Wall clock time and date at job start Tue Mar 31 2020 11:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99537 * 2 1 4 4 C 1.50701 * 109.47368 * 269.99757 * 3 2 1 5 5 H 1.08001 * 119.99838 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00294 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00166 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99705 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47119 * 89.99914 * 8 6 4 10 10 H 1.48501 * 109.46975 * 209.99510 * 8 6 4 11 11 H 1.48495 * 109.47212 * 329.99598 * 8 6 4 12 12 C 1.39671 * 120.00044 * 180.02562 * 2 1 3 13 13 C 1.38908 * 120.07423 * 359.97438 * 12 2 1 14 14 C 1.38105 * 119.92530 * 180.02562 * 13 12 2 15 15 C 1.38285 * 120.07240 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.92625 * 179.97438 * 15 14 13 17 17 N 1.46907 * 109.46783 * 89.99926 * 16 15 14 18 18 C 1.47887 * 111.01481 * 69.12675 * 17 16 15 19 19 C 1.54908 * 104.77420 * 146.33028 * 18 17 16 20 20 C 1.55138 * 101.68619 * 322.97931 * 19 18 17 21 21 H 1.09003 * 110.70516 * 277.25131 * 20 19 18 22 22 C 1.50696 * 110.70648 * 154.02039 * 20 19 18 23 23 N 1.34783 * 120.00367 * 61.45198 * 22 20 19 24 24 O 1.21286 * 119.99930 * 241.45069 * 22 20 19 25 25 C 1.47444 * 110.99660 * 190.00363 * 17 16 15 26 26 C 1.38290 * 120.15348 * 0.27152 * 15 14 13 27 27 C 1.38106 * 120.06788 * 359.44902 * 26 15 14 28 28 H 1.08997 * 109.47409 * 269.99924 * 1 2 3 29 29 H 1.09000 * 109.47402 * 29.99929 * 1 2 3 30 30 H 1.08999 * 109.46973 * 149.99765 * 1 2 3 31 31 H 1.09000 * 109.47380 * 30.00486 * 3 2 1 32 32 H 1.09007 * 109.46840 * 150.00190 * 3 2 1 33 33 H 0.97000 * 119.99569 * 180.02562 * 7 6 4 34 34 H 1.08004 * 120.03972 * 0.04753 * 13 12 2 35 35 H 1.07998 * 119.96878 * 180.02562 * 14 13 12 36 36 H 1.09005 * 109.47119 * 330.00490 * 16 15 14 37 37 H 1.08994 * 109.47374 * 209.99698 * 16 15 14 38 38 H 1.08993 * 110.35657 * 27.51601 * 18 17 16 39 39 H 1.09005 * 110.40536 * 265.16436 * 18 17 16 40 40 H 1.09002 * 110.99023 * 204.86730 * 19 18 17 41 41 H 1.08995 * 110.99233 * 81.08878 * 19 18 17 42 42 H 0.97004 * 119.99341 * 0.02562 * 23 22 20 43 43 H 0.96998 * 120.00397 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.89066 * 117.34098 * 25 17 16 45 45 H 1.09001 * 109.89084 * 356.14657 * 25 17 16 46 46 H 1.07994 * 119.96639 * 179.70827 * 26 15 14 47 47 H 1.08004 * 120.03446 * 180.27930 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8776 -1.6728 7 7 3.3456 3.2575 -2.9127 8 14 3.7348 3.9282 -0.2529 9 1 5.1082 3.5060 0.1227 10 1 3.7507 5.3550 -0.6642 11 1 2.8290 3.7587 0.9116 12 6 2.1634 -1.2096 -0.0005 13 6 1.4704 -2.4135 -0.0005 14 6 2.1640 -3.6077 -0.0005 15 6 3.5469 -3.6058 0.0000 16 6 4.3005 -4.9109 0.0006 17 7 4.5458 -5.3352 -1.3843 18 6 5.5196 -4.4418 -2.0481 19 6 6.3094 -5.3637 -3.0104 20 6 6.4144 -6.6694 -2.1792 21 1 7.2446 -6.6124 -1.4752 22 6 6.5617 -7.8661 -3.0832 23 7 7.6276 -7.9650 -3.9022 24 8 5.7211 -8.7404 -3.0737 25 6 5.0659 -6.7141 -1.4301 26 6 4.2399 -2.4091 0.0062 27 6 3.5525 -1.2113 0.0004 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6083 2.0284 0.5139 32 1 3.1499 1.1385 0.5138 33 1 3.8230 4.0831 -3.0898 34 1 0.3904 -2.4156 -0.0009 35 1 1.6260 -4.5441 -0.0010 36 1 3.7112 -5.6705 0.5143 37 1 5.2527 -4.7804 0.5147 38 1 6.1900 -3.9980 -1.3121 39 1 5.0011 -3.6636 -2.6083 40 1 7.2974 -4.9540 -3.2206 41 1 5.7544 -5.5319 -3.9333 42 1 8.3000 -7.2659 -3.9094 43 1 7.7226 -8.7354 -4.4838 44 1 4.3662 -7.3568 -1.9643 45 1 5.2166 -7.0875 -0.4172 46 1 5.3199 -2.4112 0.0114 47 1 4.0943 -0.2771 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157175224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:01 Heat of formation + Delta-G solvation = -22.037133 kcal Electronic energy + Delta-G solvation = -26116.365882 eV Core-core repulsion = 22490.783311 eV Total energy + Delta-G solvation = -3625.582571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.19473 -40.42567 -39.02634 -37.22340 -34.86833 -34.67562 -33.37209 -31.97873 -30.76844 -30.11253 -29.83630 -27.33275 -25.69804 -23.90188 -23.69671 -22.84084 -21.89294 -20.95593 -20.80929 -19.07016 -18.48086 -18.18643 -17.84394 -16.97536 -16.79594 -16.31736 -16.09613 -15.77290 -15.48109 -15.27334 -14.98882 -14.88944 -14.65730 -14.48559 -14.33306 -14.06729 -13.69471 -13.46056 -13.31050 -13.17137 -12.99518 -12.77082 -12.64253 -12.41650 -12.36241 -12.17082 -12.02899 -11.82087 -11.77001 -11.70681 -11.40830 -10.96253 -10.81498 -10.64941 -10.39364 -9.64721 -9.17630 -8.32526 -7.89479 -6.37897 0.72287 0.84604 1.34884 1.35897 1.46641 1.61468 2.31204 2.54639 2.57711 2.96617 3.01280 3.32421 3.53266 3.67960 3.97798 4.04751 4.16034 4.24675 4.29451 4.37214 4.39606 4.45177 4.47695 4.60793 4.68257 4.70009 4.78047 4.80614 4.83527 4.90570 4.92597 5.02548 5.05846 5.09857 5.14086 5.21347 5.32012 5.46393 5.61013 5.66621 5.90264 5.91154 6.10690 6.12816 6.17123 6.25839 6.45779 6.60972 6.71007 6.88306 7.27606 7.34703 8.84989 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.002777 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.201542 B =10081.651937 C =11112.362802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.630 5.630 3 C 0.232 3.768 4 C -0.535 4.535 5 H 0.023 0.977 6 C 0.012 3.988 7 N -0.946 5.946 8 Si 0.947 3.053 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.244 1.244 12 C 0.210 3.790 13 C -0.218 4.218 14 C -0.054 4.054 15 C -0.153 4.153 16 C 0.109 3.891 17 N -0.540 5.540 18 C 0.043 3.957 19 C -0.110 4.110 20 C -0.125 4.125 21 H 0.132 0.868 22 C 0.527 3.473 23 N -0.835 5.835 24 O -0.591 6.591 25 C 0.057 3.943 26 C -0.064 4.064 27 C -0.215 4.215 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.268 0.732 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.418 0.582 43 H 0.407 0.593 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.127 0.873 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.234 -19.348 5.717 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.338 5.338 3 C 0.110 3.890 4 C -0.574 4.574 5 H 0.041 0.959 6 C -0.186 4.186 7 N -0.586 5.586 8 Si 0.769 3.231 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.168 1.168 12 C 0.106 3.894 13 C -0.241 4.241 14 C -0.073 4.073 15 C -0.155 4.155 16 C -0.019 4.019 17 N -0.265 5.265 18 C -0.084 4.084 19 C -0.148 4.148 20 C -0.147 4.147 21 H 0.150 0.850 22 C 0.312 3.688 23 N -0.399 5.399 24 O -0.471 6.471 25 C -0.071 4.071 26 C -0.083 4.083 27 C -0.237 4.237 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.147 0.853 35 H 0.153 0.847 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.130 0.870 41 H 0.085 0.915 42 H 0.249 0.751 43 H 0.238 0.762 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.145 0.855 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.088 -19.443 5.506 21.766 hybrid contribution 1.126 1.064 -0.103 1.552 sum 9.214 -18.379 5.403 21.258 Atomic orbital electron populations 1.21618 0.79300 1.02384 1.01268 1.46693 1.05564 1.03356 1.78164 1.19334 0.92598 0.82361 0.94747 1.21655 1.36438 1.06710 0.92622 0.95861 1.25868 0.95505 0.98719 0.98475 1.70071 1.42705 1.24428 1.21403 0.85732 0.79926 0.77765 0.79674 1.18807 1.20631 1.16781 1.18203 0.91816 0.86341 0.93048 1.20791 0.99990 0.90899 1.12377 1.20866 0.93740 0.96985 0.95724 1.19495 0.93761 0.94173 1.08110 1.21054 0.98583 0.93639 0.88573 1.63579 1.44436 1.01777 1.16662 1.23042 0.92929 0.95668 0.96805 1.22714 1.02118 0.92412 0.97597 1.22527 1.01010 0.93191 0.97999 0.85016 1.20591 0.80811 0.86930 0.80420 1.43718 1.25225 1.28005 1.42918 1.90734 1.43353 1.43320 1.69715 1.22688 0.93991 0.90184 1.00245 1.20832 0.99386 0.91065 0.96997 1.20782 0.92932 0.98770 1.11259 0.92004 0.92611 0.91020 0.94746 0.95169 0.92317 0.85309 0.84722 0.89459 0.92946 0.92065 0.92269 0.87019 0.91530 0.75079 0.76170 0.91225 0.91165 0.85527 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.32 10.19 127.77 1.30 4.62 16 2 N -0.63 -26.63 2.99 -726.56 -2.17 -28.80 16 3 C 0.23 11.01 3.98 85.63 0.34 11.35 16 4 C -0.54 -30.80 9.94 25.60 0.25 -30.55 16 5 H 0.02 1.54 8.06 -2.91 -0.02 1.51 16 6 C 0.01 0.71 5.47 84.65 0.46 1.17 16 7 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 8 Si 0.95 42.57 27.47 68.60 1.88 44.45 16 9 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 12 C 0.21 8.41 6.55 38.21 0.25 8.66 16 13 C -0.22 -7.35 9.21 22.40 0.21 -7.14 16 14 C -0.05 -1.60 9.69 22.25 0.22 -1.38 16 15 C -0.15 -4.35 5.09 -19.84 -0.10 -4.45 16 16 C 0.11 2.39 4.72 85.56 0.40 2.79 16 17 N -0.54 -12.45 5.15 -889.95 -4.58 -17.03 16 18 C 0.04 0.91 5.62 86.77 0.49 1.40 16 19 C -0.11 -1.65 6.46 31.98 0.21 -1.44 16 20 C -0.13 -1.81 3.34 -10.36 -0.03 -1.84 16 21 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 22 C 0.53 9.15 7.42 87.65 0.65 9.80 16 23 N -0.84 -7.28 8.82 -173.52 -1.53 -8.81 16 24 O -0.59 -16.18 16.30 -3.05 -0.05 -16.23 16 25 C 0.06 1.14 6.26 86.65 0.54 1.68 16 26 C -0.06 -2.03 8.92 22.25 0.20 -1.84 16 27 C -0.21 -8.51 9.21 22.40 0.21 -8.31 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 30 H 0.07 2.20 6.20 -2.39 -0.01 2.19 16 31 H 0.03 1.57 7.13 -2.39 -0.02 1.56 16 32 H 0.03 1.41 5.62 -2.38 -0.01 1.40 16 33 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.13 3.85 6.14 -2.91 -0.02 3.83 16 35 H 0.13 3.32 8.06 -2.91 -0.02 3.29 16 36 H 0.09 1.73 7.97 -2.38 -0.02 1.71 16 37 H 0.05 1.00 7.79 -2.39 -0.02 0.98 16 38 H 0.06 1.16 7.00 -2.39 -0.02 1.14 16 39 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.20 8.04 -2.39 -0.02 1.18 16 42 H 0.42 1.00 8.82 -92.71 -0.82 0.18 16 43 H 0.41 3.02 8.93 -92.71 -0.83 2.19 16 44 H 0.07 1.78 6.88 -2.39 -0.02 1.77 16 45 H 0.07 1.21 7.55 -2.39 -0.02 1.19 16 46 H 0.13 3.43 7.50 -2.91 -0.02 3.41 16 47 H 0.10 4.47 6.14 -2.91 -0.02 4.45 16 Total: -1.00 -76.72 374.30 -1.27 -77.99 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.71 Total: 22.32 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 5.59 Total: -15.47 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -7.99 Total: -113.05 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.05 Total: -16.23 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.45 kcal Total: -76.72 -1.27 -77.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157175224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.950 kcal (2) G-P(sol) polarization free energy of solvation -76.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds