Wall clock time and date at job start Tue Mar 31 2020 11:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99642 * 2 1 4 4 C 1.50704 * 109.47340 * 269.99642 * 3 2 1 5 5 H 1.08000 * 119.99820 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00217 * 180.02562 * 4 3 2 7 7 N 1.31507 * 119.99889 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99862 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46950 * 89.99903 * 8 6 4 10 10 H 1.48496 * 109.46878 * 209.99756 * 8 6 4 11 11 H 1.48498 * 109.47249 * 330.00055 * 8 6 4 12 12 C 1.39674 * 119.99880 * 179.97438 * 2 1 3 13 13 C 1.38906 * 120.07549 * 0.02562 * 12 2 1 14 14 C 1.38108 * 119.92451 * 179.97438 * 13 12 2 15 15 C 1.38279 * 120.07183 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.92314 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46724 * 90.00279 * 16 15 14 18 18 C 1.47437 * 111.00223 * 69.15656 * 17 16 15 19 19 C 1.54320 * 107.23257 * 123.25511 * 18 17 16 20 20 C 1.55138 * 103.02210 * 22.28526 * 19 18 17 21 21 C 1.47846 * 110.99547 * 190.00058 * 17 16 15 22 22 H 1.08995 * 110.38030 * 332.46412 * 21 17 16 23 23 C 1.50700 * 110.37461 * 94.80826 * 21 17 16 24 24 N 1.34777 * 120.00236 * 179.97438 * 23 21 17 25 25 O 1.21291 * 119.99957 * 359.97438 * 23 21 17 26 26 C 1.38284 * 120.15384 * 0.27599 * 15 14 13 27 27 C 1.38104 * 120.07142 * 359.44711 * 26 15 14 28 28 H 1.08996 * 109.46938 * 270.00262 * 1 2 3 29 29 H 1.09001 * 109.46974 * 30.00531 * 1 2 3 30 30 H 1.09004 * 109.46840 * 150.00035 * 1 2 3 31 31 H 1.08998 * 109.47512 * 30.00169 * 3 2 1 32 32 H 1.09002 * 109.46924 * 150.00021 * 3 2 1 33 33 H 0.96997 * 120.00132 * 180.02562 * 7 6 4 34 34 H 1.08001 * 120.03735 * 359.95625 * 13 12 2 35 35 H 1.07999 * 119.96384 * 179.97438 * 14 13 12 36 36 H 1.08997 * 109.46821 * 330.00599 * 16 15 14 37 37 H 1.08999 * 109.47180 * 210.00116 * 16 15 14 38 38 H 1.08998 * 109.89349 * 242.66131 * 18 17 16 39 39 H 1.08998 * 109.88725 * 3.69037 * 18 17 16 40 40 H 1.09000 * 110.70582 * 140.66816 * 19 18 17 41 41 H 1.09005 * 110.70961 * 263.90379 * 19 18 17 42 42 H 1.08995 * 110.99472 * 206.25386 * 20 19 18 43 43 H 1.09001 * 110.98913 * 82.43214 * 20 19 18 44 44 H 0.97002 * 119.99789 * 359.97438 * 24 23 21 45 45 H 0.97002 * 120.00008 * 179.97438 * 24 23 21 46 46 H 1.07997 * 119.96523 * 179.70933 * 26 15 14 47 47 H 1.07999 * 120.03771 * 180.27954 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5541 3.6177 -0.6732 8 14 3.4376 3.4171 -3.4340 9 1 2.3077 4.2606 -3.8999 10 1 4.6982 4.1994 -3.4968 11 1 3.5539 2.2201 -4.3052 12 6 2.1634 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1641 -3.6077 0.0005 15 6 3.5469 -3.6058 0.0011 16 6 4.3004 -4.9110 0.0017 17 7 4.5458 -5.3352 -1.3832 18 6 5.5173 -4.4448 -2.0444 19 6 6.6814 -5.3273 -2.5420 20 6 6.0367 -6.7352 -2.6374 21 6 5.0674 -6.7179 -1.4291 22 1 5.6033 -6.9522 -0.5094 23 6 3.9418 -7.6963 -1.6455 24 7 4.2015 -9.0168 -1.7192 25 8 2.8021 -7.2954 -1.7533 26 6 4.2399 -2.4092 0.0074 27 6 3.5525 -1.2114 0.0016 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 4.0309 4.4436 -0.8504 34 1 0.3904 -2.4156 0.0008 35 1 1.6260 -4.5441 0.0010 36 1 3.7111 -5.6705 0.5153 37 1 5.2526 -4.7805 0.5158 38 1 5.0453 -3.9428 -2.8889 39 1 5.8867 -3.7059 -1.3333 40 1 7.0263 -4.9942 -3.5208 41 1 7.5004 -5.3265 -1.8227 42 1 6.7876 -7.5170 -2.5244 43 1 5.4912 -6.8521 -3.5738 44 1 5.1130 -9.3373 -1.6333 45 1 3.4769 -9.6465 -1.8581 46 1 5.3198 -2.4113 0.0125 47 1 4.0943 -0.2772 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179582370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:53 Heat of formation + Delta-G solvation = -20.158745 kcal Electronic energy + Delta-G solvation = -26544.481657 eV Core-core repulsion = 22918.980540 eV Total energy + Delta-G solvation = -3625.501118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.16804 -40.31585 -38.83941 -37.22356 -34.87868 -34.56778 -33.35892 -31.92512 -30.65509 -30.12950 -29.52543 -27.25918 -25.82997 -24.27371 -23.44155 -23.01413 -21.91460 -20.96968 -20.73545 -18.63788 -18.30680 -18.11303 -17.84116 -16.91111 -16.85007 -16.27926 -16.06477 -15.81460 -15.51073 -15.33355 -15.05508 -14.72302 -14.37486 -14.21050 -14.18395 -14.08075 -13.80103 -13.58775 -13.18824 -13.11804 -12.94209 -12.76160 -12.68246 -12.54538 -12.32897 -12.20435 -12.02919 -11.84456 -11.73020 -11.62730 -11.36627 -10.80064 -10.64404 -10.52870 -10.40789 -9.66489 -9.16687 -8.36422 -7.80452 -6.37552 0.70242 0.83121 1.36318 1.37048 1.48810 1.77411 2.34103 2.48163 2.62859 3.03155 3.05814 3.39412 3.66744 3.75035 4.00452 4.06340 4.11710 4.23926 4.26132 4.30751 4.37314 4.45045 4.60776 4.61830 4.65766 4.69484 4.82772 4.86233 4.91704 4.96360 4.98411 5.03835 5.11900 5.12710 5.19761 5.32523 5.35048 5.57875 5.66077 5.69587 5.89379 5.97928 6.07348 6.09568 6.14119 6.21723 6.50016 6.64217 6.82500 6.92525 7.34242 7.52058 8.83148 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015964 B = 0.003150 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.484698 B = 8886.072679 C = 9885.080468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.632 5.632 3 C 0.267 3.733 4 C -0.542 4.542 5 H 0.046 0.954 6 C 0.014 3.986 7 N -0.926 5.926 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.274 1.274 12 C 0.214 3.786 13 C -0.220 4.220 14 C -0.051 4.051 15 C -0.153 4.153 16 C 0.116 3.884 17 N -0.528 5.528 18 C 0.039 3.961 19 C -0.133 4.133 20 C -0.108 4.108 21 C 0.049 3.951 22 H 0.106 0.894 23 C 0.518 3.482 24 N -0.838 5.838 25 O -0.576 6.576 26 C -0.062 4.062 27 C -0.213 4.213 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.010 0.990 32 H 0.013 0.987 33 H 0.268 0.732 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.066 0.934 44 H 0.417 0.583 45 H 0.405 0.595 46 H 0.129 0.871 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.790 -25.966 -0.308 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.340 5.340 3 C 0.146 3.854 4 C -0.581 4.581 5 H 0.064 0.936 6 C -0.185 4.185 7 N -0.565 5.565 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.201 1.201 11 H -0.199 1.199 12 C 0.109 3.891 13 C -0.243 4.243 14 C -0.070 4.070 15 C -0.156 4.156 16 C -0.011 4.011 17 N -0.252 5.252 18 C -0.089 4.089 19 C -0.172 4.172 20 C -0.146 4.146 21 C -0.063 4.063 22 H 0.124 0.876 23 C 0.302 3.698 24 N -0.403 5.403 25 O -0.454 6.454 26 C -0.081 4.081 27 C -0.236 4.236 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.138 0.862 43 H 0.084 0.916 44 H 0.248 0.752 45 H 0.237 0.763 46 H 0.146 0.854 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.623 -25.134 -0.550 25.998 hybrid contribution 0.611 0.739 -0.402 1.040 sum 7.235 -24.395 -0.952 25.463 Atomic orbital electron populations 1.21587 0.79583 1.02365 1.00941 1.46966 1.05559 1.03741 1.77774 1.18779 0.91108 0.80110 0.95429 1.21768 1.36465 1.06567 0.93293 0.93560 1.25756 0.95021 0.96240 1.01483 1.70029 1.38983 1.14767 1.32760 0.85515 0.78027 0.78208 0.79700 1.19637 1.20103 1.19853 1.18171 0.91778 0.86261 0.92850 1.20745 0.99865 0.90848 1.12793 1.20776 0.93958 0.96603 0.95697 1.19436 0.93613 0.94176 1.08372 1.20912 0.98228 0.93411 0.88518 1.62999 1.44711 1.00784 1.16727 1.22852 0.91712 0.95674 0.98630 1.22789 0.97168 0.94259 1.02955 1.22692 0.97245 0.98721 0.95921 1.22612 0.92924 0.88893 1.01831 0.87641 1.20832 0.89826 0.84110 0.74982 1.43674 1.14397 1.06411 1.75862 1.90753 1.24796 1.79460 1.50407 1.20820 0.99282 0.90914 0.97079 1.20762 0.92987 0.98591 1.11259 0.92848 0.92391 0.90810 0.97216 0.96891 0.92325 0.85464 0.85890 0.90796 0.92565 0.93127 0.92158 0.89804 0.89201 0.86243 0.91553 0.75174 0.76326 0.85357 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.69 10.19 127.77 1.30 4.99 16 2 N -0.63 -29.31 2.99 -726.55 -2.17 -31.49 16 3 C 0.27 14.49 4.91 85.64 0.42 14.91 16 4 C -0.54 -31.36 9.39 25.60 0.24 -31.12 16 5 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 6 C 0.01 0.82 5.46 84.66 0.46 1.28 16 7 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 8 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 12 C 0.21 9.39 6.55 38.21 0.25 9.64 16 13 C -0.22 -8.34 9.21 22.40 0.21 -8.13 16 14 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 15 C -0.15 -4.99 5.09 -19.84 -0.10 -5.10 16 16 C 0.12 2.95 4.75 85.56 0.41 3.35 16 17 N -0.53 -13.14 4.33 -869.51 -3.77 -16.91 16 18 C 0.04 0.90 6.26 86.65 0.54 1.44 16 19 C -0.13 -1.88 6.94 31.78 0.22 -1.66 16 20 C -0.11 -1.25 6.47 31.98 0.21 -1.04 16 21 C 0.05 0.81 2.80 44.64 0.13 0.94 16 22 H 0.11 1.19 7.81 -2.39 -0.02 1.17 16 23 C 0.52 10.40 7.46 87.66 0.65 11.05 16 24 N -0.84 -7.96 8.85 -173.52 -1.54 -9.50 16 25 O -0.58 -18.59 17.32 -3.06 -0.05 -18.64 16 26 C -0.06 -2.19 8.70 22.25 0.19 -2.00 16 27 C -0.21 -9.30 9.21 22.40 0.21 -9.10 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 30 H 0.07 2.45 6.20 -2.39 -0.01 2.44 16 31 H 0.01 0.56 8.07 -2.39 -0.02 0.54 16 32 H 0.01 0.76 6.19 -2.39 -0.01 0.74 16 33 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.13 4.34 6.14 -2.91 -0.02 4.32 16 35 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.07 1.85 8.02 -2.39 -0.02 1.83 16 37 H 0.06 1.19 7.92 -2.39 -0.02 1.17 16 38 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.43 5.46 -2.39 -0.01 1.42 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.07 0.98 8.05 -2.39 -0.02 0.96 16 44 H 0.42 0.73 8.83 -92.71 -0.82 -0.09 16 45 H 0.41 3.47 8.93 -92.71 -0.83 2.64 16 46 H 0.13 3.87 6.92 -2.91 -0.02 3.85 16 47 H 0.10 4.90 6.14 -2.91 -0.02 4.88 16 Total: -1.00 -76.74 378.37 -0.32 -77.06 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.65 Total: 19.29 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 5.55 Total: -12.10 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -7.19 Total: -112.57 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.05 Total: -18.64 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -76.74 -0.32 -77.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179582370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.897 kcal (2) G-P(sol) polarization free energy of solvation -76.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds