Wall clock time and date at job start Tue Mar 31 2020 11:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00209 * 2 1 4 4 C 1.34780 * 119.99619 * 179.97438 * 2 1 3 5 5 O 1.21582 * 120.00076 * 343.24711 * 4 2 1 6 6 N 1.34781 * 119.99888 * 163.24436 * 4 2 1 7 7 C 1.46918 * 120.63197 * 168.84745 * 6 4 2 8 8 C 1.53187 * 108.89445 * 126.46299 * 7 6 4 9 9 C 1.53042 * 109.31520 * 54.56426 * 8 7 6 10 10 N 1.46493 * 109.46447 * 178.61696 * 9 8 7 11 11 C 1.38856 * 120.00137 * 205.00197 * 10 9 8 12 12 C 1.39564 * 119.84397 * 359.72345 * 11 10 9 13 13 C 1.36334 * 120.16331 * 179.72271 * 12 11 10 14 14 C 1.40888 * 119.83384 * 0.55105 * 13 12 11 15 15 C 1.41142 * 120.15338 * 179.70422 * 14 13 12 16 16 H 1.08002 * 119.99939 * 209.32143 * 15 14 13 17 17 C 1.39862 * 119.99996 * 29.31883 * 15 14 13 18 18 N 1.30899 * 120.00356 * 9.73174 * 17 15 14 19 19 Si 1.86808 * 119.99702 * 189.73880 * 17 15 14 20 20 H 1.48492 * 109.47499 * 89.99779 * 19 17 15 21 21 H 1.48504 * 109.46709 * 210.00157 * 19 17 15 22 22 H 1.48507 * 109.46747 * 329.99678 * 19 17 15 23 23 C 1.40885 * 119.69028 * 359.71832 * 14 13 12 24 24 C 1.36335 * 119.83384 * 0.02562 * 23 14 13 25 25 C 1.53042 * 109.53608 * 298.63617 * 9 8 7 26 26 C 1.46963 * 120.65285 * 348.66361 * 6 4 2 27 27 H 1.09002 * 109.47340 * 269.99979 * 1 2 3 28 28 H 1.09004 * 109.46851 * 30.00280 * 1 2 3 29 29 H 1.09003 * 109.46881 * 150.00029 * 1 2 3 30 30 H 1.09000 * 109.47182 * 276.40634 * 3 2 1 31 31 H 1.08996 * 109.46963 * 36.41043 * 3 2 1 32 32 H 1.09000 * 109.47243 * 156.41001 * 3 2 1 33 33 H 1.09003 * 109.58881 * 6.60610 * 7 6 4 34 34 H 1.09002 * 109.58345 * 246.32124 * 7 6 4 35 35 H 1.09004 * 109.50251 * 174.51374 * 8 7 6 36 36 H 1.09006 * 109.50048 * 294.61089 * 8 7 6 37 37 H 1.08996 * 109.46140 * 58.63953 * 9 8 7 38 38 H 0.97003 * 120.00182 * 24.99460 * 10 9 8 39 39 H 1.08009 * 119.91454 * 359.97438 * 12 11 10 40 40 H 1.08008 * 120.08303 * 180.27699 * 13 12 11 41 41 H 0.97000 * 120.00343 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.08163 * 179.97438 * 23 14 13 43 43 H 1.08005 * 119.91772 * 179.97438 * 24 23 14 44 44 H 1.08996 * 109.49838 * 181.31322 * 25 9 8 45 45 H 1.09002 * 109.49494 * 301.38106 * 25 9 8 46 46 H 1.09002 * 109.46799 * 113.75023 * 26 6 4 47 47 H 1.09003 * 109.71234 * 353.47125 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5696 -2.1977 0.3045 6 7 3.4437 -1.1923 -0.3360 7 6 4.2523 -2.3979 -0.1094 8 6 4.9323 -2.7933 -1.4239 9 6 5.7225 -1.5992 -1.9642 10 7 6.4011 -1.9838 -3.2043 11 6 7.5470 -1.3105 -3.6062 12 6 8.0462 -0.2640 -2.8293 13 6 9.1741 0.3978 -3.2149 14 6 9.8293 0.0306 -4.4068 15 6 10.9939 0.7153 -4.8156 16 1 11.2298 0.8001 -5.8661 17 6 11.8424 1.2840 -3.8602 18 7 11.6657 1.0231 -2.5897 19 14 13.2277 2.4163 -4.3973 20 1 12.7366 3.8172 -4.4328 21 1 14.3542 2.3108 -3.4354 22 1 13.6937 2.0206 -5.7507 23 6 9.3165 -1.0230 -5.1890 24 6 8.1907 -1.6794 -4.7884 25 6 4.7663 -0.4378 -2.2454 26 6 4.0844 -0.0157 -0.9402 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 2.2799 1.6407 -1.0212 31 1 1.6630 1.9968 0.6100 32 1 3.1948 1.1124 0.4113 33 1 3.6095 -3.2108 0.2284 34 1 5.0100 -2.1928 0.6468 35 1 5.6106 -3.6278 -1.2460 36 1 4.1754 -3.0878 -2.1509 37 1 6.4625 -1.2895 -1.2263 38 1 6.0499 -2.7088 -3.7446 39 1 7.5401 0.0195 -1.9183 40 1 9.5618 1.2045 -2.6103 41 1 12.2544 1.4172 -1.9271 42 1 9.8134 -1.3094 -6.1040 43 1 7.7961 -2.4870 -5.3872 44 1 5.3263 0.4042 -2.6521 45 1 4.0113 -0.7543 -2.9651 46 1 4.8285 0.3861 -0.2525 47 1 3.3325 0.7451 -1.1501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132817621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:04 Heat of formation + Delta-G solvation = 21.836772 kcal Electronic energy + Delta-G solvation = -26629.738138 eV Core-core repulsion = 23006.058082 eV Total energy + Delta-G solvation = -3623.680055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80830 -40.00390 -38.61366 -36.93020 -36.31651 -34.82193 -32.56864 -32.15285 -31.29120 -30.01563 -29.06023 -27.60752 -26.17884 -24.53129 -24.23874 -23.00465 -22.09482 -21.43798 -20.47647 -19.11283 -18.23973 -17.71846 -17.53424 -17.22171 -16.84021 -16.51217 -15.69980 -15.61980 -15.26949 -15.12235 -15.00657 -14.82502 -14.54499 -14.31104 -14.02034 -13.93117 -13.66762 -13.52946 -13.32383 -13.30247 -13.09872 -12.81865 -12.75509 -12.65399 -12.35204 -12.17653 -12.14435 -11.70544 -11.55277 -11.48391 -11.18156 -11.08807 -10.95084 -10.23198 -9.98049 -9.36366 -9.34280 -8.44556 -8.09504 -6.01361 1.13797 1.22751 1.41792 1.53574 1.58161 1.60377 1.96838 2.30261 2.72561 2.87222 2.91242 3.71632 3.79867 3.88600 4.07290 4.09373 4.19563 4.31445 4.34645 4.42730 4.48527 4.50905 4.54043 4.60607 4.68686 4.76666 4.80027 4.87119 4.90694 4.91513 4.96550 5.06456 5.12259 5.18974 5.29189 5.33847 5.43337 5.49967 5.62764 5.74388 5.84311 5.86752 6.01025 6.22911 6.43825 6.71661 6.78673 6.91436 7.13130 7.17206 7.33177 7.42389 8.55830 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.002635 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.465558 B =10622.128252 C =11258.057445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.643 5.643 3 C 0.064 3.936 4 C 0.702 3.298 5 O -0.634 6.634 6 N -0.623 5.623 7 C 0.133 3.867 8 C -0.126 4.126 9 C 0.161 3.839 10 N -0.747 5.747 11 C 0.124 3.876 12 C -0.173 4.173 13 C -0.132 4.132 14 C 0.029 3.971 15 C -0.504 4.504 16 H 0.064 0.936 17 C 0.028 3.972 18 N -0.850 5.850 19 Si 0.977 3.023 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.264 1.264 23 C -0.191 4.191 24 C -0.173 4.173 25 C -0.142 4.142 26 C 0.074 3.926 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.394 0.606 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.280 0.720 42 H 0.093 0.907 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.092 1.539 6.504 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.381 5.381 3 C -0.077 4.077 4 C 0.405 3.595 5 O -0.515 6.515 6 N -0.360 5.360 7 C 0.010 3.990 8 C -0.165 4.165 9 C 0.055 3.945 10 N -0.379 5.379 11 C 0.025 3.975 12 C -0.195 4.195 13 C -0.152 4.152 14 C 0.027 3.973 15 C -0.536 4.536 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.480 5.480 19 Si 0.799 3.201 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.188 1.188 23 C -0.211 4.211 24 C -0.196 4.196 25 C -0.182 4.182 26 C -0.047 4.047 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.228 0.772 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.132 0.868 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.334 1.139 7.056 19.678 hybrid contribution 0.920 0.021 -0.545 1.070 sum -17.414 1.160 6.511 18.627 Atomic orbital electron populations 1.21596 0.76863 1.03255 1.02073 1.46988 1.07709 1.04973 1.78448 1.22541 0.98205 0.84499 1.02467 1.16144 0.81452 0.83879 0.78053 1.90851 1.68732 1.34159 1.57791 1.47347 1.08227 1.15999 1.64427 1.21429 0.93900 0.87048 0.96649 1.22052 0.99229 0.97956 0.97293 1.20713 0.92942 0.94275 0.86537 1.44033 1.27655 1.39949 1.26310 1.17445 0.89922 0.95544 0.94616 1.20269 0.99142 0.99548 1.00555 1.20940 0.94736 1.00783 0.98735 1.17826 0.93542 0.92486 0.93473 1.19568 1.06938 1.33101 0.94020 0.91805 1.26548 1.00698 0.96490 0.94468 1.69877 1.37483 1.38329 1.02282 0.85281 0.77223 0.78701 0.78871 1.18866 1.19720 1.18822 1.20792 0.99617 0.98789 1.01885 1.20098 0.98598 1.03184 0.97690 1.22374 0.98619 0.99362 0.97809 1.23169 0.99299 0.88617 0.93656 0.92729 0.88205 0.92831 0.90118 0.89168 0.89756 0.89848 0.90357 0.89587 0.91629 0.91768 0.77201 0.87136 0.88012 0.91015 0.88856 0.86834 0.91161 0.92279 0.90196 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.48 10.36 127.77 1.32 2.80 16 2 N -0.64 -11.36 3.25 -949.61 -3.09 -14.45 16 3 C 0.06 0.64 8.51 127.77 1.09 1.73 16 4 C 0.70 17.53 7.94 179.05 1.42 18.95 16 5 O -0.63 -20.96 15.64 -3.97 -0.06 -21.03 16 6 N -0.62 -13.42 2.94 -836.83 -2.46 -15.88 16 7 C 0.13 2.86 6.44 86.36 0.56 3.42 16 8 C -0.13 -2.73 5.55 30.67 0.17 -2.56 16 9 C 0.16 4.09 2.10 45.02 0.09 4.19 16 10 N -0.75 -22.81 5.22 -318.42 -1.66 -24.47 16 11 C 0.12 4.98 6.65 38.67 0.26 5.23 16 12 C -0.17 -7.60 8.72 22.15 0.19 -7.40 16 13 C -0.13 -6.86 8.60 22.47 0.19 -6.67 16 14 C 0.03 1.61 5.55 -21.27 -0.12 1.50 16 15 C -0.50 -28.13 9.04 23.38 0.21 -27.92 16 16 H 0.06 3.48 7.86 -2.91 -0.02 3.45 16 17 C 0.03 1.48 5.26 85.22 0.45 1.93 16 18 N -0.85 -45.94 10.81 21.81 0.24 -45.70 16 19 Si 0.98 40.05 29.57 68.60 2.03 42.08 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 C -0.19 -9.42 9.74 22.47 0.22 -9.21 16 24 C -0.17 -7.41 9.82 22.15 0.22 -7.19 16 25 C -0.14 -3.20 5.56 30.67 0.17 -3.03 16 26 C 0.07 1.29 4.46 86.35 0.39 1.68 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.75 8.07 -2.39 -0.02 0.73 16 29 H 0.05 0.96 7.71 -2.39 -0.02 0.94 16 30 H 0.08 0.59 6.69 -2.39 -0.02 0.58 16 31 H 0.09 0.54 8.12 -2.39 -0.02 0.52 16 32 H 0.08 0.89 5.35 -2.39 -0.01 0.88 16 33 H 0.08 2.00 7.02 -2.39 -0.02 1.98 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.06 1.81 6.46 -2.39 -0.02 1.79 16 38 H 0.39 10.76 8.60 -92.71 -0.80 9.96 16 39 H 0.11 4.27 6.04 -2.91 -0.02 4.25 16 40 H 0.10 5.61 6.21 -2.91 -0.02 5.59 16 41 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 42 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 43 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 44 H 0.07 1.80 7.64 -2.39 -0.02 1.78 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.08 1.27 7.77 -2.39 -0.02 1.25 16 47 H 0.14 1.83 3.14 -23.24 -0.07 1.76 16 Total: -1.00 -69.71 364.86 1.95 -67.77 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.12 Total: 34.23 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 6.83 Total: -22.55 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -6.97 Total: -100.50 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.06 Total: -21.03 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -69.71 1.95 -67.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132817621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.604 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds