Wall clock time and date at job start Tue Mar 31 2020 11:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37100 * 119.99890 * 2 1 4 4 H 1.07999 * 120.00196 * 201.70534 * 3 2 1 5 5 C 1.38954 * 119.99725 * 21.70479 * 3 2 1 6 6 N 1.31415 * 119.99900 * 11.34606 * 5 3 2 7 7 Si 1.86799 * 119.99882 * 191.34000 * 5 3 2 8 8 H 1.48506 * 109.47087 * 85.07626 * 7 5 3 9 9 H 1.48503 * 109.47305 * 205.07276 * 7 5 3 10 10 H 1.48493 * 109.47214 * 325.07624 * 7 5 3 11 11 C 1.34770 * 120.00552 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00702 * 179.97438 * 11 2 1 13 13 C 1.50709 * 119.99706 * 0.02562 * 11 2 1 14 14 C 1.53000 * 109.46987 * 179.97438 * 13 11 2 15 15 N 1.46900 * 109.47123 * 179.97438 * 14 13 11 16 16 C 1.46956 * 111.00281 * 169.99793 * 15 14 13 17 17 C 1.53050 * 109.36431 * 183.18836 * 16 15 14 18 18 N 1.46957 * 109.36353 * 301.59578 * 17 16 15 19 19 C 1.39680 * 110.99855 * 183.19021 * 18 17 16 20 20 C 1.38912 * 120.07365 * 180.02562 * 19 18 17 21 21 C 1.38104 * 119.92405 * 180.02562 * 20 19 18 22 22 C 1.38289 * 120.07025 * 359.97438 * 21 20 19 23 23 C 1.38279 * 120.15175 * 359.97438 * 22 21 20 24 24 C 1.38102 * 120.07983 * 0.02562 * 23 22 21 25 25 C 1.46954 * 110.87565 * 59.32517 * 18 17 16 26 26 C 1.46959 * 110.99618 * 293.79912 * 15 14 13 27 27 H 1.09006 * 109.46802 * 272.17327 * 1 2 3 28 28 H 1.08995 * 109.47371 * 32.17574 * 1 2 3 29 29 H 1.08997 * 109.47004 * 152.17953 * 1 2 3 30 30 H 0.97007 * 119.99472 * 179.97438 * 6 5 3 31 31 H 1.08999 * 109.47018 * 59.99857 * 13 11 2 32 32 H 1.09004 * 109.46622 * 299.99474 * 13 11 2 33 33 H 1.09002 * 109.47098 * 59.99644 * 14 13 11 34 34 H 1.08997 * 109.47267 * 299.99691 * 14 13 11 35 35 H 1.09003 * 109.48401 * 63.21883 * 16 15 14 36 36 H 1.09002 * 109.48906 * 303.15977 * 16 15 14 37 37 H 1.09001 * 109.48549 * 181.63234 * 17 16 15 38 38 H 1.08997 * 109.49143 * 61.57135 * 17 16 15 39 39 H 1.07997 * 120.03402 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.96151 * 179.97438 * 21 20 19 41 41 H 1.08007 * 119.91766 * 179.71719 * 22 21 20 42 42 H 1.08007 * 119.95817 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.03996 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.49469 * 60.64785 * 25 18 17 45 45 H 1.09010 * 109.48605 * 180.70889 * 25 18 17 46 46 H 1.08994 * 109.48733 * 296.77452 * 26 15 14 47 47 H 1.09001 * 109.49177 * 56.84556 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1730 1.2205 -0.3459 5 6 1.5295 2.3480 0.4451 6 7 0.3755 2.2777 1.0698 7 14 2.3351 4.0082 0.1554 8 1 1.9734 4.5048 -1.1966 9 1 1.8623 4.9735 1.1800 10 1 3.8101 3.8663 0.2523 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 6 2.3798 -3.6351 -0.0027 15 7 1.6454 -4.9074 -0.0032 16 6 2.5521 -6.0389 -0.2425 17 6 1.7395 -7.3338 -0.3147 18 7 0.9973 -7.5139 0.9408 19 6 0.2989 -8.7236 0.9404 20 6 -0.4692 -9.0844 2.0401 21 6 -1.1580 -10.2814 2.0366 22 6 -1.0840 -11.1202 0.9396 23 6 -0.3211 -10.7635 -0.1572 24 6 0.3702 -9.5680 -0.1603 25 6 0.0905 -6.3825 1.1800 26 6 0.9030 -5.0874 1.2522 27 1 -0.3633 0.0390 1.0270 28 1 -0.3634 0.8698 -0.5472 29 1 -0.3633 -0.9089 -0.4796 30 1 -0.0578 3.0880 1.3808 31 1 0.7591 -2.5294 -0.8919 32 1 0.7585 -2.5306 0.8881 33 1 3.0065 -3.5781 0.8873 34 1 3.0064 -3.5766 -0.8926 35 1 3.2723 -6.1063 0.5729 36 1 3.0809 -5.8884 -1.1837 37 1 2.4130 -8.1779 -0.4632 38 1 1.0381 -7.2772 -1.1470 39 1 -0.5270 -8.4299 2.8973 40 1 -1.7550 -10.5627 2.8915 41 1 -1.6200 -12.0578 0.9413 42 1 -0.2652 -11.4212 -1.0122 43 1 0.9655 -9.2899 -1.0175 44 1 -0.6298 -6.3149 0.3647 45 1 -0.4383 -6.5329 2.1213 46 1 1.6045 -5.1441 2.0845 47 1 0.2295 -4.2433 1.4008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172725238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:38 Heat of formation + Delta-G solvation = 1.939010 kcal Electronic energy + Delta-G solvation = -26126.842355 eV Core-core repulsion = 22502.299468 eV Total energy + Delta-G solvation = -3624.542887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37420 -40.44412 -39.18781 -36.89348 -36.39675 -33.72795 -32.70470 -32.39685 -31.38688 -30.18723 -28.26649 -27.26511 -26.13248 -25.20876 -23.71030 -22.67347 -22.39162 -20.76565 -20.40303 -18.91099 -18.68936 -17.93093 -16.92794 -16.81541 -16.49791 -16.40516 -16.07617 -15.97385 -15.75249 -15.48934 -15.26900 -14.86450 -14.65233 -14.45917 -14.25919 -14.03900 -13.54247 -13.44112 -13.26691 -13.12462 -13.00442 -12.84370 -12.62499 -12.48960 -12.43740 -12.21467 -12.17285 -12.10423 -11.95185 -11.80154 -11.55547 -11.01619 -10.65435 -10.35721 -9.81812 -9.70514 -9.41780 -8.77365 -8.32829 -5.98115 0.49099 0.52684 1.37170 1.40091 1.51962 2.03203 2.26271 2.62355 2.70839 3.00033 3.09460 3.25546 3.74808 3.85850 3.95324 4.07557 4.09571 4.12036 4.21038 4.24616 4.33768 4.35054 4.41732 4.46527 4.55672 4.60962 4.63240 4.72466 4.77503 4.78430 4.86187 4.91049 4.95172 5.01461 5.05183 5.09840 5.16306 5.34128 5.40538 5.44292 5.54976 5.69776 5.83969 5.94454 5.98787 6.07074 6.10976 6.38302 6.48267 7.16674 7.48303 8.03611 8.68426 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.035695 B = 0.002178 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.231736 B =12854.360088 C =13332.622329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.466 5.466 3 C -0.344 4.344 4 H 0.070 0.930 5 C -0.005 4.005 6 N -0.897 5.897 7 Si 0.990 3.010 8 H -0.265 1.265 9 H -0.272 1.272 10 H -0.277 1.277 11 C 0.436 3.564 12 O -0.638 6.638 13 C -0.107 4.107 14 C 0.090 3.910 15 N -0.538 5.538 16 C 0.054 3.946 17 C 0.062 3.938 18 N -0.502 5.502 19 C 0.098 3.902 20 C -0.155 4.155 21 C -0.101 4.101 22 C -0.155 4.155 23 C -0.101 4.101 24 C -0.183 4.183 25 C 0.070 3.930 26 C 0.049 3.951 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.273 0.727 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.020 0.980 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.126 0.874 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.034 0.966 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 -24.606 -0.983 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.184 5.184 3 C -0.472 4.472 4 H 0.088 0.912 5 C -0.207 4.207 6 N -0.536 5.536 7 Si 0.814 3.186 8 H -0.190 1.190 9 H -0.197 1.197 10 H -0.202 1.202 11 C 0.225 3.775 12 O -0.526 6.526 13 C -0.147 4.147 14 C -0.038 4.038 15 N -0.263 5.263 16 C -0.074 4.074 17 C -0.065 4.065 18 N -0.218 5.218 19 C 0.000 4.000 20 C -0.176 4.176 21 C -0.120 4.120 22 C -0.174 4.174 23 C -0.119 4.119 24 C -0.204 4.204 25 C -0.055 4.055 26 C -0.079 4.079 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.038 0.962 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.144 0.856 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.151 0.849 44 H 0.069 0.931 45 H 0.115 0.885 46 H 0.052 0.948 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.682 -24.354 -0.895 25.270 hybrid contribution 0.667 1.237 0.220 1.423 sum -6.014 -23.117 -0.675 23.896 Atomic orbital electron populations 1.21453 0.79162 1.00197 1.01164 1.43903 1.06919 1.04770 1.62824 1.19614 0.98775 0.85814 1.43014 0.91164 1.26098 0.97064 1.02841 0.94661 1.70080 1.17287 1.30263 1.35941 0.84998 0.78104 0.76973 0.78555 1.19044 1.19697 1.20239 1.21056 0.87908 0.86442 0.82045 1.90467 1.16285 1.88206 1.57668 1.21362 0.98616 0.90053 1.04676 1.21513 0.94076 0.87485 1.00720 1.62194 1.27761 1.01678 1.34665 1.22237 0.93980 0.89413 1.01748 1.22314 0.97242 0.97367 0.89554 1.59266 1.26168 1.01497 1.34856 1.19157 0.94255 0.91959 0.94611 1.20987 0.99969 0.98820 0.97784 1.21308 0.98231 0.93373 0.99045 1.21400 1.00974 1.00947 0.94087 1.21311 0.95657 0.95925 0.99020 1.21519 1.03945 0.97150 0.97762 1.22249 0.93174 0.87661 1.02417 1.22311 0.97473 0.97922 0.90191 0.93562 0.92920 0.91220 0.91721 0.87773 0.88886 0.96152 0.91126 0.94809 0.88903 0.88423 0.92461 0.85565 0.84079 0.84202 0.84207 0.84862 0.93081 0.88532 0.94802 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.44 8.52 127.77 1.09 6.53 16 2 N -0.47 -24.42 3.02 -658.90 -1.99 -26.41 16 3 C -0.34 -19.92 9.31 84.04 0.78 -19.14 16 4 H 0.07 4.35 7.39 -2.91 -0.02 4.33 16 5 C -0.01 -0.28 5.12 84.93 0.43 0.16 16 6 N -0.90 -47.83 10.56 21.66 0.23 -47.60 16 7 Si 0.99 43.03 29.57 68.60 2.03 45.06 16 8 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 C 0.44 21.54 7.63 87.66 0.67 22.20 16 12 O -0.64 -36.61 15.67 -3.06 -0.05 -36.66 16 13 C -0.11 -3.79 4.15 29.85 0.12 -3.66 16 14 C 0.09 2.97 4.25 86.30 0.37 3.34 16 15 N -0.54 -14.05 4.71 -895.71 -4.22 -18.27 16 16 C 0.05 1.23 5.61 86.31 0.48 1.72 16 17 C 0.06 1.19 4.29 86.31 0.37 1.56 16 18 N -0.50 -10.46 4.76 -694.77 -3.30 -13.77 16 19 C 0.10 1.92 5.64 38.21 0.22 2.14 16 20 C -0.16 -2.79 9.19 22.40 0.21 -2.58 16 21 C -0.10 -1.50 10.04 22.25 0.22 -1.28 16 22 C -0.16 -2.14 10.04 22.29 0.22 -1.92 16 23 C -0.10 -1.47 10.04 22.25 0.22 -1.25 16 24 C -0.18 -3.18 8.82 22.40 0.20 -2.98 16 25 C 0.07 1.43 5.38 86.31 0.46 1.89 16 26 C 0.05 1.17 5.41 86.31 0.47 1.64 16 27 H 0.05 2.11 7.56 -2.38 -0.02 2.10 16 28 H 0.05 2.47 7.00 -2.39 -0.02 2.45 16 29 H 0.07 2.43 6.36 -2.39 -0.02 2.42 16 30 H 0.27 13.63 8.31 -92.70 -0.77 12.86 16 31 H 0.10 3.30 7.41 -2.39 -0.02 3.28 16 32 H 0.09 3.01 6.46 -2.38 -0.02 3.00 16 33 H 0.02 0.75 8.08 -2.39 -0.02 0.73 16 34 H 0.07 2.46 7.98 -2.39 -0.02 2.44 16 35 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 1.94 8.07 -2.39 -0.02 1.92 16 37 H 0.10 1.60 7.17 -2.39 -0.02 1.59 16 38 H 0.06 1.09 7.58 -2.39 -0.02 1.07 16 39 H 0.13 2.09 7.18 -2.91 -0.02 2.07 16 40 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 42 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 43 H 0.13 2.01 5.81 -2.91 -0.02 2.00 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.10 1.70 6.82 -2.38 -0.02 1.69 16 46 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.09 2.12 6.34 -2.39 -0.02 2.11 16 Total: -1.00 -69.07 367.16 0.19 -68.88 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.96 Total: 20.40 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 6.54 Total: 8.37 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -9.28 Total: -106.05 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.05 Total: -36.66 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -69.07 0.19 -68.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172725238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.816 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds