Wall clock time and date at job start Tue Mar 31 2020 11:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00168 * 2 1 4 4 C 1.50702 * 109.47090 * 270.00445 * 3 2 1 5 5 H 1.07996 * 120.00183 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99807 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99764 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00068 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47179 * 59.99655 * 8 6 4 10 10 H 1.48495 * 109.47576 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47012 * 299.99801 * 8 6 4 12 12 C 1.34779 * 119.99972 * 180.02562 * 2 1 3 13 13 O 1.21591 * 120.00264 * 179.97438 * 12 2 1 14 14 N 1.34785 * 119.99666 * 359.97438 * 12 2 1 15 15 C 1.40203 * 119.99563 * 184.43625 * 14 12 2 16 16 C 1.38650 * 120.09620 * 325.34251 * 15 14 12 17 17 C 1.38251 * 120.00760 * 180.02562 * 16 15 14 18 18 C 1.38275 * 120.19164 * 359.97438 * 17 16 15 19 19 C 1.38234 * 120.19312 * 359.97438 * 18 17 16 20 20 C 1.38712 * 119.99193 * 0.02562 * 19 18 17 21 21 N 1.39923 * 120.09406 * 180.02562 * 20 19 18 22 22 C 1.46842 * 111.00146 * 64.21240 * 21 20 19 23 23 C 1.53040 * 109.52372 * 174.16061 * 22 21 20 24 24 C 1.53114 * 109.27937 * 59.17618 * 23 22 21 25 25 C 1.53123 * 109.16034 * 302.34855 * 24 23 22 26 26 C 1.46846 * 110.99870 * 299.99976 * 21 20 19 27 27 H 1.09001 * 109.46820 * 269.99838 * 1 2 3 28 28 H 1.08994 * 109.47205 * 29.99691 * 1 2 3 29 29 H 1.09006 * 109.47618 * 150.00035 * 1 2 3 30 30 H 1.08998 * 109.46838 * 30.00230 * 3 2 1 31 31 H 1.09002 * 109.47353 * 149.99947 * 3 2 1 32 32 H 0.97002 * 119.99295 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00462 * 4.43257 * 14 12 2 34 34 H 1.07998 * 119.99967 * 0.02562 * 16 15 14 35 35 H 1.07996 * 119.90318 * 180.27864 * 17 16 15 36 36 H 1.08003 * 119.90209 * 180.02562 * 18 17 16 37 37 H 1.08002 * 119.99994 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46166 * 294.17193 * 22 21 20 39 39 H 1.08998 * 109.46367 * 54.13925 * 22 21 20 40 40 H 1.09003 * 109.50132 * 299.23348 * 23 22 21 41 41 H 1.09002 * 109.53595 * 179.14091 * 23 22 21 42 42 H 1.08998 * 109.52276 * 182.44338 * 24 23 22 43 43 H 1.09001 * 109.57580 * 62.28320 * 24 23 22 44 44 H 1.08997 * 109.50143 * 297.70934 * 25 24 23 45 45 H 1.09008 * 109.53421 * 177.61802 * 25 24 23 46 46 H 1.09007 * 109.46336 * 305.85203 * 26 21 20 47 47 H 1.08997 * 109.46710 * 65.83781 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6730 8 14 3.4388 3.4164 -3.4338 9 1 2.1414 3.5943 -4.1342 10 1 4.1812 4.7025 -3.4339 11 1 4.2411 2.3811 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1673 -0.0010 14 7 1.4649 -2.3345 -0.0005 15 6 2.1628 -3.5468 0.0929 16 6 3.4076 -3.6802 -0.5030 17 6 4.0940 -4.8767 -0.4103 18 6 3.5430 -5.9430 0.2763 19 6 2.3030 -5.8186 0.8744 20 6 1.6075 -4.6217 0.7862 21 7 0.3524 -4.4933 1.3913 22 6 0.4565 -4.6174 2.8507 23 6 -0.9049 -4.3281 3.4871 24 6 -1.9377 -5.3196 2.9442 25 6 -1.9916 -5.2040 1.4183 26 6 -0.5988 -5.4680 0.8420 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5138 32 1 4.0311 4.4434 -0.8503 33 1 0.4971 -2.3357 -0.0651 34 1 3.8411 -2.8493 -1.0398 35 1 5.0654 -4.9773 -0.8712 36 1 4.0835 -6.8755 0.3463 37 1 1.8757 -6.6534 1.4103 38 1 0.7698 -5.6293 3.1077 39 1 1.1911 -3.9041 3.2244 40 1 -1.2125 -3.3115 3.2420 41 1 -0.8315 -4.4351 4.5694 42 1 -2.9179 -5.0898 3.3618 43 1 -1.6517 -6.3339 3.2227 44 1 -2.3164 -4.2012 1.1406 45 1 -2.6945 -5.9368 1.0219 46 1 -0.6308 -5.3723 -0.2434 47 1 -0.2807 -6.4759 1.1085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176542241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:45 Heat of formation + Delta-G solvation = 10.419677 kcal Electronic energy + Delta-G solvation = -27265.668568 eV Core-core repulsion = 23641.493430 eV Total energy + Delta-G solvation = -3624.175138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.59697 -39.28244 -37.72855 -34.93773 -34.25460 -33.65081 -32.50240 -31.03664 -29.68276 -28.81199 -27.52902 -25.70958 -24.51853 -23.36584 -23.23621 -22.14803 -21.22316 -19.78920 -19.23140 -17.88326 -17.03456 -16.66514 -16.45179 -15.31589 -15.21940 -15.03904 -14.81694 -14.58185 -14.48862 -13.94374 -13.72502 -13.69862 -13.52203 -13.17747 -13.06794 -12.75166 -12.49159 -12.15644 -12.11353 -11.86288 -11.68466 -11.44400 -11.38955 -11.15981 -10.97605 -10.89308 -10.66900 -10.56850 -10.53222 -10.13069 -9.93953 -9.62143 -9.18041 -8.64557 -8.53305 -8.40195 -7.87951 -7.48498 -6.01037 -4.05751 1.41278 1.57689 3.30614 3.34169 3.38437 3.42668 3.67023 3.75779 4.12761 4.44400 4.58301 4.62066 4.67093 4.69997 4.99739 5.03533 5.17708 5.18845 5.28747 5.31969 5.32997 5.40629 5.51527 5.58046 5.63405 5.66427 5.71410 5.73926 5.79349 5.90942 5.93509 5.94725 6.12217 6.14770 6.18012 6.41253 6.45614 6.69438 6.85695 6.87072 6.88179 7.11704 7.40790 7.51853 7.57174 7.75879 7.97790 8.26656 8.66918 8.95148 9.31759 9.59744 11.06720 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.003566 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.602813 B = 7849.625904 C = 8916.782751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.612 5.612 3 C 0.260 3.740 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.697 3.303 13 O -0.573 6.573 14 N -0.683 5.683 15 C 0.208 3.792 16 C -0.119 4.119 17 C -0.102 4.102 18 C -0.141 4.141 19 C -0.132 4.132 20 C 0.044 3.956 21 N -0.496 5.496 22 C 0.064 3.936 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.117 4.117 26 C 0.059 3.941 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.407 0.593 34 H 0.149 0.851 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 -20.497 5.831 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.347 5.347 3 C 0.141 3.859 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.399 3.601 13 O -0.449 6.449 14 N -0.332 5.332 15 C 0.109 3.891 16 C -0.140 4.140 17 C -0.120 4.120 18 C -0.161 4.161 19 C -0.152 4.152 20 C -0.053 4.053 21 N -0.218 5.218 22 C -0.062 4.062 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.068 4.068 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.166 0.834 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.011 -19.672 5.802 22.822 hybrid contribution -0.032 -0.441 -0.787 0.903 sum -10.043 -20.113 5.015 23.033 Atomic orbital electron populations 1.21561 0.81653 1.02168 1.00406 1.47467 1.05712 1.06284 1.75219 1.19225 0.92359 0.76913 0.97391 1.21430 1.36498 1.06230 0.92396 0.92539 1.24924 0.95372 0.96388 0.97377 1.69928 1.38391 1.14375 1.30740 0.86562 0.78325 0.77790 0.84741 1.20304 1.21206 1.20198 1.15946 0.85518 0.80138 0.78465 1.90873 1.11412 1.85597 1.57051 1.42842 1.10367 1.03079 1.76897 1.17424 0.92626 0.84542 0.94484 1.21495 0.94504 0.98408 0.99606 1.21087 0.99631 0.92563 0.98768 1.20889 0.95857 0.98946 1.00359 1.21263 0.95838 0.97020 1.01099 1.18436 0.92339 0.93824 1.00713 1.59405 1.06456 1.51176 1.04757 1.22100 0.97918 1.00062 0.86164 1.21604 0.94296 1.00387 0.99235 1.21574 0.99240 0.99218 0.95787 1.21604 0.95833 1.02616 0.95446 1.22160 0.92015 0.93026 0.99567 0.93675 0.90469 0.93182 0.94846 0.93712 0.92686 0.75574 0.83358 0.85941 0.86545 0.86690 0.94696 0.90565 0.90843 0.91518 0.91835 0.92449 0.90891 0.91562 0.90698 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.24 59.85 0.61 2.02 16 2 N -0.61 -13.31 2.86 -188.74 -0.54 -13.85 16 3 C 0.26 6.89 5.16 -5.20 -0.03 6.87 16 4 C -0.53 -15.03 9.39 -34.44 -0.32 -15.36 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.70 15.27 8.13 -86.91 -0.71 14.56 16 13 O -0.57 -14.76 13.34 5.29 0.07 -14.69 16 14 N -0.68 -11.80 5.05 -14.07 -0.07 -11.87 16 15 C 0.21 3.41 6.33 -83.43 -0.53 2.88 16 16 C -0.12 -2.03 8.70 -39.42 -0.34 -2.37 16 17 C -0.10 -1.41 10.04 -39.56 -0.40 -1.80 16 18 C -0.14 -1.69 10.04 -39.57 -0.40 -2.09 16 19 C -0.13 -1.59 8.70 -39.41 -0.34 -1.93 16 20 C 0.04 0.59 4.70 -83.54 -0.39 0.20 16 21 N -0.50 -5.71 4.11 -170.96 -0.70 -6.41 16 22 C 0.06 0.68 5.17 -3.83 -0.02 0.66 16 23 C -0.12 -1.02 6.09 -26.65 -0.16 -1.18 16 24 C -0.12 -0.90 6.00 -26.61 -0.16 -1.06 16 25 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 26 C 0.06 0.56 5.12 -3.84 -0.02 0.54 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 29 H 0.05 0.68 6.30 -51.93 -0.33 0.35 16 30 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.04 1.34 7.42 -51.93 -0.39 0.95 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 33 H 0.41 6.05 6.21 -40.82 -0.25 5.80 16 34 H 0.15 2.96 6.19 -52.49 -0.33 2.63 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.12 1.17 7.14 -52.49 -0.37 0.80 16 38 H 0.03 0.35 7.56 -51.93 -0.39 -0.04 16 39 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 46 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 47 H 0.04 0.32 7.34 -51.93 -0.38 -0.06 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -32.59 374.61 -10.82 -43.41 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.47 Total: 4.29 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -3.47 Total: 2.50 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.58 Total: -58.12 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.07 Total: -14.69 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.59 -10.82 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176542241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.826 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds