Wall clock time and date at job start Tue Mar 31 2020 11:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99571 * 2 1 4 4 C 1.50702 * 109.46729 * 269.99489 * 3 2 1 5 5 H 1.07994 * 120.00283 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99673 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00135 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00170 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47185 * 90.00606 * 8 6 4 10 10 H 1.48506 * 109.47322 * 210.00476 * 8 6 4 11 11 H 1.48503 * 109.47362 * 330.00301 * 8 6 4 12 12 C 1.39669 * 119.99748 * 179.97438 * 2 1 3 13 13 C 1.38905 * 120.07711 * 0.02562 * 12 2 1 14 14 C 1.38102 * 119.92398 * 179.72013 * 13 12 2 15 15 C 1.38284 * 120.07730 * 0.28542 * 14 13 12 16 16 C 1.50702 * 119.92910 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47147 * 89.99455 * 16 15 14 18 18 C 1.47192 * 110.99730 * 188.93861 * 17 16 15 19 19 C 1.52992 * 108.71530 * 167.62134 * 18 17 16 20 20 N 1.46008 * 110.04105 * 50.30806 * 19 18 17 21 21 C 1.46499 * 118.53747 * 161.86226 * 20 19 18 22 22 C 1.33717 * 122.92749 * 341.83921 * 20 19 18 23 23 O 1.21280 * 118.62804 * 181.68861 * 22 20 19 24 24 C 1.46902 * 110.99845 * 66.05155 * 17 16 15 25 25 C 1.38288 * 120.14784 * 0.02562 * 15 14 13 26 26 C 1.38104 * 120.07459 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.47417 * 270.00230 * 1 2 3 28 28 H 1.09009 * 109.47082 * 30.00401 * 1 2 3 29 29 H 1.09003 * 109.47201 * 150.00150 * 1 2 3 30 30 H 1.08994 * 109.47775 * 29.99713 * 3 2 1 31 31 H 1.09002 * 109.46961 * 150.00104 * 3 2 1 32 32 H 0.96997 * 120.00499 * 179.97438 * 7 6 4 33 33 H 1.08002 * 120.04044 * 0.02562 * 13 12 2 34 34 H 1.08008 * 119.96515 * 180.25651 * 14 13 12 35 35 H 1.08998 * 109.46900 * 209.99776 * 16 15 14 36 36 H 1.09005 * 109.46585 * 329.99345 * 16 15 14 37 37 H 1.09000 * 109.59645 * 287.40934 * 18 17 16 38 38 H 1.08999 * 109.59470 * 47.86414 * 18 17 16 39 39 H 1.08995 * 109.37927 * 290.13042 * 19 18 17 40 40 H 1.09004 * 109.28335 * 170.42183 * 19 18 17 41 41 H 1.09000 * 109.47249 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47248 * 299.97556 * 21 20 19 43 43 H 1.08993 * 109.47082 * 59.97853 * 21 20 19 44 44 H 1.09000 * 109.38154 * 293.81455 * 24 17 16 45 45 H 1.08998 * 109.38734 * 53.60710 * 24 17 16 46 46 H 1.08007 * 119.96217 * 179.97438 * 25 15 14 47 47 H 1.07998 * 120.03659 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8774 -1.6728 7 7 3.3456 3.2573 -2.9128 8 14 3.7336 3.9288 -0.2531 9 1 5.1067 3.5072 0.1236 10 1 3.7494 5.3555 -0.6650 11 1 2.8270 3.7598 0.9109 12 6 2.1633 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1640 -3.6076 -0.0048 15 6 3.5468 -3.6059 -0.0041 16 6 4.3004 -4.9109 -0.0093 17 7 4.5458 -5.3292 -1.3960 18 6 5.0887 -6.6963 -1.4463 19 6 5.0342 -7.1933 -2.8923 20 7 5.6305 -6.2032 -3.7845 21 6 6.0456 -6.6280 -5.1237 22 6 5.8141 -4.9260 -3.4339 23 8 6.2885 -4.1624 -4.2480 24 6 5.4568 -4.3970 -2.0736 25 6 4.2398 -2.4092 0.0024 26 6 3.5524 -1.2114 0.0088 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6084 2.0285 0.5137 31 1 3.1499 1.1385 0.5138 32 1 3.8224 4.0832 -3.0901 33 1 0.3903 -2.4156 -0.0003 34 1 1.6258 -4.5441 -0.0090 35 1 5.2525 -4.7827 0.5054 36 1 3.7110 -5.6727 0.5011 37 1 6.1221 -6.6923 -1.0996 38 1 4.4907 -7.3508 -0.8122 39 1 3.9957 -7.3593 -3.1787 40 1 5.5854 -8.1303 -2.9719 41 1 6.4675 -5.7779 -5.6599 42 1 6.7967 -7.4134 -5.0392 43 1 5.1816 -7.0085 -5.6683 44 1 4.9698 -3.4275 -2.1789 45 1 6.3646 -4.2834 -1.4812 46 1 5.3199 -2.4113 0.0033 47 1 4.0943 -0.2772 0.0143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127381105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:31 Heat of formation + Delta-G solvation = -0.820456 kcal Electronic energy + Delta-G solvation = -26614.849931 eV Core-core repulsion = 22990.187385 eV Total energy + Delta-G solvation = -3624.662547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57456 -40.44794 -38.57060 -37.28910 -36.13360 -34.71775 -32.14244 -31.97361 -30.78936 -30.12656 -29.34048 -27.27491 -26.19630 -25.25868 -23.89405 -23.13604 -22.82184 -20.98513 -19.61335 -19.10263 -18.28342 -17.96211 -17.71299 -17.06635 -16.84189 -16.30897 -16.09929 -15.80387 -15.61780 -15.24645 -15.09466 -14.78775 -14.77103 -14.37433 -14.27676 -14.22284 -13.72360 -13.42007 -13.36535 -13.28500 -13.11815 -13.05906 -12.84569 -12.69631 -12.53125 -12.42638 -12.25332 -12.05418 -11.88331 -11.76622 -11.43639 -10.98267 -10.84492 -10.40915 -9.76590 -9.65556 -9.41022 -8.35199 -7.91197 -6.41133 0.70664 0.82618 1.31736 1.33351 1.43958 1.45820 2.00744 2.28681 2.53805 2.75482 2.98639 3.26043 3.51832 3.87077 3.96202 4.05546 4.15465 4.23848 4.32565 4.34230 4.40645 4.48447 4.54025 4.60828 4.62166 4.63165 4.69910 4.74662 4.80164 4.81972 4.83960 4.89723 4.92476 5.03684 5.05878 5.09646 5.30505 5.37277 5.43949 5.59672 5.64537 5.75564 5.96719 6.02804 6.08638 6.24312 6.33631 6.58467 6.68684 6.87482 7.03802 7.24597 8.82557 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.003388 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.289099 B = 8261.725390 C = 9435.401188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.630 5.630 3 C 0.233 3.767 4 C -0.538 4.538 5 H 0.021 0.979 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.240 1.240 12 C 0.211 3.789 13 C -0.219 4.219 14 C -0.045 4.045 15 C -0.159 4.159 16 C 0.114 3.886 17 N -0.534 5.534 18 C 0.032 3.968 19 C 0.114 3.886 20 N -0.605 5.605 21 C 0.069 3.931 22 C 0.511 3.489 23 O -0.604 6.604 24 C 0.047 3.953 25 C -0.071 4.071 26 C -0.221 4.221 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.029 0.971 32 H 0.268 0.732 33 H 0.132 0.868 34 H 0.149 0.851 35 H 0.051 0.949 36 H 0.116 0.884 37 H 0.051 0.949 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.119 0.881 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -26.588 8.737 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.338 5.338 3 C 0.110 3.890 4 C -0.577 4.577 5 H 0.039 0.961 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.771 3.229 9 H -0.191 1.191 10 H -0.204 1.204 11 H -0.164 1.164 12 C 0.106 3.894 13 C -0.242 4.242 14 C -0.064 4.064 15 C -0.162 4.162 16 C -0.012 4.012 17 N -0.261 5.261 18 C -0.095 4.095 19 C -0.008 4.008 20 N -0.337 5.337 21 C -0.074 4.074 22 C 0.300 3.700 23 O -0.486 6.486 24 C -0.084 4.084 25 C -0.090 4.090 26 C -0.243 4.243 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.150 0.850 34 H 0.166 0.834 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.070 0.930 38 H 0.149 0.851 39 H 0.098 0.902 40 H 0.131 0.869 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.137 0.863 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.104 -25.903 7.981 27.128 hybrid contribution 1.158 1.629 -0.082 2.000 sum 2.262 -24.275 7.899 25.628 Atomic orbital electron populations 1.21635 0.79113 1.02429 1.01377 1.46702 1.05665 1.03337 1.78060 1.19314 0.92594 0.82533 0.94546 1.21687 1.36551 1.06716 0.92740 0.96058 1.25923 0.95457 0.98845 0.98586 1.70080 1.42686 1.24413 1.21560 0.85701 0.79818 0.77746 0.79633 1.19132 1.20450 1.16358 1.18237 0.91628 0.86588 0.92911 1.20860 1.00161 0.90872 1.12269 1.20932 0.93362 0.97236 0.94893 1.19548 0.94050 0.94081 1.08475 1.20977 0.98981 0.94117 0.87127 1.62543 1.44283 1.02122 1.17115 1.22712 1.00298 0.89616 0.96874 1.21855 0.99680 0.91083 0.88140 1.47509 1.60406 1.09008 1.16823 1.21855 1.01397 1.00969 0.83129 1.20546 0.77088 0.82437 0.89913 1.90708 1.48173 1.57030 1.52670 1.22115 0.97020 0.98106 0.91137 1.20874 0.99217 0.91655 0.97279 1.20773 0.93220 0.98693 1.11637 0.91791 0.92771 0.90807 0.94550 0.95353 0.92330 0.84983 0.83365 0.93051 0.86609 0.93037 0.85054 0.90152 0.86863 0.92275 0.89327 0.90464 0.89599 0.90290 0.86287 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.31 10.19 127.77 1.30 4.61 16 2 N -0.63 -26.93 2.99 -726.55 -2.17 -29.10 16 3 C 0.23 11.33 3.99 85.63 0.34 11.68 16 4 C -0.54 -32.07 9.94 25.60 0.25 -31.81 16 5 H 0.02 1.45 8.06 -2.91 -0.02 1.43 16 6 C 0.01 0.58 5.47 84.65 0.46 1.04 16 7 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 8 Si 0.95 44.22 27.47 68.60 1.88 46.10 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 12 C 0.21 8.46 6.55 38.21 0.25 8.71 16 13 C -0.22 -7.03 9.21 22.40 0.21 -6.82 16 14 C -0.05 -1.19 9.69 22.25 0.22 -0.98 16 15 C -0.16 -4.18 4.88 -19.84 -0.10 -4.27 16 16 C 0.11 1.98 5.11 85.56 0.44 2.41 16 17 N -0.53 -10.17 4.72 -905.43 -4.28 -14.44 16 18 C 0.03 0.34 5.60 86.24 0.48 0.82 16 19 C 0.11 1.26 6.64 86.47 0.57 1.83 16 20 N -0.61 -12.57 3.23 -850.20 -2.74 -15.31 16 21 C 0.07 1.21 10.55 127.77 1.35 2.56 16 22 C 0.51 15.28 7.57 87.68 0.66 15.94 16 23 O -0.60 -24.24 16.07 -3.03 -0.05 -24.29 16 24 C 0.05 1.24 4.94 85.42 0.42 1.67 16 25 C -0.07 -2.33 8.11 22.25 0.18 -2.14 16 26 C -0.22 -9.04 9.21 22.40 0.21 -8.83 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.96 8.07 -2.38 -0.02 1.94 16 29 H 0.07 2.22 6.20 -2.39 -0.01 2.20 16 30 H 0.04 1.69 7.13 -2.39 -0.02 1.68 16 31 H 0.03 1.37 5.61 -2.39 -0.01 1.36 16 32 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 33 H 0.13 3.68 6.14 -2.91 -0.02 3.67 16 34 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.05 0.81 7.99 -2.39 -0.02 0.79 16 36 H 0.12 1.31 7.88 -2.38 -0.02 1.29 16 37 H 0.05 0.51 8.08 -2.39 -0.02 0.49 16 38 H 0.13 0.56 7.91 -2.39 -0.02 0.54 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.11 0.51 8.13 -2.39 -0.02 0.49 16 41 H 0.06 1.44 6.67 -2.39 -0.02 1.43 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.09 2.93 6.57 -2.39 -0.02 2.91 16 45 H 0.08 1.87 8.05 -2.39 -0.02 1.85 16 46 H 0.12 3.50 8.03 -2.91 -0.02 3.48 16 47 H 0.10 4.43 6.13 -2.91 -0.02 4.41 16 Total: -1.00 -82.70 372.44 1.09 -81.61 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.90 Total: 19.90 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 7.25 Total: -3.59 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -8.89 Total: -119.73 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.10 kcal Total: -82.70 1.09 -81.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127381105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.787 kcal (2) G-P(sol) polarization free energy of solvation -82.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds