Wall clock time and date at job start Tue Mar 31 2020 11:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37100 * 119.99890 * 2 1 4 4 H 1.07999 * 120.00196 * 201.70534 * 3 2 1 5 5 C 1.38954 * 119.99725 * 21.70479 * 3 2 1 6 6 N 1.31415 * 119.99900 * 11.34606 * 5 3 2 7 7 Si 1.86799 * 119.99882 * 191.34000 * 5 3 2 8 8 H 1.48506 * 109.47087 * 85.07626 * 7 5 3 9 9 H 1.48503 * 109.47305 * 205.07276 * 7 5 3 10 10 H 1.48493 * 109.47214 * 325.07624 * 7 5 3 11 11 C 1.34770 * 120.00552 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00702 * 179.97438 * 11 2 1 13 13 C 1.50709 * 119.99706 * 0.02562 * 11 2 1 14 14 C 1.53000 * 109.46987 * 179.97438 * 13 11 2 15 15 N 1.46900 * 109.47123 * 179.97438 * 14 13 11 16 16 C 1.46956 * 111.00281 * 169.99793 * 15 14 13 17 17 C 1.53050 * 109.36431 * 183.18836 * 16 15 14 18 18 N 1.46957 * 109.36353 * 301.59578 * 17 16 15 19 19 C 1.39680 * 110.99855 * 183.19021 * 18 17 16 20 20 C 1.38912 * 120.07365 * 180.02562 * 19 18 17 21 21 C 1.38104 * 119.92405 * 180.02562 * 20 19 18 22 22 C 1.38289 * 120.07025 * 359.97438 * 21 20 19 23 23 C 1.38279 * 120.15175 * 359.97438 * 22 21 20 24 24 C 1.38102 * 120.07983 * 0.02562 * 23 22 21 25 25 C 1.46954 * 110.87565 * 59.32517 * 18 17 16 26 26 C 1.46959 * 110.99618 * 293.79912 * 15 14 13 27 27 H 1.09006 * 109.46802 * 272.17327 * 1 2 3 28 28 H 1.08995 * 109.47371 * 32.17574 * 1 2 3 29 29 H 1.08997 * 109.47004 * 152.17953 * 1 2 3 30 30 H 0.97007 * 119.99472 * 179.97438 * 6 5 3 31 31 H 1.08999 * 109.47018 * 59.99857 * 13 11 2 32 32 H 1.09004 * 109.46622 * 299.99474 * 13 11 2 33 33 H 1.09002 * 109.47098 * 59.99644 * 14 13 11 34 34 H 1.08997 * 109.47267 * 299.99691 * 14 13 11 35 35 H 1.09003 * 109.48401 * 63.21883 * 16 15 14 36 36 H 1.09002 * 109.48906 * 303.15977 * 16 15 14 37 37 H 1.09001 * 109.48549 * 181.63234 * 17 16 15 38 38 H 1.08997 * 109.49143 * 61.57135 * 17 16 15 39 39 H 1.07997 * 120.03402 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.96151 * 179.97438 * 21 20 19 41 41 H 1.08007 * 119.91766 * 179.71719 * 22 21 20 42 42 H 1.08007 * 119.95817 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.03996 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.49469 * 60.64785 * 25 18 17 45 45 H 1.09010 * 109.48605 * 180.70889 * 25 18 17 46 46 H 1.08994 * 109.48733 * 296.77452 * 26 15 14 47 47 H 1.09001 * 109.49177 * 56.84556 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1730 1.2205 -0.3459 5 6 1.5295 2.3480 0.4451 6 7 0.3755 2.2777 1.0698 7 14 2.3351 4.0082 0.1554 8 1 1.9734 4.5048 -1.1966 9 1 1.8623 4.9735 1.1800 10 1 3.8101 3.8663 0.2523 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 6 2.3798 -3.6351 -0.0027 15 7 1.6454 -4.9074 -0.0032 16 6 2.5521 -6.0389 -0.2425 17 6 1.7395 -7.3338 -0.3147 18 7 0.9973 -7.5139 0.9408 19 6 0.2989 -8.7236 0.9404 20 6 -0.4692 -9.0844 2.0401 21 6 -1.1580 -10.2814 2.0366 22 6 -1.0840 -11.1202 0.9396 23 6 -0.3211 -10.7635 -0.1572 24 6 0.3702 -9.5680 -0.1603 25 6 0.0905 -6.3825 1.1800 26 6 0.9030 -5.0874 1.2522 27 1 -0.3633 0.0390 1.0270 28 1 -0.3634 0.8698 -0.5472 29 1 -0.3633 -0.9089 -0.4796 30 1 -0.0578 3.0880 1.3808 31 1 0.7591 -2.5294 -0.8919 32 1 0.7585 -2.5306 0.8881 33 1 3.0065 -3.5781 0.8873 34 1 3.0064 -3.5766 -0.8926 35 1 3.2723 -6.1063 0.5729 36 1 3.0809 -5.8884 -1.1837 37 1 2.4130 -8.1779 -0.4632 38 1 1.0381 -7.2772 -1.1470 39 1 -0.5270 -8.4299 2.8973 40 1 -1.7550 -10.5627 2.8915 41 1 -1.6200 -12.0578 0.9413 42 1 -0.2652 -11.4212 -1.0122 43 1 0.9655 -9.2899 -1.0175 44 1 -0.6298 -6.3149 0.3647 45 1 -0.4383 -6.5329 2.1213 46 1 1.6045 -5.1441 2.0845 47 1 0.2295 -4.2433 1.4008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172725238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:39 Heat of formation + Delta-G solvation = 21.766643 kcal Electronic energy + Delta-G solvation = -26125.982564 eV Core-core repulsion = 22502.299468 eV Total energy + Delta-G solvation = -3623.683096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56482 -38.79380 -38.08970 -35.70012 -34.61312 -31.92263 -31.72041 -31.14697 -30.62862 -29.17954 -26.59775 -25.91306 -24.48314 -24.24459 -22.52308 -21.90384 -21.44419 -19.86027 -18.60752 -17.94051 -16.87001 -16.35197 -15.93242 -15.71888 -15.31806 -15.18596 -14.86091 -14.68000 -14.39723 -14.24646 -14.02967 -13.74655 -13.69037 -13.67153 -12.95210 -12.66892 -12.39010 -12.12530 -11.77509 -11.68168 -11.55656 -11.45180 -11.38643 -11.26030 -11.15444 -10.98431 -10.88488 -10.79602 -10.39611 -10.33988 -10.18688 -9.90544 -9.16979 -9.00820 -8.38056 -8.27343 -8.03683 -7.67273 -6.29193 -3.85412 1.16003 1.17791 3.17655 3.25501 3.30761 3.37883 3.69819 3.83565 3.93388 4.18089 4.55702 4.67767 4.73400 4.86005 4.89876 4.98417 5.02050 5.14579 5.16345 5.18940 5.25955 5.31333 5.33242 5.48139 5.54379 5.59787 5.61881 5.73900 5.78483 5.82263 5.88625 5.93739 6.05253 6.15706 6.18599 6.29693 6.33031 6.38272 6.50514 6.54364 6.77193 6.91677 7.05042 7.10940 7.16683 7.25448 7.58243 8.15165 8.50914 9.21154 9.45969 10.01455 10.74245 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.035695 B = 0.002178 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.231736 B =12854.360088 C =13332.622329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.448 5.448 3 C -0.304 4.304 4 H 0.098 0.902 5 C 0.028 3.972 6 N -0.885 5.885 7 Si 0.927 3.073 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.446 3.554 12 O -0.595 6.595 13 C -0.124 4.124 14 C 0.078 3.922 15 N -0.542 5.542 16 C 0.056 3.944 17 C 0.055 3.945 18 N -0.492 5.492 19 C 0.117 3.883 20 C -0.142 4.142 21 C -0.096 4.096 22 C -0.152 4.152 23 C -0.094 4.094 24 C -0.173 4.173 25 C 0.063 3.937 26 C 0.050 3.950 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.027 0.973 30 H 0.267 0.733 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.053 0.947 45 H 0.084 0.916 46 H 0.044 0.956 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 -23.191 -0.713 23.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.167 5.167 3 C -0.433 4.433 4 H 0.116 0.884 5 C -0.175 4.175 6 N -0.525 5.525 7 Si 0.754 3.246 8 H -0.203 1.203 9 H -0.210 1.210 10 H -0.195 1.195 11 C 0.234 3.766 12 O -0.481 6.481 13 C -0.164 4.164 14 C -0.050 4.050 15 N -0.268 5.268 16 C -0.073 4.073 17 C -0.072 4.072 18 N -0.208 5.208 19 C 0.019 3.981 20 C -0.163 4.163 21 C -0.114 4.114 22 C -0.171 4.171 23 C -0.113 4.113 24 C -0.193 4.193 25 C -0.062 4.062 26 C -0.078 4.078 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.098 -22.914 -0.627 23.482 hybrid contribution 0.208 0.885 0.105 0.915 sum -4.890 -22.029 -0.522 22.571 Atomic orbital electron populations 1.21504 0.81081 0.98846 1.01614 1.43611 1.05587 1.04839 1.62657 1.19664 0.99068 0.83805 1.40713 0.88407 1.25343 0.96529 1.00050 0.95549 1.70009 1.16842 1.29102 1.36528 0.85927 0.79585 0.81159 0.77932 1.20339 1.20986 1.19460 1.20023 0.87997 0.84897 0.83705 1.90504 1.14106 1.87318 1.56169 1.21473 0.98763 0.93155 1.03032 1.21761 0.94680 0.86322 1.02194 1.62187 1.28003 1.02494 1.34073 1.22153 0.94058 0.89329 1.01727 1.22363 0.97243 0.97990 0.89608 1.59238 1.25807 1.01195 1.34513 1.19018 0.93322 0.91962 0.93760 1.20817 0.99609 0.98066 0.97780 1.21012 0.98438 0.93828 0.98167 1.21054 1.01359 1.00251 0.94472 1.21001 0.96131 0.96024 0.98148 1.21338 1.03542 0.96745 0.97718 1.22327 0.93576 0.88470 1.01854 1.22264 0.97676 0.96740 0.91159 0.92552 0.91271 0.95438 0.92313 0.89850 0.90588 0.93975 0.90115 0.93835 0.89718 0.89776 0.92627 0.85804 0.86024 0.86371 0.86203 0.85552 0.92822 0.89743 0.93755 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.54 8.52 59.85 0.51 3.05 16 2 N -0.45 -11.60 3.02 -122.19 -0.37 -11.97 16 3 C -0.30 -8.59 9.31 -14.93 -0.14 -8.73 16 4 H 0.10 2.89 7.39 -52.49 -0.39 2.50 16 5 C 0.03 0.75 5.12 -17.46 -0.09 0.66 16 6 N -0.88 -23.72 10.56 55.50 0.59 -23.13 16 7 Si 0.93 20.97 29.57 -169.99 -5.03 15.94 16 8 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 C 0.45 10.85 7.63 -10.98 -0.08 10.77 16 12 O -0.60 -16.49 15.67 5.55 0.09 -16.40 16 13 C -0.12 -2.24 4.15 -27.88 -0.12 -2.36 16 14 C 0.08 1.28 4.25 -3.82 -0.02 1.27 16 15 N -0.54 -7.32 4.71 -234.46 -1.10 -8.42 16 16 C 0.06 0.65 5.61 -3.77 -0.02 0.63 16 17 C 0.06 0.56 4.29 -3.77 -0.02 0.55 16 18 N -0.49 -5.41 4.76 -170.95 -0.81 -6.23 16 19 C 0.12 1.24 5.64 -83.78 -0.47 0.76 16 20 C -0.14 -1.38 9.19 -39.38 -0.36 -1.74 16 21 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 22 C -0.15 -1.24 10.04 -39.55 -0.40 -1.64 16 23 C -0.09 -0.80 10.04 -39.62 -0.40 -1.20 16 24 C -0.17 -1.65 8.82 -39.38 -0.35 -1.99 16 25 C 0.06 0.68 5.38 -3.77 -0.02 0.66 16 26 C 0.05 0.62 5.41 -3.76 -0.02 0.60 16 27 H 0.06 1.31 7.56 -51.93 -0.39 0.91 16 28 H 0.07 1.64 7.00 -51.93 -0.36 1.27 16 29 H 0.03 0.51 6.36 -51.93 -0.33 0.18 16 30 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.08 1.42 7.41 -51.93 -0.38 1.03 16 32 H 0.08 1.29 6.46 -51.93 -0.34 0.95 16 33 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.08 1.39 7.98 -51.93 -0.41 0.98 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 37 H 0.08 0.75 7.17 -51.93 -0.37 0.38 16 38 H 0.06 0.57 7.58 -51.93 -0.39 0.18 16 39 H 0.12 1.09 7.18 -52.49 -0.38 0.72 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 43 H 0.13 1.06 5.81 -52.49 -0.31 0.76 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.80 6.82 -51.92 -0.35 0.45 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.09 1.10 6.34 -51.93 -0.33 0.77 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -31.47 367.16 -10.74 -42.21 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.25 Total: 2.39 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.39 Total: 0.08 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -1.70 Total: -49.75 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.09 Total: -16.40 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.47 -10.74 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172725238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.978 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds