 2.40 16 Total: -1.00 -79.84 374.35 2.19 -77.65 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: 0.38 Total: 38.39 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 7.07 Total: -0.85 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -7.12 Total: -122.13 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.05 Total: -34.91 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.90 Total: 41.84 kcal Total: -79.84 2.19 -77.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118867748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.902 kcal (2) G-P(sol) polarization free energy of solvation -79.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds