Wall clock time and date at job start Tue Mar 31 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00168 * 2 1 4 4 C 1.50702 * 109.47090 * 270.00445 * 3 2 1 5 5 H 1.07996 * 120.00183 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99807 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99764 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00068 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47179 * 59.99655 * 8 6 4 10 10 H 1.48495 * 109.47576 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47012 * 299.99801 * 8 6 4 12 12 C 1.34779 * 119.99972 * 180.02562 * 2 1 3 13 13 O 1.21591 * 120.00264 * 179.97438 * 12 2 1 14 14 N 1.34785 * 119.99666 * 359.97438 * 12 2 1 15 15 C 1.40203 * 119.99563 * 184.43625 * 14 12 2 16 16 C 1.38650 * 120.09620 * 325.34251 * 15 14 12 17 17 C 1.38251 * 120.00760 * 180.02562 * 16 15 14 18 18 C 1.38275 * 120.19164 * 359.97438 * 17 16 15 19 19 C 1.38234 * 120.19312 * 359.97438 * 18 17 16 20 20 C 1.38712 * 119.99193 * 0.02562 * 19 18 17 21 21 N 1.39923 * 120.09406 * 180.02562 * 20 19 18 22 22 C 1.46842 * 111.00146 * 64.21240 * 21 20 19 23 23 C 1.53040 * 109.52372 * 174.16061 * 22 21 20 24 24 C 1.53114 * 109.27937 * 59.17618 * 23 22 21 25 25 C 1.53123 * 109.16034 * 302.34855 * 24 23 22 26 26 C 1.46846 * 110.99870 * 299.99976 * 21 20 19 27 27 H 1.09001 * 109.46820 * 269.99838 * 1 2 3 28 28 H 1.08994 * 109.47205 * 29.99691 * 1 2 3 29 29 H 1.09006 * 109.47618 * 150.00035 * 1 2 3 30 30 H 1.08998 * 109.46838 * 30.00230 * 3 2 1 31 31 H 1.09002 * 109.47353 * 149.99947 * 3 2 1 32 32 H 0.97002 * 119.99295 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00462 * 4.43257 * 14 12 2 34 34 H 1.07998 * 119.99967 * 0.02562 * 16 15 14 35 35 H 1.07996 * 119.90318 * 180.27864 * 17 16 15 36 36 H 1.08003 * 119.90209 * 180.02562 * 18 17 16 37 37 H 1.08002 * 119.99994 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46166 * 294.17193 * 22 21 20 39 39 H 1.08998 * 109.46367 * 54.13925 * 22 21 20 40 40 H 1.09003 * 109.50132 * 299.23348 * 23 22 21 41 41 H 1.09002 * 109.53595 * 179.14091 * 23 22 21 42 42 H 1.08998 * 109.52276 * 182.44338 * 24 23 22 43 43 H 1.09001 * 109.57580 * 62.28320 * 24 23 22 44 44 H 1.08997 * 109.50143 * 297.70934 * 25 24 23 45 45 H 1.09008 * 109.53421 * 177.61802 * 25 24 23 46 46 H 1.09007 * 109.46336 * 305.85203 * 26 21 20 47 47 H 1.08997 * 109.46710 * 65.83781 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6730 8 14 3.4388 3.4164 -3.4338 9 1 2.1414 3.5943 -4.1342 10 1 4.1812 4.7025 -3.4339 11 1 4.2411 2.3811 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1673 -0.0010 14 7 1.4649 -2.3345 -0.0005 15 6 2.1628 -3.5468 0.0929 16 6 3.4076 -3.6802 -0.5030 17 6 4.0940 -4.8767 -0.4103 18 6 3.5430 -5.9430 0.2763 19 6 2.3030 -5.8186 0.8744 20 6 1.6075 -4.6217 0.7862 21 7 0.3524 -4.4933 1.3913 22 6 0.4565 -4.6174 2.8507 23 6 -0.9049 -4.3281 3.4871 24 6 -1.9377 -5.3196 2.9442 25 6 -1.9916 -5.2040 1.4183 26 6 -0.5988 -5.4680 0.8420 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5138 32 1 4.0311 4.4434 -0.8503 33 1 0.4971 -2.3357 -0.0651 34 1 3.8411 -2.8493 -1.0398 35 1 5.0654 -4.9773 -0.8712 36 1 4.0835 -6.8755 0.3463 37 1 1.8757 -6.6534 1.4103 38 1 0.7698 -5.6293 3.1077 39 1 1.1911 -3.9041 3.2244 40 1 -1.2125 -3.3115 3.2420 41 1 -0.8315 -4.4351 4.5694 42 1 -2.9179 -5.0898 3.3618 43 1 -1.6517 -6.3339 3.2227 44 1 -2.3164 -4.2012 1.1406 45 1 -2.6945 -5.9368 1.0219 46 1 -0.6308 -5.3723 -0.2434 47 1 -0.2807 -6.4759 1.1085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176542241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:44 Heat of formation + Delta-G solvation = -9.057679 kcal Electronic energy + Delta-G solvation = -27266.513170 eV Core-core repulsion = 23641.493430 eV Total energy + Delta-G solvation = -3625.019739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84342 -40.59717 -38.75948 -36.69274 -35.74853 -34.62591 -34.50091 -31.74718 -30.93207 -30.07463 -29.22265 -27.33921 -25.37996 -25.18047 -23.95109 -23.47566 -22.33057 -20.90830 -20.42576 -19.28455 -18.67350 -18.32357 -17.82000 -16.83846 -16.64567 -16.21133 -15.95030 -15.88220 -15.53351 -15.21566 -14.93967 -14.75340 -14.56853 -14.37449 -14.30259 -13.98321 -13.90396 -13.51361 -13.42393 -13.19591 -13.05425 -12.88430 -12.71848 -12.51900 -12.47672 -12.16600 -12.12110 -11.75193 -11.59308 -11.39026 -11.34327 -11.22342 -10.88188 -10.63008 -9.71620 -9.53595 -9.43958 -8.90445 -8.20497 -6.35861 0.32238 0.43148 1.36913 1.41332 1.48606 1.78317 2.19943 2.40328 2.76738 2.88995 3.07018 3.12013 3.88220 3.99464 4.00898 4.07237 4.18894 4.26750 4.33690 4.35621 4.45556 4.52093 4.55669 4.63494 4.65796 4.70594 4.82317 4.84633 4.92341 4.93880 4.97304 5.03624 5.16062 5.19692 5.27295 5.30546 5.32644 5.41771 5.53625 5.55259 5.59190 5.68030 5.79746 5.94232 6.06924 6.07180 6.12698 6.47747 6.72359 7.08475 7.31182 7.66193 8.85662 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.003566 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.602813 B = 7849.625904 C = 8916.782751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.620 5.620 3 C 0.278 3.722 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.260 1.260 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.693 3.307 13 O -0.622 6.622 14 N -0.664 5.664 15 C 0.172 3.828 16 C -0.146 4.146 17 C -0.108 4.108 18 C -0.126 4.126 19 C -0.127 4.127 20 C 0.055 3.945 21 N -0.507 5.507 22 C 0.065 3.935 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.114 4.114 26 C 0.059 3.941 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.029 0.971 31 H -0.002 1.002 32 H 0.268 0.732 33 H 0.418 0.582 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.691 -23.261 5.759 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.354 5.354 3 C 0.156 3.844 4 C -0.582 4.582 5 H 0.069 0.931 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.185 1.185 10 H -0.202 1.202 11 H -0.205 1.205 12 C 0.395 3.605 13 O -0.503 6.503 14 N -0.314 5.314 15 C 0.076 3.924 16 C -0.168 4.168 17 C -0.126 4.126 18 C -0.145 4.145 19 C -0.147 4.147 20 C -0.042 4.042 21 N -0.229 5.229 22 C -0.061 4.061 23 C -0.152 4.152 24 C -0.154 4.154 25 C -0.152 4.152 26 C -0.067 4.067 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.017 0.983 32 H 0.076 0.924 33 H 0.258 0.742 34 H 0.125 0.875 35 H 0.156 0.844 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.024 -22.488 5.736 26.138 hybrid contribution 0.572 0.294 -0.690 0.944 sum -11.452 -22.194 5.046 25.479 Atomic orbital electron populations 1.21814 0.78139 1.03540 1.02387 1.47336 1.07819 1.04872 1.75410 1.18681 0.90821 0.78868 0.96028 1.21681 1.36991 1.06549 0.93026 0.93062 1.25835 0.94831 0.96349 1.01961 1.70047 1.38838 1.14802 1.33039 0.85474 0.78831 0.77325 0.79196 1.18454 1.20198 1.20508 1.16126 0.85065 0.81173 0.78183 1.90836 1.13765 1.86498 1.59154 1.42466 1.10606 1.02096 1.76187 1.17685 0.93126 0.84889 0.96744 1.21321 0.95660 0.98728 1.01070 1.21282 1.00177 0.91962 0.99194 1.21285 0.95701 0.99371 0.98124 1.21621 0.95613 0.97058 1.00424 1.18516 0.93111 0.93172 0.99389 1.59381 1.05781 1.52542 1.05229 1.22099 0.98534 0.99964 0.85540 1.21586 0.93562 1.00205 0.99840 1.21555 0.99267 0.99159 0.95371 1.21600 0.95046 1.02774 0.95736 1.22231 0.92267 0.92899 0.99303 0.91304 0.90653 0.90234 0.95323 0.98346 0.92359 0.74247 0.87491 0.84428 0.82893 0.83700 0.93477 0.93106 0.92065 0.90410 0.90715 0.91536 0.91648 0.89765 0.91212 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.68 10.24 127.77 1.31 3.99 16 2 N -0.62 -28.07 2.86 -869.30 -2.48 -30.56 16 3 C 0.28 15.51 5.16 85.63 0.44 15.95 16 4 C -0.54 -32.17 9.39 25.60 0.24 -31.93 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.55 5.46 84.65 0.46 1.01 16 7 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 8 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 9 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 12 C 0.69 32.01 8.13 179.05 1.46 33.46 16 13 O -0.62 -34.62 13.34 -4.00 -0.05 -34.68 16 14 N -0.66 -23.66 5.05 -316.67 -1.60 -25.26 16 15 C 0.17 5.80 6.33 38.19 0.24 6.04 16 16 C -0.15 -5.27 8.70 22.37 0.19 -5.07 16 17 C -0.11 -2.94 10.04 22.28 0.22 -2.72 16 18 C -0.13 -2.67 10.04 22.28 0.22 -2.44 16 19 C -0.13 -2.69 8.70 22.38 0.19 -2.49 16 20 C 0.05 1.41 4.70 38.25 0.18 1.59 16 21 N -0.51 -10.77 4.11 -694.81 -2.86 -13.62 16 22 C 0.06 1.26 5.17 86.33 0.45 1.71 16 23 C -0.11 -1.74 6.09 30.65 0.19 -1.55 16 24 C -0.12 -1.35 6.00 30.67 0.18 -1.16 16 25 C -0.11 -1.43 6.09 30.65 0.19 -1.24 16 26 C 0.06 0.95 5.12 86.33 0.44 1.39 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 2.45 8.07 -2.39 -0.02 2.44 16 29 H 0.08 2.06 6.30 -2.38 -0.02 2.04 16 30 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 31 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 32 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 33 H 0.42 12.39 6.21 -92.71 -0.58 11.81 16 34 H 0.11 4.72 6.19 -2.91 -0.02 4.70 16 35 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.15 2.26 7.14 -2.91 -0.02 2.23 16 38 H 0.05 0.80 7.56 -2.39 -0.02 0.78 16 39 H 0.05 1.24 8.11 -2.39 -0.02 1.22 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.07 1.20 8.11 -2.38 -0.02 1.18 16 47 H 0.05 0.66 7.34 -2.39 -0.02 0.64 16 Total: -1.00 -75.59 374.61 2.31 -73.27 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.38 Total: 23.22 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 6.61 Total: 16.52 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -6.65 Total: -126.10 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -0.05 Total: -34.68 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -75.59 2.31 -73.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176542241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.215 kcal (2) G-P(sol) polarization free energy of solvation -75.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds