Wall clock time and date at job start Tue Mar 31 2020 11:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 119.99694 * 2 1 4 4 C 1.39671 * 120.00176 * 179.97438 * 2 1 3 5 5 C 1.38932 * 120.07566 * 0.02562 * 4 2 1 6 6 C 1.38082 * 119.92261 * 179.97438 * 5 4 2 7 7 C 1.38303 * 120.07982 * 359.97438 * 6 5 4 8 8 C 1.38273 * 120.14816 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.96289 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.90678 * 160.70260 * 9 8 7 11 11 C 1.53994 * 109.91780 * 281.80679 * 9 8 7 12 12 C 1.54590 * 105.14312 * 120.77648 * 11 9 8 13 13 C 1.54940 * 102.92203 * 21.95574 * 12 11 9 14 14 N 1.47900 * 110.08124 * 39.49355 * 9 8 7 15 15 C 1.46898 * 111.00131 * 94.71022 * 14 9 8 16 16 C 1.50700 * 109.47287 * 169.99872 * 15 14 9 17 17 O 1.21291 * 119.99949 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00424 * 180.02562 * 16 15 14 19 19 C 1.37090 * 120.00359 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00460 * 359.97438 * 19 18 16 21 21 C 1.38954 * 120.00046 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00038 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00127 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47206 * 60.00066 * 23 21 19 25 25 H 1.48500 * 109.47375 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47061 * 300.00037 * 23 21 19 27 27 C 1.38123 * 120.07083 * 0.25408 * 8 7 6 28 28 H 1.09000 * 109.47377 * 270.00106 * 1 2 3 29 29 H 1.08994 * 109.47328 * 30.00303 * 1 2 3 30 30 H 1.09003 * 109.46583 * 150.00460 * 1 2 3 31 31 H 1.08997 * 109.46621 * 269.99769 * 3 2 1 32 32 H 1.08992 * 109.46927 * 29.99923 * 3 2 1 33 33 H 1.09000 * 109.46643 * 149.99909 * 3 2 1 34 34 H 1.08000 * 120.03777 * 359.95741 * 5 4 2 35 35 H 1.08000 * 119.95861 * 180.02562 * 6 5 4 36 36 H 1.07995 * 119.93173 * 180.02562 * 7 6 5 37 37 H 1.09005 * 110.30831 * 239.69098 * 11 9 8 38 38 H 1.09000 * 110.30875 * 1.85720 * 11 9 8 39 39 H 1.09004 * 110.72830 * 140.31216 * 12 11 9 40 40 H 1.09007 * 110.72508 * 263.42405 * 12 11 9 41 41 H 1.08998 * 110.66967 * 81.01745 * 13 12 11 42 42 H 1.09004 * 110.66758 * 204.15345 * 13 12 11 43 43 H 1.08992 * 109.47233 * 289.99929 * 15 14 9 44 44 H 1.08998 * 109.47153 * 50.00222 * 15 14 9 45 45 H 0.97005 * 119.99514 * 359.97438 * 18 16 15 46 46 H 0.96996 * 120.00207 * 180.02562 * 22 21 19 47 47 H 1.08005 * 120.03327 * 179.74848 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 1.4703 -2.4137 0.0005 6 6 2.1640 -3.6077 0.0005 7 6 3.5470 -3.6058 0.0000 8 6 4.2399 -2.4093 0.0000 9 6 5.7469 -2.4122 0.0000 10 1 6.1199 -1.4456 -0.3387 11 6 6.2709 -2.7094 1.4172 12 6 7.1239 -3.9905 1.2719 13 6 7.4872 -3.9959 -0.2343 14 7 6.2526 -3.4851 -0.8834 15 6 6.5401 -2.9681 -2.2281 16 6 7.2769 -4.0158 -3.0221 17 8 7.5365 -5.0879 -2.5178 18 7 7.6474 -3.7616 -4.2928 19 6 8.3172 -4.7149 -5.0153 20 1 8.5484 -5.6695 -4.5663 21 6 8.6996 -4.4525 -6.3252 22 7 8.4188 -3.2908 -6.8715 23 14 9.6129 -5.7511 -7.3095 24 1 8.7732 -6.9711 -7.4185 25 1 9.9041 -5.2283 -8.6686 26 1 10.8868 -6.0867 -6.6242 27 6 3.5523 -1.2113 0.0058 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3632 -0.8901 -0.5138 31 1 2.3791 1.5834 -1.0277 32 1 1.6083 2.0284 0.5138 33 1 3.1498 1.1385 0.5139 34 1 0.3903 -2.4159 0.0008 35 1 1.6258 -4.5440 0.0001 36 1 4.0871 -4.5410 -0.0004 37 1 6.8864 -1.8835 1.7739 38 1 5.4389 -2.8842 2.0993 39 1 8.0228 -3.9270 1.8852 40 1 6.5412 -4.8737 1.5341 41 1 8.3280 -3.3304 -0.4297 42 1 7.7093 -5.0079 -0.5728 43 1 5.6047 -2.7225 -2.7306 44 1 7.1562 -2.0724 -2.1489 45 1 7.4395 -2.9043 -4.6963 46 1 8.6854 -3.1078 -7.7860 47 1 4.0941 -0.2771 0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118867751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:38 Heat of formation + Delta-G solvation = 14.727637 kcal Electronic energy + Delta-G solvation = -26590.612207 eV Core-core repulsion = 22966.623877 eV Total energy + Delta-G solvation = -3623.988331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.00301 -38.86115 -37.49929 -35.93672 -33.92838 -31.87658 -31.68462 -31.10093 -29.99696 -28.70525 -27.12063 -26.56612 -24.81787 -24.17116 -22.06895 -21.44156 -20.81920 -19.45676 -19.12887 -17.82109 -17.35314 -16.02967 -15.80149 -15.38791 -15.29437 -15.18378 -14.99501 -14.45472 -14.30329 -14.02745 -13.79169 -13.67709 -13.14554 -12.83904 -12.80618 -12.79567 -12.49812 -12.25479 -12.16576 -11.94130 -11.85016 -11.50768 -11.42692 -11.12562 -10.99944 -10.89920 -10.72683 -10.57188 -10.39537 -10.30684 -10.18890 -9.69432 -9.44619 -8.58893 -8.31419 -7.96914 -7.83338 -7.22937 -6.39009 -3.79718 1.56891 1.82209 3.04105 3.21798 3.27294 3.31704 3.93852 3.98680 4.13976 4.33366 4.73368 4.81932 4.89349 4.97915 5.03359 5.10166 5.16037 5.18141 5.26185 5.29907 5.38221 5.38582 5.46668 5.52586 5.55023 5.71733 5.75185 5.80655 5.84450 5.91837 5.98997 6.03524 6.09009 6.11565 6.24479 6.32691 6.37157 6.45328 6.75331 6.79973 6.97086 7.00900 7.19870 7.35347 7.43459 7.54266 7.57686 8.08921 8.64913 9.20660 9.57193 10.09205 10.78749 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.003055 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.539894 B = 9162.927368 C =10130.333876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.643 5.643 3 C 0.096 3.904 4 C 0.205 3.795 5 C -0.202 4.202 6 C -0.080 4.080 7 C -0.137 4.137 8 C -0.019 4.019 9 C 0.099 3.901 10 H 0.055 0.945 11 C -0.119 4.119 12 C -0.126 4.126 13 C 0.038 3.962 14 N -0.485 5.485 15 C 0.039 3.961 16 C 0.445 3.555 17 O -0.580 6.580 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.194 4.194 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.119 0.881 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.542 9.012 15.703 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.357 5.357 3 C -0.048 4.048 4 C 0.105 3.895 5 C -0.224 4.224 6 C -0.099 4.099 7 C -0.157 4.157 8 C -0.020 4.020 9 C -0.009 4.009 10 H 0.073 0.927 11 C -0.157 4.157 12 C -0.164 4.164 13 C -0.089 4.089 14 N -0.209 5.209 15 C -0.093 4.093 16 C 0.230 3.770 17 O -0.465 6.465 18 N -0.199 5.199 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.216 4.216 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.146 0.854 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.136 0.864 43 H 0.106 0.894 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.791 8.126 15.751 21.857 hybrid contribution 0.783 0.877 -0.956 1.515 sum -12.008 9.003 14.795 21.075 Atomic orbital electron populations 1.21558 0.79912 1.02436 1.00740 1.46212 1.04687 1.03153 1.81646 1.21578 0.97184 0.84966 1.01043 1.17690 0.91008 0.85466 0.95288 1.20602 0.99135 0.91285 1.11372 1.20916 0.94406 0.96936 0.97622 1.20857 0.93229 0.98432 1.03163 1.19464 0.94132 0.92484 0.95963 1.21344 0.91532 0.94414 0.93651 0.92676 1.22410 0.99558 0.98268 0.95461 1.22569 0.99112 0.97604 0.97135 1.23482 0.90152 1.03735 0.91513 1.64444 1.27733 1.28465 1.00239 1.22062 1.00264 0.96090 0.90859 1.19701 0.84851 0.89114 0.83308 1.90429 1.60090 1.26157 1.69829 1.41842 1.50449 1.16987 1.10605 1.19648 1.31536 0.97329 0.94300 0.87948 1.25259 0.98172 0.97361 0.97141 1.69605 1.47233 1.22127 1.15387 0.85924 0.79767 0.80286 0.78276 1.19879 1.21010 1.19936 1.20468 0.91889 0.97926 1.11362 0.93798 0.91907 0.91380 0.93563 0.91945 0.91380 0.86649 0.86464 0.85354 0.91707 0.90999 0.91559 0.90912 0.94734 0.86359 0.89376 0.93548 0.77481 0.91846 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 10.19 59.85 0.61 1.36 16 2 N -0.64 -6.63 3.41 -187.55 -0.64 -7.27 16 3 C 0.10 0.78 10.20 59.85 0.61 1.39 16 4 C 0.21 2.58 6.55 -83.79 -0.55 2.03 16 5 C -0.20 -2.48 9.21 -39.38 -0.36 -2.84 16 6 C -0.08 -1.04 10.04 -39.61 -0.40 -1.44 16 7 C -0.14 -1.99 9.33 -39.54 -0.37 -2.36 16 8 C -0.02 -0.27 4.74 -104.65 -0.50 -0.77 16 9 C 0.10 1.42 2.65 -67.80 -0.18 1.24 16 10 H 0.06 0.77 7.44 -51.93 -0.39 0.38 16 11 C -0.12 -1.47 6.55 -25.38 -0.17 -1.63 16 12 C -0.13 -1.68 7.06 -24.87 -0.18 -1.85 16 13 C 0.04 0.66 5.30 -1.89 -0.01 0.65 16 14 N -0.48 -8.43 4.15 -225.38 -0.94 -9.37 16 15 C 0.04 0.74 5.52 -4.98 -0.03 0.71 16 16 C 0.44 10.66 7.49 -10.99 -0.08 10.58 16 17 O -0.58 -15.45 13.10 5.55 0.07 -15.37 16 18 N -0.56 -14.52 5.29 -10.96 -0.06 -14.58 16 19 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 23 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C -0.19 -2.53 8.84 -39.38 -0.35 -2.88 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 30 H 0.07 0.52 6.20 -51.93 -0.32 0.20 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 33 H 0.07 0.55 6.19 -51.93 -0.32 0.23 16 34 H 0.12 1.19 6.14 -52.49 -0.32 0.86 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.13 2.01 7.72 -52.49 -0.41 1.60 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.60 8.02 -51.93 -0.42 0.19 16 42 H 0.12 2.41 5.97 -51.93 -0.31 2.10 16 43 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 44 H 0.05 0.81 7.81 -51.93 -0.41 0.41 16 45 H 0.39 9.77 7.90 -40.82 -0.32 9.45 16 46 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.12 1.36 6.12 -52.48 -0.32 1.03 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -31.31 374.41 -9.64 -40.95 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -7.24 Total: 11.75 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -2.18 Total: -3.85 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.91 Total: -55.35 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.07 Total: -15.37 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.31 -9.64 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118867751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.675 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds