Wall clock time and date at job start Tue Mar 31 2020 11:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 119.99694 * 2 1 4 4 C 1.39671 * 120.00176 * 179.97438 * 2 1 3 5 5 C 1.38932 * 120.07566 * 0.02562 * 4 2 1 6 6 C 1.38082 * 119.92261 * 179.97438 * 5 4 2 7 7 C 1.38303 * 120.07982 * 359.97438 * 6 5 4 8 8 C 1.38273 * 120.14816 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.96289 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.90678 * 160.70260 * 9 8 7 11 11 C 1.53994 * 109.91780 * 281.80679 * 9 8 7 12 12 C 1.54590 * 105.14312 * 120.77648 * 11 9 8 13 13 C 1.54940 * 102.92203 * 21.95574 * 12 11 9 14 14 N 1.47900 * 110.08124 * 39.49355 * 9 8 7 15 15 C 1.46898 * 111.00131 * 94.71022 * 14 9 8 16 16 C 1.50700 * 109.47287 * 169.99872 * 15 14 9 17 17 O 1.21291 * 119.99949 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00424 * 180.02562 * 16 15 14 19 19 C 1.37090 * 120.00359 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00460 * 359.97438 * 19 18 16 21 21 C 1.38954 * 120.00046 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00038 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00127 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47206 * 60.00066 * 23 21 19 25 25 H 1.48500 * 109.47375 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47061 * 300.00037 * 23 21 19 27 27 C 1.38123 * 120.07083 * 0.25408 * 8 7 6 28 28 H 1.09000 * 109.47377 * 270.00106 * 1 2 3 29 29 H 1.08994 * 109.47328 * 30.00303 * 1 2 3 30 30 H 1.09003 * 109.46583 * 150.00460 * 1 2 3 31 31 H 1.08997 * 109.46621 * 269.99769 * 3 2 1 32 32 H 1.08992 * 109.46927 * 29.99923 * 3 2 1 33 33 H 1.09000 * 109.46643 * 149.99909 * 3 2 1 34 34 H 1.08000 * 120.03777 * 359.95741 * 5 4 2 35 35 H 1.08000 * 119.95861 * 180.02562 * 6 5 4 36 36 H 1.07995 * 119.93173 * 180.02562 * 7 6 5 37 37 H 1.09005 * 110.30831 * 239.69098 * 11 9 8 38 38 H 1.09000 * 110.30875 * 1.85720 * 11 9 8 39 39 H 1.09004 * 110.72830 * 140.31216 * 12 11 9 40 40 H 1.09007 * 110.72508 * 263.42405 * 12 11 9 41 41 H 1.08998 * 110.66967 * 81.01745 * 13 12 11 42 42 H 1.09004 * 110.66758 * 204.15345 * 13 12 11 43 43 H 1.08992 * 109.47233 * 289.99929 * 15 14 9 44 44 H 1.08998 * 109.47153 * 50.00222 * 15 14 9 45 45 H 0.97005 * 119.99514 * 359.97438 * 18 16 15 46 46 H 0.96996 * 120.00207 * 180.02562 * 22 21 19 47 47 H 1.08005 * 120.03327 * 179.74848 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 1.4703 -2.4137 0.0005 6 6 2.1640 -3.6077 0.0005 7 6 3.5470 -3.6058 0.0000 8 6 4.2399 -2.4093 0.0000 9 6 5.7469 -2.4122 0.0000 10 1 6.1199 -1.4456 -0.3387 11 6 6.2709 -2.7094 1.4172 12 6 7.1239 -3.9905 1.2719 13 6 7.4872 -3.9959 -0.2343 14 7 6.2526 -3.4851 -0.8834 15 6 6.5401 -2.9681 -2.2281 16 6 7.2769 -4.0158 -3.0221 17 8 7.5365 -5.0879 -2.5178 18 7 7.6474 -3.7616 -4.2928 19 6 8.3172 -4.7149 -5.0153 20 1 8.5484 -5.6695 -4.5663 21 6 8.6996 -4.4525 -6.3252 22 7 8.4188 -3.2908 -6.8715 23 14 9.6129 -5.7511 -7.3095 24 1 8.7732 -6.9711 -7.4185 25 1 9.9041 -5.2283 -8.6686 26 1 10.8868 -6.0867 -6.6242 27 6 3.5523 -1.2113 0.0058 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3632 -0.8901 -0.5138 31 1 2.3791 1.5834 -1.0277 32 1 1.6083 2.0284 0.5138 33 1 3.1498 1.1385 0.5139 34 1 0.3903 -2.4159 0.0008 35 1 1.6258 -4.5440 0.0001 36 1 4.0871 -4.5410 -0.0004 37 1 6.8864 -1.8835 1.7739 38 1 5.4389 -2.8842 2.0993 39 1 8.0228 -3.9270 1.8852 40 1 6.5412 -4.8737 1.5341 41 1 8.3280 -3.3304 -0.4297 42 1 7.7093 -5.0079 -0.5728 43 1 5.6047 -2.7225 -2.7306 44 1 7.1562 -2.0724 -2.1489 45 1 7.4395 -2.9043 -4.6963 46 1 8.6854 -3.1078 -7.7860 47 1 4.0941 -0.2771 0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118867751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:37 Heat of formation + Delta-G solvation = -4.478066 kcal Electronic energy + Delta-G solvation = -26591.445029 eV Core-core repulsion = 22966.623877 eV Total energy + Delta-G solvation = -3624.821152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17259 -40.24142 -39.01465 -36.85204 -35.95136 -33.46434 -33.00969 -32.66088 -30.90490 -29.48176 -28.32716 -28.04855 -26.02681 -25.61721 -23.13091 -22.52813 -21.98002 -21.05066 -20.44818 -19.85119 -18.34955 -17.51814 -17.14885 -16.57592 -16.45166 -16.21913 -16.15423 -15.93550 -15.84764 -15.60195 -15.13913 -14.64310 -14.38290 -14.16324 -14.02180 -13.68474 -13.54992 -13.49921 -13.39332 -13.15606 -12.91094 -12.87054 -12.77468 -12.46078 -12.43150 -12.32612 -12.14222 -12.01667 -11.84614 -11.73643 -11.44093 -11.36153 -10.58096 -10.17961 -10.01178 -9.57037 -9.30663 -8.46796 -8.08951 -5.95636 0.57754 0.82195 1.39157 1.40820 1.52033 2.03112 2.27643 2.31633 2.81196 3.05779 3.19868 3.33727 3.79475 3.85425 3.97575 4.10433 4.14807 4.25968 4.31304 4.36188 4.37160 4.43426 4.48845 4.53776 4.55861 4.66214 4.73604 4.74512 4.84598 4.87278 4.93708 4.95599 4.98313 5.01775 5.12528 5.21291 5.32053 5.35730 5.41442 5.43558 5.76546 5.83434 5.93241 6.01449 6.06909 6.22552 6.43966 6.59923 6.64940 7.12068 7.54295 8.10153 8.70674 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.003055 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.539894 B = 9162.927368 C =10130.333876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.647 5.647 3 C 0.090 3.910 4 C 0.202 3.798 5 C -0.207 4.207 6 C -0.084 4.084 7 C -0.160 4.160 8 C -0.027 4.027 9 C 0.100 3.900 10 H 0.063 0.937 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.038 3.962 14 N -0.498 5.498 15 C 0.053 3.947 16 C 0.442 3.558 17 O -0.610 6.610 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.081 0.919 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.202 4.202 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.395 0.605 46 H 0.278 0.722 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.520 10.675 16.459 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.360 5.360 3 C -0.053 4.053 4 C 0.100 3.900 5 C -0.230 4.230 6 C -0.103 4.103 7 C -0.180 4.180 8 C -0.029 4.029 9 C -0.008 4.008 10 H 0.081 0.919 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.090 4.090 14 N -0.223 5.223 15 C -0.079 4.079 16 C 0.230 3.770 17 O -0.496 6.496 18 N -0.210 5.210 19 C -0.462 4.462 20 H 0.099 0.901 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.225 4.225 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.084 0.916 45 H 0.228 0.772 46 H 0.087 0.913 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.796 9.832 16.519 23.662 hybrid contribution 0.993 0.406 -1.150 1.573 sum -12.803 10.238 15.369 22.471 Atomic orbital electron populations 1.21735 0.78476 1.03311 1.01646 1.46501 1.05801 1.02991 1.80695 1.21726 0.97564 0.84600 1.01370 1.17886 0.91143 0.86546 0.94431 1.20838 1.00182 0.90963 1.10975 1.21103 0.93949 0.98074 0.97142 1.20785 0.94032 0.97885 1.05346 1.19475 0.93947 0.92834 0.96606 1.21417 0.91797 0.93553 0.94041 0.91856 1.22394 0.99793 0.98240 0.94347 1.22500 1.00225 0.98295 0.94342 1.23311 0.90123 1.01274 0.94259 1.64406 1.27742 1.30178 0.99951 1.21893 0.99943 0.94745 0.91315 1.20594 0.83852 0.89691 0.82884 1.90430 1.60943 1.27878 1.70374 1.41916 1.51002 1.16807 1.11274 1.19638 1.33632 0.97429 0.95482 0.90143 1.26059 0.98378 0.99426 0.97448 1.69673 1.47436 1.23285 1.15878 0.84981 0.78428 0.77697 0.77187 1.19737 1.19477 1.19558 1.20586 0.92380 0.97917 1.11575 0.92796 0.90157 0.91455 0.93591 0.89737 0.91375 0.84730 0.85121 0.87373 0.89483 0.90239 0.89368 0.91194 0.95347 0.90286 0.88727 0.91650 0.77189 0.91297 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 10.19 127.77 1.30 2.45 16 2 N -0.65 -11.73 3.41 -747.29 -2.55 -14.27 16 3 C 0.09 1.24 10.20 127.77 1.30 2.54 16 4 C 0.20 4.69 6.55 38.22 0.25 4.94 16 5 C -0.21 -4.77 9.21 22.40 0.21 -4.57 16 6 C -0.08 -2.13 10.04 22.25 0.22 -1.91 16 7 C -0.16 -4.68 9.33 22.29 0.21 -4.47 16 8 C -0.03 -0.75 4.74 -19.88 -0.09 -0.85 16 9 C 0.10 2.75 2.65 44.31 0.12 2.87 16 10 H 0.06 1.64 7.44 -2.39 -0.02 1.63 16 11 C -0.11 -2.50 6.55 31.47 0.21 -2.29 16 12 C -0.12 -2.98 7.06 31.80 0.22 -2.75 16 13 C 0.04 1.32 5.30 86.65 0.46 1.78 16 14 N -0.50 -17.49 4.15 -866.96 -3.60 -21.09 16 15 C 0.05 2.02 5.52 85.56 0.47 2.49 16 16 C 0.44 21.93 7.49 87.66 0.66 22.58 16 17 O -0.61 -34.01 13.10 -3.06 -0.04 -34.05 16 18 N -0.57 -30.47 5.29 -306.99 -1.62 -32.09 16 19 C -0.33 -19.25 9.68 84.04 0.81 -18.44 16 20 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.80 13.05 21.66 0.28 -50.52 16 23 Si 0.99 43.63 29.55 68.60 2.03 45.65 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 27 C -0.20 -4.95 8.84 22.40 0.20 -4.75 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.74 8.07 -2.39 -0.02 0.73 16 30 H 0.07 0.86 6.20 -2.39 -0.01 0.85 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.79 8.07 -2.39 -0.02 0.77 16 33 H 0.07 0.93 6.19 -2.39 -0.01 0.92 16 34 H 0.13 2.48 6.14 -2.91 -0.02 2.47 16 35 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 36 H 0.11 3.53 7.72 -2.91 -0.02 3.50 16 37 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.08 1.72 7.68 -2.39 -0.02 1.71 16 39 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.07 1.83 8.14 -2.38 -0.02 1.82 16 41 H 0.03 1.01 8.02 -2.39 -0.02 0.99 16 42 H 0.08 3.41 5.97 -2.38 -0.01 3.39 16 43 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 44 H 0.07 2.25 7.81 -2.39 -0.02 2.24 16 45 H 0.39 20.14 7.90 -92.70 -0.73 19.40 16 46 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 47 H 0.13 2.74 6.12 -2.91 -0.02 2.72 16 Total: -1.00 -68.78 374.41 1.75 -67.02 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: 0.24 Total: 39.98 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 7.01 Total: -0.63 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -7.49 Total: -117.97 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.04 Total: -34.05 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -68.78 1.75 -67.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118867751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.546 kcal (2) G-P(sol) polarization free energy of solvation -68.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds