Wall clock time and date at job start Tue Mar 31 2020 11:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00056 * 2 1 4 4 C 1.50697 * 109.47482 * 269.99665 * 3 2 1 5 5 H 1.08008 * 119.99378 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00323 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99894 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00053 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47200 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47252 * 120.00122 * 8 6 4 11 11 H 1.48507 * 109.47035 * 240.00191 * 8 6 4 12 12 C 1.34771 * 119.99517 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99707 * 179.97438 * 12 2 1 14 14 C 1.50696 * 120.00511 * 0.02562 * 12 2 1 15 15 C 1.52998 * 109.47708 * 179.97438 * 14 12 2 16 16 N 1.46892 * 109.47750 * 179.97438 * 15 14 12 17 17 C 1.46895 * 111.00454 * 190.00360 * 16 15 14 18 18 C 1.50694 * 109.47263 * 75.87689 * 17 16 15 19 19 C 1.38670 * 120.42054 * 84.36696 * 18 17 16 20 20 C 1.38636 * 118.42113 * 179.97438 * 19 18 17 21 21 C 1.38223 * 119.16030 * 359.97438 * 20 19 18 22 22 N 1.31864 * 120.76489 * 0.02562 * 21 20 19 23 23 C 1.31885 * 121.72560 * 359.97438 * 22 21 20 24 24 C 1.46906 * 111.00068 * 66.04695 * 16 15 14 25 25 C 1.53001 * 117.49962 * 254.16743 * 24 16 15 26 26 C 1.52994 * 117.50063 * 185.54069 * 24 16 15 27 27 H 1.08995 * 109.47167 * 270.00238 * 1 2 3 28 28 H 1.09008 * 109.46974 * 30.00101 * 1 2 3 29 29 H 1.09000 * 109.46940 * 149.99404 * 1 2 3 30 30 H 1.08996 * 109.47150 * 30.00129 * 3 2 1 31 31 H 1.09000 * 109.46932 * 150.00039 * 3 2 1 32 32 H 0.97000 * 120.00094 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.47295 * 59.99530 * 14 12 2 34 34 H 1.09004 * 109.47160 * 299.99868 * 14 12 2 35 35 H 1.09007 * 109.46677 * 59.99702 * 15 14 12 36 36 H 1.09004 * 109.47152 * 300.00424 * 15 14 12 37 37 H 1.09004 * 109.47276 * 315.87203 * 17 16 15 38 38 H 1.09004 * 109.47587 * 195.87786 * 17 16 15 39 39 H 1.07995 * 120.79302 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.41885 * 179.97438 * 20 19 18 41 41 H 1.08001 * 119.61793 * 180.02562 * 21 20 19 42 42 H 1.07995 * 119.61906 * 179.97438 * 23 22 21 43 43 H 1.09006 * 115.54780 * 39.86691 * 24 16 15 44 44 H 1.08993 * 117.49795 * 359.97438 * 25 24 16 45 45 H 1.09001 * 117.50078 * 145.02003 * 25 24 16 46 46 H 1.09007 * 117.49526 * 214.97931 * 26 24 16 47 47 H 1.09000 * 117.50180 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7038 -1.4207 5 1 2.0975 1.0961 -2.2417 6 6 3.1262 2.8780 -1.6727 7 7 3.5534 3.6181 -0.6731 8 14 3.4370 3.4175 -3.4338 9 1 2.8591 2.4175 -4.3673 10 1 2.7990 4.7381 -3.6669 11 1 4.8995 3.5262 -3.6674 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0001 14 6 1.3853 -2.4723 0.0005 15 6 2.3794 -3.6353 0.0005 16 7 1.6450 -4.9074 0.0011 17 6 2.5514 -6.0386 0.2394 18 6 2.9223 -6.0862 1.6992 19 6 2.0935 -6.7180 2.6140 20 6 2.4753 -6.7376 3.9466 21 6 3.6614 -6.1316 4.3163 22 7 4.4250 -5.5399 3.4188 23 6 4.0933 -5.5019 2.1429 24 6 0.8991 -5.0853 -1.2519 25 6 -0.6189 -4.9004 -1.2028 26 6 -0.0234 -6.3012 -1.3584 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0283 0.5138 31 1 3.1500 1.1383 0.5138 32 1 4.0303 4.4439 -0.8503 33 1 0.7589 -2.5302 -0.8897 34 1 0.7583 -2.5298 0.8903 35 1 3.0061 -3.5775 0.8906 36 1 3.0062 -3.5776 -0.8895 37 1 3.4528 -5.9145 -0.3608 38 1 2.0543 -6.9676 -0.0397 39 1 1.1728 -7.1843 2.2959 40 1 1.8540 -7.2203 4.6864 41 1 3.9662 -6.1429 5.3524 42 1 4.7440 -5.0076 1.4368 43 1 1.4164 -4.7652 -2.1564 44 1 -1.0641 -4.6472 -0.2408 45 1 -1.1006 -4.4586 -2.0751 46 1 -0.1133 -6.7809 -2.3331 47 1 -0.0766 -6.9694 -0.4989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180747304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:06 Heat of formation + Delta-G solvation = 33.390421 kcal Electronic energy + Delta-G solvation = -26452.810911 eV Core-core repulsion = 22829.631860 eV Total energy + Delta-G solvation = -3623.179052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40519 -39.19186 -38.29871 -35.06648 -34.68830 -32.97074 -32.55470 -31.85647 -30.16551 -27.76768 -26.14930 -25.53519 -24.01590 -23.46920 -22.65209 -22.08274 -21.85541 -20.21090 -18.30489 -17.21281 -16.71430 -16.52815 -16.33580 -16.22346 -15.80176 -15.38497 -15.08256 -14.75688 -14.33555 -14.09424 -13.75929 -13.62253 -13.28565 -13.17501 -13.17122 -12.54752 -12.24189 -12.17710 -11.95040 -11.90395 -11.77710 -11.56973 -11.41186 -11.15141 -11.11541 -10.84138 -10.55661 -10.44790 -10.37075 -10.14409 -9.90216 -9.58775 -9.52126 -9.16377 -8.84862 -8.47954 -8.42375 -7.59828 -6.02614 -4.07305 0.95375 1.17365 3.30149 3.37090 3.39480 3.42043 3.50880 3.61121 3.83265 4.11866 4.33279 4.46294 4.60251 4.66046 4.74872 4.79878 4.80920 4.89574 5.01295 5.12879 5.16112 5.24753 5.31896 5.34549 5.44354 5.48039 5.53865 5.57258 5.64294 5.66252 5.79040 5.89094 5.95312 5.95563 6.00436 6.08425 6.12466 6.16804 6.24592 6.56672 6.86010 6.97596 7.09838 7.47911 7.58097 7.87989 7.94045 8.25890 8.46669 8.92696 9.14249 9.57755 11.05502 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014067 B = 0.003146 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.044821 B = 8899.404031 C = 9943.181593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.130 4.130 15 C 0.074 3.926 16 N -0.509 5.509 17 C 0.099 3.901 18 C -0.127 4.127 19 C -0.055 4.055 20 C -0.177 4.177 21 C 0.094 3.906 22 N -0.483 5.483 23 C 0.109 3.891 24 C 0.004 3.996 25 C -0.160 4.160 26 C -0.175 4.175 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 -23.467 4.184 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.171 4.171 15 C -0.054 4.054 16 N -0.233 5.233 17 C -0.029 4.029 18 C -0.129 4.129 19 C -0.082 4.082 20 C -0.197 4.197 21 C -0.063 4.063 22 N -0.191 5.191 23 C -0.049 4.049 24 C -0.105 4.105 25 C -0.198 4.198 26 C -0.213 4.213 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.170 0.830 42 H 0.171 0.829 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.893 -22.854 4.878 24.665 hybrid contribution -0.218 0.137 -1.842 1.860 sum -8.111 -22.717 3.036 24.311 Atomic orbital electron populations 1.21624 0.81503 1.02484 1.00351 1.48144 1.06147 1.07876 1.71365 1.19277 0.92570 0.78187 0.97448 1.21470 1.36362 1.06183 0.92332 0.92494 1.24945 0.95418 0.96423 0.97410 1.69943 1.38452 1.14333 1.30638 0.86448 0.78083 0.78282 0.84623 1.19855 1.20968 1.20862 1.20325 0.88085 0.85205 0.77396 1.90663 1.13987 1.87387 1.50339 1.21564 0.99135 0.92451 1.03915 1.21871 0.94585 0.86466 1.02452 1.61773 1.27359 1.01963 1.32180 1.20902 0.95920 0.94786 0.91248 1.20764 0.95947 0.99449 0.96751 1.21395 0.98228 0.95939 0.92610 1.22128 0.98596 1.02074 0.96901 1.22780 0.91060 0.93235 0.99211 1.67725 1.33115 1.15875 1.02390 1.22785 0.94571 0.95016 0.92479 1.22463 0.92061 1.03711 0.92222 1.23068 0.94677 0.98628 1.03439 1.23034 1.04033 0.91406 1.02803 0.93836 0.90904 0.92415 0.95094 0.93868 0.92782 0.89466 0.89260 0.89876 0.93530 0.93106 0.89586 0.85059 0.84980 0.82985 0.82921 0.89145 0.88090 0.88716 0.88812 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.24 59.85 0.61 1.98 16 2 N -0.60 -13.10 2.86 -182.96 -0.52 -13.62 16 3 C 0.24 6.56 5.16 -5.20 -0.03 6.53 16 4 C -0.52 -15.13 9.39 -34.44 -0.32 -15.46 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.50 10.64 7.67 -10.99 -0.08 10.55 16 13 O -0.55 -13.90 15.56 5.55 0.09 -13.81 16 14 C -0.13 -1.97 4.22 -27.89 -0.12 -2.08 16 15 C 0.07 1.05 4.07 -3.83 -0.02 1.03 16 16 N -0.51 -5.57 4.56 -228.09 -1.04 -6.61 16 17 C 0.10 0.95 5.11 -4.98 -0.03 0.93 16 18 C -0.13 -1.34 5.04 -104.48 -0.53 -1.86 16 19 C -0.06 -0.51 9.88 -39.28 -0.39 -0.89 16 20 C -0.18 -1.56 10.11 -39.44 -0.40 -1.96 16 21 C 0.09 0.99 11.18 -17.54 -0.20 0.79 16 22 N -0.48 -6.41 10.36 -13.25 -0.14 -6.54 16 23 C 0.11 1.35 9.60 -17.55 -0.17 1.18 16 24 C 0.00 0.04 4.18 -67.71 -0.28 -0.24 16 25 C -0.16 -1.36 10.02 -26.73 -0.27 -1.63 16 26 C -0.18 -1.32 9.55 -26.73 -0.26 -1.57 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.21 8.07 -51.92 -0.42 0.79 16 29 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.09 1.20 6.29 -51.92 -0.33 0.87 16 34 H 0.09 1.24 8.11 -51.93 -0.42 0.82 16 35 H 0.08 1.31 6.32 -51.92 -0.33 0.98 16 36 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.05 0.49 7.91 -51.93 -0.41 0.08 16 38 H 0.09 0.68 6.77 -51.93 -0.35 0.33 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.15 1.84 7.99 -52.49 -0.42 1.42 16 43 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.10 0.69 7.71 -51.93 -0.40 0.28 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -34.64 388.47 -10.16 -44.80 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.56 Total: 0.18 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -2.56 Total: -1.07 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.96 Total: -53.03 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.64 -10.16 -44.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180747304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.192 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds