Wall clock time and date at job start Tue Mar 31 2020 11:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00209 * 2 1 4 4 C 1.34780 * 119.99619 * 179.97438 * 2 1 3 5 5 O 1.21582 * 120.00076 * 343.24711 * 4 2 1 6 6 N 1.34781 * 119.99888 * 163.24436 * 4 2 1 7 7 C 1.46918 * 120.63197 * 168.84745 * 6 4 2 8 8 C 1.53187 * 108.89445 * 126.46299 * 7 6 4 9 9 C 1.53042 * 109.31520 * 54.56426 * 8 7 6 10 10 N 1.46493 * 109.46447 * 178.61696 * 9 8 7 11 11 C 1.38856 * 120.00137 * 205.00197 * 10 9 8 12 12 C 1.39564 * 119.84397 * 359.72345 * 11 10 9 13 13 C 1.36334 * 120.16331 * 179.72271 * 12 11 10 14 14 C 1.40888 * 119.83384 * 0.55105 * 13 12 11 15 15 C 1.41142 * 120.15338 * 179.70422 * 14 13 12 16 16 H 1.08002 * 119.99939 * 209.32143 * 15 14 13 17 17 C 1.39862 * 119.99996 * 29.31883 * 15 14 13 18 18 N 1.30899 * 120.00356 * 9.73174 * 17 15 14 19 19 Si 1.86808 * 119.99702 * 189.73880 * 17 15 14 20 20 H 1.48492 * 109.47499 * 89.99779 * 19 17 15 21 21 H 1.48504 * 109.46709 * 210.00157 * 19 17 15 22 22 H 1.48507 * 109.46747 * 329.99678 * 19 17 15 23 23 C 1.40885 * 119.69028 * 359.71832 * 14 13 12 24 24 C 1.36335 * 119.83384 * 0.02562 * 23 14 13 25 25 C 1.53042 * 109.53608 * 298.63617 * 9 8 7 26 26 C 1.46963 * 120.65285 * 348.66361 * 6 4 2 27 27 H 1.09002 * 109.47340 * 269.99979 * 1 2 3 28 28 H 1.09004 * 109.46851 * 30.00280 * 1 2 3 29 29 H 1.09003 * 109.46881 * 150.00029 * 1 2 3 30 30 H 1.09000 * 109.47182 * 276.40634 * 3 2 1 31 31 H 1.08996 * 109.46963 * 36.41043 * 3 2 1 32 32 H 1.09000 * 109.47243 * 156.41001 * 3 2 1 33 33 H 1.09003 * 109.58881 * 6.60610 * 7 6 4 34 34 H 1.09002 * 109.58345 * 246.32124 * 7 6 4 35 35 H 1.09004 * 109.50251 * 174.51374 * 8 7 6 36 36 H 1.09006 * 109.50048 * 294.61089 * 8 7 6 37 37 H 1.08996 * 109.46140 * 58.63953 * 9 8 7 38 38 H 0.97003 * 120.00182 * 24.99460 * 10 9 8 39 39 H 1.08009 * 119.91454 * 359.97438 * 12 11 10 40 40 H 1.08008 * 120.08303 * 180.27699 * 13 12 11 41 41 H 0.97000 * 120.00343 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.08163 * 179.97438 * 23 14 13 43 43 H 1.08005 * 119.91772 * 179.97438 * 24 23 14 44 44 H 1.08996 * 109.49838 * 181.31322 * 25 9 8 45 45 H 1.09002 * 109.49494 * 301.38106 * 25 9 8 46 46 H 1.09002 * 109.46799 * 113.75023 * 26 6 4 47 47 H 1.09003 * 109.71234 * 353.47125 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5696 -2.1977 0.3045 6 7 3.4437 -1.1923 -0.3360 7 6 4.2523 -2.3979 -0.1094 8 6 4.9323 -2.7933 -1.4239 9 6 5.7225 -1.5992 -1.9642 10 7 6.4011 -1.9838 -3.2043 11 6 7.5470 -1.3105 -3.6062 12 6 8.0462 -0.2640 -2.8293 13 6 9.1741 0.3978 -3.2149 14 6 9.8293 0.0306 -4.4068 15 6 10.9939 0.7153 -4.8156 16 1 11.2298 0.8001 -5.8661 17 6 11.8424 1.2840 -3.8602 18 7 11.6657 1.0231 -2.5897 19 14 13.2277 2.4163 -4.3973 20 1 12.7366 3.8172 -4.4328 21 1 14.3542 2.3108 -3.4354 22 1 13.6937 2.0206 -5.7507 23 6 9.3165 -1.0230 -5.1890 24 6 8.1907 -1.6794 -4.7884 25 6 4.7663 -0.4378 -2.2454 26 6 4.0844 -0.0157 -0.9402 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 2.2799 1.6407 -1.0212 31 1 1.6630 1.9968 0.6100 32 1 3.1948 1.1124 0.4113 33 1 3.6095 -3.2108 0.2284 34 1 5.0100 -2.1928 0.6468 35 1 5.6106 -3.6278 -1.2460 36 1 4.1754 -3.0878 -2.1509 37 1 6.4625 -1.2895 -1.2263 38 1 6.0499 -2.7088 -3.7446 39 1 7.5401 0.0195 -1.9183 40 1 9.5618 1.2045 -2.6103 41 1 12.2544 1.4172 -1.9271 42 1 9.8134 -1.3094 -6.1040 43 1 7.7961 -2.4870 -5.3872 44 1 5.3263 0.4042 -2.6521 45 1 4.0113 -0.7543 -2.9651 46 1 4.8285 0.3861 -0.2525 47 1 3.3325 0.7451 -1.1501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132817621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:05 Heat of formation + Delta-G solvation = 40.091006 kcal Electronic energy + Delta-G solvation = -26628.946575 eV Core-core repulsion = 23006.058082 eV Total energy + Delta-G solvation = -3622.888492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88966 -38.54901 -37.24409 -36.04326 -34.88901 -33.16901 -31.43156 -30.97209 -29.47741 -28.44685 -28.33405 -26.61624 -24.61068 -23.46330 -23.13753 -21.44626 -20.70726 -20.04008 -19.39385 -17.32397 -17.20663 -16.61930 -16.43644 -16.12126 -15.37389 -14.91238 -14.75968 -14.46102 -14.21365 -13.97129 -13.85737 -13.82016 -13.14484 -13.10133 -12.78695 -12.69267 -12.45701 -12.42673 -12.06806 -11.92617 -11.81175 -11.51150 -11.26534 -11.15379 -11.05379 -10.92765 -10.68000 -10.44164 -10.40006 -10.08516 -9.67595 -9.28385 -9.25069 -9.07945 -8.57395 -8.53443 -7.51316 -6.56428 -6.36980 -4.07333 2.40233 2.91136 2.92351 3.08139 3.15051 3.18491 3.33349 3.52005 4.06463 4.19832 4.51247 4.72156 4.78740 4.89018 4.93955 4.97510 5.03851 5.16488 5.22994 5.27971 5.34821 5.43078 5.52134 5.55456 5.69207 5.75036 5.78642 5.87425 5.94110 6.08516 6.20160 6.22782 6.28896 6.41437 6.48789 6.72587 6.91058 6.92702 7.19198 7.36593 7.54305 7.65441 7.68515 7.83352 8.14802 8.28267 8.36477 8.48495 8.68565 8.79364 9.06975 9.14121 10.42725 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.002635 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.465558 B =10622.128252 C =11258.057445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.644 5.644 3 C 0.072 3.928 4 C 0.711 3.289 5 O -0.590 6.590 6 N -0.624 5.624 7 C 0.133 3.867 8 C -0.139 4.139 9 C 0.165 3.835 10 N -0.756 5.756 11 C 0.100 3.900 12 C -0.169 4.169 13 C -0.116 4.116 14 C 0.071 3.929 15 C -0.467 4.467 16 H 0.071 0.929 17 C 0.071 3.929 18 N -0.818 5.818 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.265 1.265 23 C -0.180 4.180 24 C -0.164 4.164 25 C -0.149 4.149 26 C 0.070 3.930 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.383 0.617 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.274 0.726 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.848 0.812 6.120 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.382 5.382 3 C -0.071 4.071 4 C 0.414 3.586 5 O -0.468 6.468 6 N -0.361 5.361 7 C 0.009 3.991 8 C -0.178 4.178 9 C 0.058 3.942 10 N -0.390 5.390 11 C 0.003 3.997 12 C -0.190 4.190 13 C -0.136 4.136 14 C 0.068 3.932 15 C -0.498 4.498 16 H 0.089 0.911 17 C -0.142 4.142 18 N -0.447 5.447 19 Si 0.732 3.268 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.190 1.190 23 C -0.201 4.201 24 C -0.186 4.186 25 C -0.189 4.189 26 C -0.052 4.052 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.216 0.784 39 H 0.107 0.893 40 H 0.139 0.861 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.048 0.398 6.671 18.311 hybrid contribution 0.736 0.345 -0.460 0.934 sum -16.312 0.743 6.210 17.470 Atomic orbital electron populations 1.21460 0.77808 1.02595 1.01637 1.46825 1.06920 1.04888 1.79611 1.22341 0.98166 0.85582 1.00972 1.15869 0.81191 0.83479 0.78076 1.90886 1.67789 1.32327 1.55813 1.47320 1.08505 1.15615 1.64657 1.21447 0.93908 0.87046 0.96677 1.22182 0.99568 0.98762 0.97313 1.20537 0.92870 0.92793 0.88013 1.43962 1.29067 1.40449 1.25502 1.17377 0.89654 0.96867 0.95807 1.20122 0.99879 0.99452 0.99597 1.21011 0.93407 1.00335 0.98803 1.17512 0.92597 0.90980 0.92116 1.19360 1.05632 1.30900 0.93955 0.91120 1.25764 0.98458 0.95430 0.94592 1.69804 1.36223 1.37279 1.01369 0.86354 0.80345 0.80779 0.79347 1.19676 1.20586 1.18968 1.20613 0.98682 0.98889 1.01887 1.19822 0.99174 1.02685 0.96943 1.22492 0.99207 1.00647 0.96589 1.23016 0.98589 0.88795 0.94816 0.93009 0.91400 0.91001 0.91765 0.91544 0.89651 0.88890 0.91515 0.90206 0.91463 0.90821 0.78427 0.89326 0.86138 0.91481 0.89071 0.89646 0.89939 0.91942 0.91349 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.87 10.36 59.85 0.62 1.49 16 2 N -0.64 -6.42 3.25 -214.12 -0.70 -7.11 16 3 C 0.07 0.48 8.51 59.85 0.51 0.99 16 4 C 0.71 9.37 7.94 -86.91 -0.69 8.68 16 5 O -0.59 -9.83 15.64 5.29 0.08 -9.75 16 6 N -0.62 -7.31 2.94 -178.47 -0.52 -7.83 16 7 C 0.13 1.53 6.44 -3.72 -0.02 1.51 16 8 C -0.14 -1.64 5.55 -26.61 -0.15 -1.79 16 9 C 0.16 2.28 2.10 -67.89 -0.14 2.13 16 10 N -0.76 -12.44 5.22 -52.00 -0.27 -12.71 16 11 C 0.10 2.08 6.65 -83.69 -0.56 1.52 16 12 C -0.17 -3.75 8.72 -39.77 -0.35 -4.09 16 13 C -0.12 -2.94 8.60 -39.27 -0.34 -3.28 16 14 C 0.07 1.88 5.55 -106.79 -0.59 1.29 16 15 C -0.47 -12.56 9.04 -37.87 -0.34 -12.90 16 16 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 17 C 0.07 1.82 5.26 -17.34 -0.09 1.73 16 18 N -0.82 -21.54 10.81 55.54 0.60 -20.94 16 19 Si 0.91 19.21 29.57 -169.99 -5.03 14.18 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.18 -4.41 9.74 -39.27 -0.38 -4.79 16 24 C -0.16 -3.60 9.82 -39.77 -0.39 -3.99 16 25 C -0.15 -1.86 5.56 -26.61 -0.15 -2.00 16 26 C 0.07 0.71 4.46 -3.69 -0.02 0.69 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 29 H 0.07 0.67 7.71 -51.93 -0.40 0.27 16 30 H 0.06 0.37 6.69 -51.93 -0.35 0.02 16 31 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.09 0.59 5.35 -51.93 -0.28 0.32 16 33 H 0.09 1.15 7.02 -51.93 -0.36 0.79 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.12 6.46 -51.93 -0.34 0.79 16 38 H 0.38 5.78 8.60 -40.82 -0.35 5.43 16 39 H 0.09 1.77 6.04 -52.48 -0.32 1.45 16 40 H 0.12 3.20 6.21 -52.48 -0.33 2.87 16 41 H 0.27 6.65 8.30 -40.82 -0.34 6.31 16 42 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 43 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 44 H 0.08 1.15 7.64 -51.93 -0.40 0.75 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.65 7.77 -51.93 -0.40 0.24 16 47 H 0.12 0.96 3.14 -74.13 -0.23 0.73 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -31.14 364.86 -10.52 -41.65 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -7.10 Total: 9.83 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -3.08 Total: -12.82 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.89 Total: -48.59 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.14 -10.52 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132817621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.743 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds