Wall clock time and date at job start Tue Mar 31 2020 11:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50703 * 119.99786 * 2 1 4 4 N 1.46504 * 109.46785 * 124.99898 * 3 2 1 5 5 C 1.34776 * 119.99719 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99837 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99767 * 179.97438 * 5 4 3 8 8 N 1.46901 * 109.46943 * 180.02562 * 7 5 4 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47066 * 180.02562 * 9 8 7 11 11 C 1.38284 * 119.92731 * 269.72721 * 10 9 8 12 12 C 1.38107 * 120.07495 * 179.72775 * 11 10 9 13 13 C 1.38905 * 119.92196 * 0.54269 * 12 11 10 14 14 N 1.39682 * 120.07290 * 179.74950 * 13 12 11 15 15 C 1.46495 * 119.99815 * 179.97438 * 14 13 12 16 16 C 1.46503 * 119.99949 * 359.97438 * 14 13 12 17 17 C 1.50696 * 109.46934 * 89.99878 * 16 14 13 18 18 H 1.08001 * 120.00501 * 359.97438 * 17 16 14 19 19 C 1.37884 * 119.99736 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00063 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99923 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47239 * 89.99523 * 21 19 17 23 23 H 1.48499 * 109.46903 * 209.99799 * 21 19 17 24 24 H 1.48501 * 109.47015 * 329.99170 * 21 19 17 25 25 C 1.38908 * 119.85666 * 359.73022 * 13 12 11 26 26 C 1.38113 * 119.92265 * 359.97438 * 25 13 12 27 27 H 1.08001 * 119.99452 * 179.97438 * 1 2 3 28 28 H 1.07996 * 119.99925 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00182 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46739 * 5.00250 * 3 2 1 31 31 H 1.08995 * 109.47079 * 245.00091 * 3 2 1 32 32 H 0.96997 * 119.99567 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.46763 * 60.00720 * 7 5 4 34 34 H 1.08995 * 109.47483 * 300.00377 * 7 5 4 35 35 H 1.00901 * 111.00067 * 303.95401 * 8 7 5 36 36 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 37 37 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 38 38 H 1.08001 * 119.96155 * 359.97438 * 11 10 9 39 39 H 1.08001 * 120.03692 * 180.27771 * 12 11 10 40 40 H 1.09006 * 109.47190 * 90.00390 * 15 14 13 41 41 H 1.09005 * 109.47273 * 210.00039 * 15 14 13 42 42 H 1.08999 * 109.47518 * 330.00267 * 15 14 13 43 43 H 1.08992 * 109.47000 * 209.99766 * 16 14 13 44 44 H 1.08998 * 109.46696 * 330.00052 * 16 14 13 45 45 H 0.96998 * 120.00344 * 180.02562 * 20 19 17 46 46 H 1.07999 * 120.04104 * 179.97438 * 25 13 12 47 47 H 1.07994 * 119.96170 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1315 5 6 3.7790 2.4086 1.3329 6 8 3.7151 3.3555 0.5778 7 6 4.7354 2.4364 2.4972 8 7 5.4700 3.7086 2.4971 9 6 6.4145 3.7712 3.6206 10 6 7.1473 5.0875 3.5880 11 6 8.3361 5.1982 2.8902 12 6 9.0074 6.4046 2.8536 13 6 8.4929 7.5045 3.5281 14 7 9.1720 8.7248 3.4976 15 6 8.6276 9.8839 4.2091 16 6 10.4285 8.8455 2.7540 17 6 10.1348 9.2609 1.3355 18 1 9.1142 9.4187 1.0193 19 6 11.1689 9.4383 0.4410 20 7 12.4116 9.2456 0.8258 21 14 10.8049 9.9539 -1.3172 22 1 10.8020 11.4361 -1.4079 23 1 11.8482 9.4047 -2.2201 24 1 9.4752 9.4305 -1.7213 25 6 7.3015 7.3885 4.2328 26 6 6.6321 6.1807 4.2602 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4027 -0.9313 32 1 3.0450 0.5744 1.7351 33 1 5.4401 1.6096 2.4082 34 1 4.1773 2.3396 3.4283 35 1 5.9441 3.8524 1.6181 36 1 5.8683 3.6829 4.5597 37 1 7.1310 2.9539 3.5388 38 1 8.7379 4.3414 2.3699 39 1 9.9334 6.4916 2.3047 40 1 9.0167 9.9009 5.2272 41 1 8.9211 10.7980 3.6928 42 1 7.5402 9.8155 4.2369 43 1 11.0609 9.5956 3.2287 44 1 10.9431 7.8847 2.7521 45 1 13.1392 9.3707 0.1967 46 1 6.8990 8.2416 4.7587 47 1 5.7060 6.0896 4.8082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181129350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:33 Heat of formation + Delta-G solvation = 20.635420 kcal Electronic energy + Delta-G solvation = -24969.477800 eV Core-core repulsion = 21345.745650 eV Total energy + Delta-G solvation = -3623.732150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.90398 -38.97253 -36.62463 -36.01271 -34.78382 -33.14357 -32.66846 -30.42742 -30.36722 -27.93735 -27.71770 -26.05331 -24.74081 -23.49767 -22.09857 -21.42616 -21.00599 -20.28280 -19.55104 -17.50460 -16.64099 -16.57841 -16.45665 -16.24741 -15.36973 -15.13658 -14.91908 -14.54859 -14.39215 -14.09678 -13.74207 -13.69620 -13.57055 -13.30285 -13.00265 -12.83827 -12.73610 -12.30756 -12.12569 -11.80066 -11.73926 -11.63612 -11.36796 -11.21819 -10.91352 -10.75669 -10.65860 -10.35425 -10.23670 -9.86355 -9.84049 -9.71846 -9.34020 -8.83280 -8.48232 -8.41379 -8.21957 -6.43817 -5.99144 -4.14794 1.58135 2.15351 2.23894 2.48466 3.00528 3.28959 3.35636 3.41746 4.16823 4.26010 4.30484 4.44355 4.56682 4.62669 4.71485 5.01521 5.08431 5.13410 5.23928 5.27699 5.32852 5.37038 5.39563 5.62114 5.66277 5.74042 5.86336 5.99803 6.02019 6.04756 6.11157 6.22176 6.31981 6.42578 6.46883 6.68357 6.82426 6.99694 7.08177 7.19974 7.24446 7.28215 7.35264 7.43529 7.64023 7.83904 8.04518 8.18179 8.29863 8.51926 8.94648 9.52087 10.97884 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.002275 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.540699 B =12302.550907 C =13581.677998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.177 4.177 3 C 0.146 3.854 4 N -0.735 5.735 5 C 0.509 3.491 6 O -0.519 6.519 7 C 0.041 3.959 8 N -0.670 5.670 9 C 0.118 3.882 10 C -0.175 4.175 11 C -0.066 4.066 12 C -0.188 4.188 13 C 0.243 3.757 14 N -0.615 5.615 15 C 0.098 3.902 16 C 0.249 3.751 17 C -0.531 4.531 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.272 1.272 25 C -0.223 4.223 26 C -0.049 4.049 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.400 0.600 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.354 0.646 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.108 0.892 39 H 0.131 0.869 40 H 0.035 0.965 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.030 0.970 44 H 0.036 0.964 45 H 0.263 0.737 46 H 0.113 0.887 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.085 -18.674 5.465 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.023 3.977 4 N -0.389 5.389 5 C 0.295 3.705 6 O -0.392 6.392 7 C -0.092 4.092 8 N -0.304 5.304 9 C -0.010 4.010 10 C -0.178 4.178 11 C -0.085 4.085 12 C -0.210 4.210 13 C 0.135 3.865 14 N -0.321 5.321 15 C -0.046 4.046 16 C 0.129 3.871 17 C -0.570 4.570 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.246 4.246 26 C -0.069 4.069 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.234 0.766 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.174 0.826 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.126 0.874 39 H 0.149 0.851 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.131 0.869 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.285 -17.380 5.157 25.749 hybrid contribution 0.554 -0.665 -1.159 1.447 sum -17.731 -18.044 3.998 25.612 Atomic orbital electron populations 1.24002 0.95810 1.02474 0.98116 1.23016 0.96249 0.98108 1.02117 1.20388 0.91884 0.95476 0.89956 1.45990 1.41604 1.20217 1.31068 1.20761 0.81165 0.82026 0.86541 1.90759 1.67235 1.34688 1.46560 1.21801 0.96507 0.93394 0.97455 1.60301 1.31698 1.30610 1.07746 1.20671 0.92229 0.94407 0.93704 1.19098 0.97499 0.95240 1.05958 1.20653 0.94252 0.96659 0.96984 1.20840 1.03152 0.92016 1.05027 1.17965 0.90408 0.86374 0.91715 1.47102 1.25349 1.06510 1.53112 1.21475 0.98085 0.89640 0.95399 1.19283 0.79623 0.97798 0.90399 1.21598 0.93422 1.46497 0.95435 0.92201 1.24964 0.94893 0.95303 0.98939 1.69931 0.98626 1.49300 1.35607 0.86525 0.78234 0.78717 0.84214 1.20633 1.21111 1.19707 1.20574 0.97485 0.98471 1.08058 1.20489 0.97413 0.91815 0.97136 0.87877 0.88097 0.86707 0.91038 0.90662 0.76606 0.92528 0.88193 0.82645 0.90967 0.95107 0.87442 0.85094 0.94627 0.91471 0.92631 0.95210 0.94625 0.92692 0.86869 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 14.32 29.01 0.42 -0.36 16 2 C -0.18 -0.91 9.63 -36.03 -0.35 -1.26 16 3 C 0.15 1.11 6.11 -5.19 -0.03 1.08 16 4 N -0.73 -5.54 5.55 -61.47 -0.34 -5.88 16 5 C 0.51 5.64 7.87 -10.99 -0.09 5.55 16 6 O -0.52 -8.35 16.20 5.56 0.09 -8.26 16 7 C 0.04 0.38 6.17 -4.98 -0.03 0.35 16 8 N -0.67 -8.60 6.11 -116.34 -0.71 -9.31 16 9 C 0.12 1.44 5.81 -4.97 -0.03 1.41 16 10 C -0.17 -2.76 5.39 -104.59 -0.56 -3.32 16 11 C -0.07 -1.15 9.69 -39.61 -0.38 -1.53 16 12 C -0.19 -3.88 9.21 -39.38 -0.36 -4.24 16 13 C 0.24 5.04 6.55 -83.79 -0.55 4.49 16 14 N -0.62 -13.46 2.99 -181.00 -0.54 -14.00 16 15 C 0.10 1.77 10.19 59.84 0.61 2.38 16 16 C 0.25 6.33 4.91 -5.19 -0.03 6.31 16 17 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 18 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.90 -25.92 13.29 55.43 0.74 -25.19 16 21 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.22 -4.02 9.21 -39.38 -0.36 -4.38 16 26 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 27 H 0.10 0.35 8.06 -52.49 -0.42 -0.08 16 28 H 0.10 0.47 7.84 -52.49 -0.41 0.06 16 29 H 0.12 0.45 8.06 -52.49 -0.42 0.03 16 30 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 1.78 8.46 -40.82 -0.35 1.43 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.35 5.08 8.42 -39.29 -0.33 4.74 16 36 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 38 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.13 2.97 6.14 -52.49 -0.32 2.65 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 42 H 0.06 0.90 6.20 -51.93 -0.32 0.57 16 43 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 44 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.11 1.85 6.14 -52.49 -0.32 1.53 16 47 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -32.91 395.03 -9.77 -42.69 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.39 Total: 5.44 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.55 Total: -8.17 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.86 Total: -54.38 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.91 -9.77 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181129350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.324 kcal (2) G-P(sol) polarization free energy of solvation -32.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds