Wall clock time and date at job start Tue Mar 31 2020 11:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00056 * 2 1 4 4 C 1.50697 * 109.47482 * 269.99665 * 3 2 1 5 5 H 1.08008 * 119.99378 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00323 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99894 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00053 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47200 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47252 * 120.00122 * 8 6 4 11 11 H 1.48507 * 109.47035 * 240.00191 * 8 6 4 12 12 C 1.34771 * 119.99517 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99707 * 179.97438 * 12 2 1 14 14 C 1.50696 * 120.00511 * 0.02562 * 12 2 1 15 15 C 1.52998 * 109.47708 * 179.97438 * 14 12 2 16 16 N 1.46892 * 109.47750 * 179.97438 * 15 14 12 17 17 C 1.46895 * 111.00454 * 190.00360 * 16 15 14 18 18 C 1.50694 * 109.47263 * 75.87689 * 17 16 15 19 19 C 1.38670 * 120.42054 * 84.36696 * 18 17 16 20 20 C 1.38636 * 118.42113 * 179.97438 * 19 18 17 21 21 C 1.38223 * 119.16030 * 359.97438 * 20 19 18 22 22 N 1.31864 * 120.76489 * 0.02562 * 21 20 19 23 23 C 1.31885 * 121.72560 * 359.97438 * 22 21 20 24 24 C 1.46906 * 111.00068 * 66.04695 * 16 15 14 25 25 C 1.53001 * 117.49962 * 254.16743 * 24 16 15 26 26 C 1.52994 * 117.50063 * 185.54069 * 24 16 15 27 27 H 1.08995 * 109.47167 * 270.00238 * 1 2 3 28 28 H 1.09008 * 109.46974 * 30.00101 * 1 2 3 29 29 H 1.09000 * 109.46940 * 149.99404 * 1 2 3 30 30 H 1.08996 * 109.47150 * 30.00129 * 3 2 1 31 31 H 1.09000 * 109.46932 * 150.00039 * 3 2 1 32 32 H 0.97000 * 120.00094 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.47295 * 59.99530 * 14 12 2 34 34 H 1.09004 * 109.47160 * 299.99868 * 14 12 2 35 35 H 1.09007 * 109.46677 * 59.99702 * 15 14 12 36 36 H 1.09004 * 109.47152 * 300.00424 * 15 14 12 37 37 H 1.09004 * 109.47276 * 315.87203 * 17 16 15 38 38 H 1.09004 * 109.47587 * 195.87786 * 17 16 15 39 39 H 1.07995 * 120.79302 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.41885 * 179.97438 * 20 19 18 41 41 H 1.08001 * 119.61793 * 180.02562 * 21 20 19 42 42 H 1.07995 * 119.61906 * 179.97438 * 23 22 21 43 43 H 1.09006 * 115.54780 * 39.86691 * 24 16 15 44 44 H 1.08993 * 117.49795 * 359.97438 * 25 24 16 45 45 H 1.09001 * 117.50078 * 145.02003 * 25 24 16 46 46 H 1.09007 * 117.49526 * 214.97931 * 26 24 16 47 47 H 1.09000 * 117.50180 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7038 -1.4207 5 1 2.0975 1.0961 -2.2417 6 6 3.1262 2.8780 -1.6727 7 7 3.5534 3.6181 -0.6731 8 14 3.4370 3.4175 -3.4338 9 1 2.8591 2.4175 -4.3673 10 1 2.7990 4.7381 -3.6669 11 1 4.8995 3.5262 -3.6674 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0001 14 6 1.3853 -2.4723 0.0005 15 6 2.3794 -3.6353 0.0005 16 7 1.6450 -4.9074 0.0011 17 6 2.5514 -6.0386 0.2394 18 6 2.9223 -6.0862 1.6992 19 6 2.0935 -6.7180 2.6140 20 6 2.4753 -6.7376 3.9466 21 6 3.6614 -6.1316 4.3163 22 7 4.4250 -5.5399 3.4188 23 6 4.0933 -5.5019 2.1429 24 6 0.8991 -5.0853 -1.2519 25 6 -0.6189 -4.9004 -1.2028 26 6 -0.0234 -6.3012 -1.3584 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0283 0.5138 31 1 3.1500 1.1383 0.5138 32 1 4.0303 4.4439 -0.8503 33 1 0.7589 -2.5302 -0.8897 34 1 0.7583 -2.5298 0.8903 35 1 3.0061 -3.5775 0.8906 36 1 3.0062 -3.5776 -0.8895 37 1 3.4528 -5.9145 -0.3608 38 1 2.0543 -6.9676 -0.0397 39 1 1.1728 -7.1843 2.2959 40 1 1.8540 -7.2203 4.6864 41 1 3.9662 -6.1429 5.3524 42 1 4.7440 -5.0076 1.4368 43 1 1.4164 -4.7652 -2.1564 44 1 -1.0641 -4.6472 -0.2408 45 1 -1.1006 -4.4586 -2.0751 46 1 -0.1133 -6.7809 -2.3331 47 1 -0.0766 -6.9694 -0.4989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180747304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:05 Heat of formation + Delta-G solvation = 10.570626 kcal Electronic energy + Delta-G solvation = -26453.800452 eV Core-core repulsion = 22829.631860 eV Total energy + Delta-G solvation = -3624.168592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24240 -40.68515 -39.28602 -36.64109 -35.72634 -34.77679 -33.83959 -32.73857 -31.31391 -29.61944 -27.41654 -26.82704 -25.37990 -24.50687 -23.58169 -23.28560 -22.59866 -21.07145 -19.93671 -18.72276 -18.01325 -17.91303 -17.40032 -17.14935 -17.01721 -16.77952 -16.36688 -16.06853 -15.90487 -15.15125 -14.70371 -14.63854 -14.42940 -14.17776 -14.04927 -13.90223 -13.86769 -13.61938 -13.46559 -13.19329 -12.93429 -12.82420 -12.72918 -12.55481 -12.28450 -12.23503 -12.20447 -12.14875 -11.69376 -11.23647 -11.06346 -10.68415 -10.66987 -10.60883 -10.33885 -9.96032 -9.43363 -9.36863 -8.24235 -6.39610 0.16809 0.41247 1.34528 1.37178 1.49031 1.83156 2.25920 2.39691 2.71855 2.95386 3.04945 3.08383 3.55511 3.77870 3.85220 3.91853 3.99313 4.03880 4.11130 4.14027 4.16063 4.22312 4.39513 4.42756 4.52227 4.57580 4.66683 4.71413 4.75664 4.85172 4.88676 4.91824 4.93295 4.96683 4.97849 5.02536 5.20148 5.21344 5.23271 5.36683 5.43087 5.54619 5.82229 5.82880 5.91498 6.04151 6.13732 6.67830 6.77982 7.06977 7.26284 7.47371 8.83185 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014067 B = 0.003146 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.044821 B = 8899.404031 C = 9943.181593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.267 1.267 11 H -0.282 1.282 12 C 0.492 3.508 13 O -0.602 6.602 14 C -0.108 4.108 15 C 0.084 3.916 16 N -0.498 5.498 17 C 0.101 3.899 18 C -0.129 4.129 19 C -0.054 4.054 20 C -0.167 4.167 21 C 0.077 3.923 22 N -0.522 5.522 23 C 0.082 3.918 24 C -0.021 4.021 25 C -0.158 4.158 26 C -0.154 4.154 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.023 0.977 31 H -0.006 1.006 32 H 0.267 0.733 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.060 0.940 36 H 0.023 0.977 37 H 0.041 0.959 38 H 0.112 0.888 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.173 0.827 42 H 0.136 0.864 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.310 -25.696 3.409 28.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.192 1.192 11 H -0.208 1.208 12 C 0.281 3.719 13 O -0.484 6.484 14 C -0.148 4.148 15 C -0.045 4.045 16 N -0.222 5.222 17 C -0.026 4.026 18 C -0.132 4.132 19 C -0.081 4.081 20 C -0.186 4.186 21 C -0.079 4.079 22 N -0.231 5.231 23 C -0.075 4.075 24 C -0.129 4.129 25 C -0.196 4.196 26 C -0.191 4.191 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.041 0.959 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.059 0.941 38 H 0.130 0.870 39 H 0.179 0.821 40 H 0.185 0.815 41 H 0.190 0.810 42 H 0.154 0.846 43 H 0.097 0.903 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.182 -25.104 4.102 27.787 hybrid contribution 0.777 0.788 -1.518 1.878 sum -10.405 -24.317 2.584 26.575 Atomic orbital electron populations 1.21931 0.77770 1.04056 1.02517 1.48196 1.08490 1.06365 1.71181 1.18744 0.90984 0.80502 0.96095 1.21726 1.36845 1.06533 0.92949 0.92817 1.25908 0.94874 0.96417 1.02173 1.70064 1.38931 1.14832 1.33085 0.85329 0.77868 0.78466 0.78901 1.18994 1.19243 1.20790 1.21426 0.87822 0.86814 0.75803 1.90633 1.16783 1.88297 1.52656 1.21445 0.98694 0.88748 1.05868 1.21616 0.94191 0.88261 1.00389 1.61763 1.26721 1.00646 1.33041 1.20967 0.95747 0.95245 0.90675 1.20834 0.95440 0.99343 0.97534 1.21767 0.98725 0.95134 0.92452 1.22502 0.97864 1.00680 0.97600 1.23248 0.91761 0.93210 0.99721 1.67643 1.34889 1.17475 1.03122 1.22713 0.95826 0.96548 0.92417 1.22508 0.92634 1.06710 0.91083 1.23139 0.93090 0.99476 1.03846 1.23121 1.01130 0.90841 1.03989 0.91303 0.91529 0.88650 0.95932 0.98766 0.92379 0.87146 0.86974 0.92122 0.95821 0.94054 0.86975 0.82141 0.81499 0.81031 0.84607 0.90294 0.87996 0.87977 0.87504 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.41 10.24 127.77 1.31 3.72 16 2 N -0.61 -26.91 2.86 -851.14 -2.43 -29.34 16 3 C 0.26 14.49 5.16 85.63 0.44 14.93 16 4 C -0.54 -32.10 9.39 25.60 0.24 -31.86 16 5 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.30 5.46 84.66 0.46 0.76 16 7 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 8 Si 0.97 45.71 29.54 68.60 2.03 47.73 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 C 0.49 21.31 7.67 87.66 0.67 21.98 16 13 O -0.60 -32.60 15.56 -3.04 -0.05 -32.64 16 14 C -0.11 -3.13 4.22 29.85 0.13 -3.01 16 15 C 0.08 2.42 4.07 86.30 0.35 2.77 16 16 N -0.50 -10.15 4.56 -875.53 -3.99 -14.14 16 17 C 0.10 1.83 5.11 85.56 0.44 2.27 16 18 C -0.13 -2.64 5.04 -19.77 -0.10 -2.74 16 19 C -0.05 -0.85 9.88 22.47 0.22 -0.63 16 20 C -0.17 -2.50 10.11 22.36 0.23 -2.28 16 21 C 0.08 1.57 11.18 84.68 0.95 2.52 16 22 N -0.52 -14.49 10.36 -195.84 -2.03 -16.52 16 23 C 0.08 2.16 9.60 84.67 0.81 2.97 16 24 C -0.02 -0.36 4.18 44.91 0.19 -0.17 16 25 C -0.16 -2.10 10.02 30.60 0.31 -1.80 16 26 C -0.15 -1.71 9.55 30.59 0.29 -1.41 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 2.12 8.07 -2.38 -0.02 2.10 16 29 H 0.10 2.18 6.44 -2.39 -0.02 2.16 16 30 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 31 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.11 2.74 6.29 -2.38 -0.01 2.72 16 34 H 0.11 2.81 8.11 -2.38 -0.02 2.80 16 35 H 0.06 2.03 6.32 -2.38 -0.02 2.02 16 36 H 0.02 0.78 8.05 -2.38 -0.02 0.76 16 37 H 0.04 0.83 7.91 -2.38 -0.02 0.81 16 38 H 0.11 1.44 6.77 -2.38 -0.02 1.43 16 39 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.14 3.79 7.99 -2.91 -0.02 3.77 16 43 H 0.08 1.55 8.09 -2.38 -0.02 1.53 16 44 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.11 1.00 7.71 -2.39 -0.02 0.98 16 Total: -1.00 -80.56 388.47 1.69 -78.87 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.94 Total: 15.28 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 6.93 Total: 8.03 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -8.17 Total: -117.27 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.05 Total: -32.64 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -80.56 1.69 -78.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180747304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.442 kcal (2) G-P(sol) polarization free energy of solvation -80.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds