Wall clock time and date at job start Tue Mar 31 2020 11:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99642 * 2 1 4 4 C 1.50704 * 109.47340 * 269.99642 * 3 2 1 5 5 H 1.08000 * 119.99820 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00217 * 180.02562 * 4 3 2 7 7 N 1.31507 * 119.99889 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99862 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46950 * 89.99903 * 8 6 4 10 10 H 1.48496 * 109.46878 * 209.99756 * 8 6 4 11 11 H 1.48498 * 109.47249 * 330.00055 * 8 6 4 12 12 C 1.39674 * 119.99880 * 179.97438 * 2 1 3 13 13 C 1.38906 * 120.07549 * 0.02562 * 12 2 1 14 14 C 1.38108 * 119.92451 * 179.97438 * 13 12 2 15 15 C 1.38279 * 120.07183 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.92314 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46724 * 90.00279 * 16 15 14 18 18 C 1.47437 * 111.00223 * 69.15656 * 17 16 15 19 19 C 1.54320 * 107.23257 * 123.25511 * 18 17 16 20 20 C 1.55138 * 103.02210 * 22.28526 * 19 18 17 21 21 C 1.47846 * 110.99547 * 190.00058 * 17 16 15 22 22 H 1.08995 * 110.38030 * 332.46412 * 21 17 16 23 23 C 1.50700 * 110.37461 * 94.80826 * 21 17 16 24 24 N 1.34777 * 120.00236 * 179.97438 * 23 21 17 25 25 O 1.21291 * 119.99957 * 359.97438 * 23 21 17 26 26 C 1.38284 * 120.15384 * 0.27599 * 15 14 13 27 27 C 1.38104 * 120.07142 * 359.44711 * 26 15 14 28 28 H 1.08996 * 109.46938 * 270.00262 * 1 2 3 29 29 H 1.09001 * 109.46974 * 30.00531 * 1 2 3 30 30 H 1.09004 * 109.46840 * 150.00035 * 1 2 3 31 31 H 1.08998 * 109.47512 * 30.00169 * 3 2 1 32 32 H 1.09002 * 109.46924 * 150.00021 * 3 2 1 33 33 H 0.96997 * 120.00132 * 180.02562 * 7 6 4 34 34 H 1.08001 * 120.03735 * 359.95625 * 13 12 2 35 35 H 1.07999 * 119.96384 * 179.97438 * 14 13 12 36 36 H 1.08997 * 109.46821 * 330.00599 * 16 15 14 37 37 H 1.08999 * 109.47180 * 210.00116 * 16 15 14 38 38 H 1.08998 * 109.89349 * 242.66131 * 18 17 16 39 39 H 1.08998 * 109.88725 * 3.69037 * 18 17 16 40 40 H 1.09000 * 110.70582 * 140.66816 * 19 18 17 41 41 H 1.09005 * 110.70961 * 263.90379 * 19 18 17 42 42 H 1.08995 * 110.99472 * 206.25386 * 20 19 18 43 43 H 1.09001 * 110.98913 * 82.43214 * 20 19 18 44 44 H 0.97002 * 119.99789 * 359.97438 * 24 23 21 45 45 H 0.97002 * 120.00008 * 179.97438 * 24 23 21 46 46 H 1.07997 * 119.96523 * 179.70933 * 26 15 14 47 47 H 1.07999 * 120.03771 * 180.27954 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5541 3.6177 -0.6732 8 14 3.4376 3.4171 -3.4340 9 1 2.3077 4.2606 -3.8999 10 1 4.6982 4.1994 -3.4968 11 1 3.5539 2.2201 -4.3052 12 6 2.1634 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1641 -3.6077 0.0005 15 6 3.5469 -3.6058 0.0011 16 6 4.3004 -4.9110 0.0017 17 7 4.5458 -5.3352 -1.3832 18 6 5.5173 -4.4448 -2.0444 19 6 6.6814 -5.3273 -2.5420 20 6 6.0367 -6.7352 -2.6374 21 6 5.0674 -6.7179 -1.4291 22 1 5.6033 -6.9522 -0.5094 23 6 3.9418 -7.6963 -1.6455 24 7 4.2015 -9.0168 -1.7192 25 8 2.8021 -7.2954 -1.7533 26 6 4.2399 -2.4092 0.0074 27 6 3.5525 -1.2114 0.0016 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 4.0309 4.4436 -0.8504 34 1 0.3904 -2.4156 0.0008 35 1 1.6260 -4.5441 0.0010 36 1 3.7111 -5.6705 0.5153 37 1 5.2526 -4.7805 0.5158 38 1 5.0453 -3.9428 -2.8889 39 1 5.8867 -3.7059 -1.3333 40 1 7.0263 -4.9942 -3.5208 41 1 7.5004 -5.3265 -1.8227 42 1 6.7876 -7.5170 -2.5244 43 1 5.4912 -6.8521 -3.5738 44 1 5.1130 -9.3373 -1.6333 45 1 3.4769 -9.6465 -1.8581 46 1 5.3198 -2.4113 0.0125 47 1 4.0943 -0.2772 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179582370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:54 Heat of formation + Delta-G solvation = 3.598992 kcal Electronic energy + Delta-G solvation = -26543.451445 eV Core-core repulsion = 22918.980540 eV Total energy + Delta-G solvation = -3624.470905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.25653 -38.91396 -37.83741 -35.67777 -33.83738 -32.85617 -32.19137 -30.39120 -29.62006 -28.98170 -27.72780 -25.85932 -24.20724 -23.05285 -22.29264 -21.43977 -20.97665 -19.95913 -19.45008 -17.60770 -17.13921 -16.54995 -16.37399 -16.00680 -15.32603 -14.94213 -14.78219 -14.63536 -14.29442 -13.74311 -13.65165 -13.41303 -13.33327 -13.10857 -12.81185 -12.76703 -12.46171 -12.11565 -11.94252 -11.69955 -11.39522 -11.35480 -11.29117 -11.19624 -10.93470 -10.82450 -10.63247 -10.58463 -10.20472 -9.90045 -9.82689 -9.81389 -9.69073 -8.76306 -8.47932 -8.23622 -8.15729 -6.40132 -5.97295 -4.14200 2.20749 2.31041 2.58109 3.22042 3.28168 3.34714 3.40260 4.05114 4.21953 4.34124 4.44346 4.46325 4.65807 4.80214 4.88505 5.02629 5.24122 5.24369 5.30234 5.38365 5.47807 5.52565 5.66296 5.73476 5.74906 5.81401 5.87304 5.93864 6.09656 6.15032 6.17589 6.36367 6.47073 6.52299 6.59464 6.75679 6.85423 7.01306 7.07771 7.13930 7.23911 7.28864 7.34897 7.43594 7.69722 7.84570 8.19680 8.21156 8.33352 8.56179 8.95565 9.52527 10.98455 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015964 B = 0.003150 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.484698 B = 8886.072679 C = 9885.080468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.617 5.617 3 C 0.249 3.751 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.242 3.758 13 C -0.222 4.222 14 C -0.046 4.046 15 C -0.166 4.166 16 C 0.111 3.889 17 N -0.500 5.500 18 C 0.043 3.957 19 C -0.141 4.141 20 C -0.117 4.117 21 C 0.050 3.950 22 H 0.078 0.922 23 C 0.521 3.479 24 N -0.863 5.863 25 O -0.512 6.512 26 C -0.067 4.067 27 C -0.189 4.189 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.397 0.603 45 H 0.399 0.601 46 H 0.106 0.894 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.164 -23.043 0.354 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.323 5.323 3 C 0.130 3.870 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.135 3.865 13 C -0.245 4.245 14 C -0.065 4.065 15 C -0.169 4.169 16 C -0.016 4.016 17 N -0.224 5.224 18 C -0.084 4.084 19 C -0.180 4.180 20 C -0.155 4.155 21 C -0.062 4.062 22 H 0.095 0.905 23 C 0.305 3.695 24 N -0.429 5.429 25 O -0.385 6.385 26 C -0.087 4.087 27 C -0.211 4.211 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.225 0.775 45 H 0.230 0.770 46 H 0.124 0.876 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.960 -22.128 0.107 22.677 hybrid contribution 1.073 0.000 -0.630 1.244 sum 6.033 -22.128 -0.522 22.942 Atomic orbital electron populations 1.21466 0.81550 1.01917 0.99623 1.47077 1.04348 1.04598 1.76232 1.19267 0.92055 0.78812 0.96913 1.21605 1.36155 1.06346 0.92732 0.92239 1.24958 0.95459 0.96309 0.97359 1.69929 1.38521 1.14349 1.30737 0.86532 0.77659 0.78707 0.84814 1.20642 1.21119 1.19749 1.17941 0.91478 0.85945 0.91154 1.20573 0.99021 0.91394 1.13551 1.20519 0.93263 0.96605 0.96116 1.19037 0.93615 0.92922 1.11281 1.20975 0.97678 0.95349 0.87605 1.63205 1.43182 0.98774 1.17257 1.22900 0.90644 0.95103 0.99770 1.22820 0.98187 0.94698 1.02289 1.22664 0.97180 0.98065 0.97610 1.22482 0.92950 0.91224 0.99589 0.90466 1.20514 0.90458 0.82734 0.75840 1.43897 1.12926 1.07865 1.78164 1.90775 1.22464 1.78207 1.47037 1.20634 0.98160 0.91723 0.98139 1.20806 0.92688 0.98546 1.09108 0.94682 0.91532 0.92641 0.95274 0.94663 0.92699 0.86965 0.87178 0.91061 0.94708 0.90076 0.91575 0.90304 0.91250 0.90368 0.90179 0.77520 0.77001 0.87575 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.82 10.19 59.85 0.61 2.43 16 2 N -0.62 -13.72 2.99 -181.00 -0.54 -14.26 16 3 C 0.25 6.39 4.91 -5.19 -0.03 6.37 16 4 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.24 5.13 6.55 -83.79 -0.55 4.58 16 13 C -0.22 -4.22 9.21 -39.38 -0.36 -4.58 16 14 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 15 C -0.17 -2.77 5.09 -104.59 -0.53 -3.30 16 16 C 0.11 1.52 4.75 -4.97 -0.02 1.50 16 17 N -0.50 -6.66 4.33 -226.18 -0.98 -7.64 16 18 C 0.04 0.53 6.26 -2.84 -0.02 0.51 16 19 C -0.14 -1.22 6.94 -24.91 -0.17 -1.39 16 20 C -0.12 -0.90 6.47 -24.59 -0.16 -1.06 16 21 C 0.05 0.49 2.80 -67.33 -0.19 0.30 16 22 H 0.08 0.62 7.81 -51.93 -0.41 0.22 16 23 C 0.52 5.81 7.46 -10.99 -0.08 5.73 16 24 N -0.86 -5.45 8.85 31.22 0.28 -5.17 16 25 O -0.51 -8.43 17.32 5.55 0.10 -8.34 16 26 C -0.07 -1.18 8.70 -39.61 -0.34 -1.53 16 27 C -0.19 -3.94 9.21 -39.38 -0.36 -4.30 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.24 8.07 -51.93 -0.42 0.83 16 30 H 0.05 0.93 6.20 -51.93 -0.32 0.61 16 31 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.04 0.95 6.19 -51.93 -0.32 0.63 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.11 1.95 6.14 -52.49 -0.32 1.63 16 35 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.07 0.97 8.02 -51.93 -0.42 0.56 16 37 H 0.03 0.42 7.92 -51.93 -0.41 0.01 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 0.83 5.46 -51.93 -0.28 0.54 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 44 H 0.40 1.20 8.83 -40.82 -0.36 0.84 16 45 H 0.40 2.23 8.93 -40.82 -0.36 1.86 16 46 H 0.11 1.63 6.92 -52.49 -0.36 1.27 16 47 H 0.13 2.96 6.14 -52.49 -0.32 2.63 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -33.58 378.37 -9.98 -43.56 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.23 Total: 4.15 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -3.02 Total: -9.37 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.51 Total: -52.27 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.10 Total: -8.34 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.58 -9.98 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179582370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.157 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds