Wall clock time and date at job start Tue Mar 31 2020 11:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50703 * 119.99786 * 2 1 4 4 N 1.46504 * 109.46785 * 124.99898 * 3 2 1 5 5 C 1.34776 * 119.99719 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99837 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99767 * 179.97438 * 5 4 3 8 8 N 1.46901 * 109.46943 * 180.02562 * 7 5 4 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47066 * 180.02562 * 9 8 7 11 11 C 1.38284 * 119.92731 * 269.72721 * 10 9 8 12 12 C 1.38107 * 120.07495 * 179.72775 * 11 10 9 13 13 C 1.38905 * 119.92196 * 0.54269 * 12 11 10 14 14 N 1.39682 * 120.07290 * 179.74950 * 13 12 11 15 15 C 1.46495 * 119.99815 * 179.97438 * 14 13 12 16 16 C 1.46503 * 119.99949 * 359.97438 * 14 13 12 17 17 C 1.50696 * 109.46934 * 89.99878 * 16 14 13 18 18 H 1.08001 * 120.00501 * 359.97438 * 17 16 14 19 19 C 1.37884 * 119.99736 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00063 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99923 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47239 * 89.99523 * 21 19 17 23 23 H 1.48499 * 109.46903 * 209.99799 * 21 19 17 24 24 H 1.48501 * 109.47015 * 329.99170 * 21 19 17 25 25 C 1.38908 * 119.85666 * 359.73022 * 13 12 11 26 26 C 1.38113 * 119.92265 * 359.97438 * 25 13 12 27 27 H 1.08001 * 119.99452 * 179.97438 * 1 2 3 28 28 H 1.07996 * 119.99925 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00182 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46739 * 5.00250 * 3 2 1 31 31 H 1.08995 * 109.47079 * 245.00091 * 3 2 1 32 32 H 0.96997 * 119.99567 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.46763 * 60.00720 * 7 5 4 34 34 H 1.08995 * 109.47483 * 300.00377 * 7 5 4 35 35 H 1.00901 * 111.00067 * 303.95401 * 8 7 5 36 36 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 37 37 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 38 38 H 1.08001 * 119.96155 * 359.97438 * 11 10 9 39 39 H 1.08001 * 120.03692 * 180.27771 * 12 11 10 40 40 H 1.09006 * 109.47190 * 90.00390 * 15 14 13 41 41 H 1.09005 * 109.47273 * 210.00039 * 15 14 13 42 42 H 1.08999 * 109.47518 * 330.00267 * 15 14 13 43 43 H 1.08992 * 109.47000 * 209.99766 * 16 14 13 44 44 H 1.08998 * 109.46696 * 330.00052 * 16 14 13 45 45 H 0.96998 * 120.00344 * 180.02562 * 20 19 17 46 46 H 1.07999 * 120.04104 * 179.97438 * 25 13 12 47 47 H 1.07994 * 119.96170 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1315 5 6 3.7790 2.4086 1.3329 6 8 3.7151 3.3555 0.5778 7 6 4.7354 2.4364 2.4972 8 7 5.4700 3.7086 2.4971 9 6 6.4145 3.7712 3.6206 10 6 7.1473 5.0875 3.5880 11 6 8.3361 5.1982 2.8902 12 6 9.0074 6.4046 2.8536 13 6 8.4929 7.5045 3.5281 14 7 9.1720 8.7248 3.4976 15 6 8.6276 9.8839 4.2091 16 6 10.4285 8.8455 2.7540 17 6 10.1348 9.2609 1.3355 18 1 9.1142 9.4187 1.0193 19 6 11.1689 9.4383 0.4410 20 7 12.4116 9.2456 0.8258 21 14 10.8049 9.9539 -1.3172 22 1 10.8020 11.4361 -1.4079 23 1 11.8482 9.4047 -2.2201 24 1 9.4752 9.4305 -1.7213 25 6 7.3015 7.3885 4.2328 26 6 6.6321 6.1807 4.2602 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4027 -0.9313 32 1 3.0450 0.5744 1.7351 33 1 5.4401 1.6096 2.4082 34 1 4.1773 2.3396 3.4283 35 1 5.9441 3.8524 1.6181 36 1 5.8683 3.6829 4.5597 37 1 7.1310 2.9539 3.5388 38 1 8.7379 4.3414 2.3699 39 1 9.9334 6.4916 2.3047 40 1 9.0167 9.9009 5.2272 41 1 8.9211 10.7980 3.6928 42 1 7.5402 9.8155 4.2369 43 1 11.0609 9.5956 3.2287 44 1 10.9431 7.8847 2.7521 45 1 13.1392 9.3707 0.1967 46 1 6.8990 8.2416 4.7587 47 1 5.7060 6.0896 4.8082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181129350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:32 Heat of formation + Delta-G solvation = -1.767118 kcal Electronic energy + Delta-G solvation = -24970.449247 eV Core-core repulsion = 21345.745650 eV Total energy + Delta-G solvation = -3624.703597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76879 -40.37493 -37.83364 -36.83484 -35.99955 -34.71672 -33.74036 -31.87180 -31.62646 -29.65518 -28.79907 -27.14239 -26.10258 -24.83896 -23.48288 -22.92667 -21.69650 -21.07915 -20.74525 -18.64433 -18.42108 -17.87097 -17.37135 -17.15891 -16.80456 -16.29674 -16.02828 -15.75421 -15.50802 -15.34227 -15.18690 -14.86814 -14.50137 -14.33183 -14.24513 -14.15788 -14.03588 -13.45981 -13.26988 -13.19044 -13.05151 -13.02334 -12.74889 -12.64407 -12.54059 -12.20644 -12.05665 -11.96804 -11.75229 -11.39577 -11.06256 -10.65085 -10.50319 -10.40812 -10.04457 -9.65079 -9.29360 -8.37067 -7.79877 -6.38209 0.72595 0.84334 1.17962 1.34923 1.36337 1.47754 1.66677 2.31953 2.34240 2.64056 3.04612 3.07155 3.58076 3.83249 3.93844 4.07505 4.12201 4.15567 4.26616 4.40919 4.42927 4.50762 4.55176 4.58006 4.66076 4.72256 4.74978 4.78335 4.87759 4.93303 4.99972 5.02294 5.14416 5.20415 5.34685 5.38552 5.59323 5.64002 5.67739 5.70381 5.78160 5.92733 6.04342 6.06736 6.24191 6.33591 6.50254 6.62565 6.82589 6.94299 7.30802 7.33496 8.81960 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.002275 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.540699 B =12302.550907 C =13581.677998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.179 4.179 3 C 0.144 3.856 4 N -0.716 5.716 5 C 0.505 3.495 6 O -0.579 6.579 7 C 0.046 3.954 8 N -0.691 5.691 9 C 0.123 3.877 10 C -0.162 4.162 11 C -0.068 4.068 12 C -0.218 4.218 13 C 0.211 3.789 14 N -0.632 5.632 15 C 0.098 3.902 16 C 0.267 3.733 17 C -0.542 4.542 18 H 0.046 0.954 19 C 0.013 3.987 20 N -0.924 5.924 21 Si 0.960 3.040 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.276 1.276 25 C -0.220 4.220 26 C -0.049 4.049 27 H 0.121 0.879 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.418 0.582 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.340 0.660 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.010 0.990 44 H 0.012 0.988 45 H 0.267 0.733 46 H 0.132 0.868 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.601 -20.972 6.401 30.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.197 4.197 3 C 0.021 3.979 4 N -0.370 5.370 5 C 0.292 3.708 6 O -0.458 6.458 7 C -0.086 4.086 8 N -0.323 5.323 9 C -0.004 4.004 10 C -0.165 4.165 11 C -0.088 4.088 12 C -0.241 4.241 13 C 0.107 3.893 14 N -0.340 5.340 15 C -0.045 4.045 16 C 0.145 3.855 17 C -0.581 4.581 18 H 0.065 0.935 19 C -0.186 4.186 20 N -0.564 5.564 21 Si 0.785 3.215 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.243 4.243 26 C -0.068 4.068 27 H 0.139 0.861 28 H 0.115 0.885 29 H 0.150 0.850 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.256 0.744 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.159 0.841 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.143 0.857 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.030 0.970 45 H 0.076 0.924 46 H 0.149 0.851 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.844 -19.747 6.145 29.363 hybrid contribution 1.210 -0.105 -1.408 1.859 sum -19.635 -19.852 4.736 28.321 Atomic orbital electron populations 1.24179 0.95735 1.03185 0.96848 1.22945 0.96313 0.97309 1.03170 1.20371 0.91609 0.96581 0.89372 1.45866 1.40300 1.19892 1.30955 1.21218 0.81371 0.81757 0.86438 1.90739 1.69200 1.37054 1.48788 1.21900 0.96458 0.92674 0.97578 1.60243 1.31780 1.33221 1.07089 1.20686 0.92618 0.92518 0.94602 1.19551 0.96392 0.97020 1.03494 1.20872 0.94816 0.95926 0.97144 1.20773 1.02883 0.94025 1.06435 1.18247 0.91815 0.85905 0.93377 1.46961 1.24750 1.08192 1.54094 1.21599 0.99285 0.87910 0.95702 1.18768 0.81251 0.95602 0.89872 1.21781 0.92807 1.46624 0.96887 0.93537 1.25759 0.94698 0.95229 1.02917 1.70028 0.99400 1.49967 1.37032 0.85526 0.77839 0.78774 0.79374 1.19465 1.20204 1.20058 1.20827 0.96242 1.00021 1.07210 1.20918 0.98114 0.91049 0.96755 0.86057 0.88547 0.84951 0.92574 0.92158 0.74449 0.89577 0.85477 0.84141 0.88550 0.93319 0.85731 0.88685 0.92765 0.92574 0.90508 0.97175 0.96997 0.92361 0.85066 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 14.32 67.77 0.97 -0.21 16 2 C -0.18 -1.50 9.63 25.64 0.25 -1.25 16 3 C 0.14 2.09 6.11 85.63 0.52 2.61 16 4 N -0.72 -9.41 5.55 -466.79 -2.59 -12.00 16 5 C 0.50 10.38 7.87 87.66 0.69 11.07 16 6 O -0.58 -18.71 16.20 -3.03 -0.05 -18.76 16 7 C 0.05 0.68 6.17 85.56 0.53 1.21 16 8 N -0.69 -15.87 6.11 -521.98 -3.19 -19.07 16 9 C 0.12 2.55 5.81 85.55 0.50 3.04 16 10 C -0.16 -4.73 5.39 -19.84 -0.11 -4.84 16 11 C -0.07 -2.36 9.69 22.25 0.22 -2.15 16 12 C -0.22 -9.44 9.21 22.40 0.21 -9.24 16 13 C 0.21 9.00 6.55 38.21 0.25 9.25 16 14 N -0.63 -28.73 2.99 -726.57 -2.17 -30.90 16 15 C 0.10 3.55 10.19 127.77 1.30 4.85 16 16 C 0.27 14.42 4.91 85.63 0.42 14.84 16 17 C -0.54 -31.49 9.39 25.60 0.24 -31.25 16 18 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 19 C 0.01 0.77 5.46 84.66 0.46 1.23 16 20 N -0.92 -55.20 13.29 21.45 0.28 -54.92 16 21 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 25 C -0.22 -7.67 9.21 22.40 0.21 -7.46 16 26 C -0.05 -1.47 9.69 22.25 0.22 -1.26 16 27 H 0.12 0.47 8.06 -2.91 -0.02 0.44 16 28 H 0.10 0.78 7.84 -2.91 -0.02 0.76 16 29 H 0.13 0.66 8.06 -2.91 -0.02 0.64 16 30 H 0.06 0.99 7.79 -2.39 -0.02 0.97 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.42 2.39 8.46 -92.71 -0.78 1.60 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.34 9.34 8.42 -89.69 -0.76 8.58 16 36 H 0.10 1.58 8.08 -2.39 -0.02 1.56 16 37 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16 38 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 39 H 0.09 4.71 6.14 -2.91 -0.02 4.69 16 40 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.06 2.11 8.07 -2.38 -0.02 2.09 16 42 H 0.08 2.40 6.20 -2.39 -0.01 2.39 16 43 H 0.01 0.58 8.07 -2.39 -0.02 0.56 16 44 H 0.01 0.70 6.20 -2.39 -0.01 0.68 16 45 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 46 H 0.13 4.00 6.14 -2.91 -0.02 3.98 16 47 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -75.59 395.03 0.61 -74.99 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -0.57 Total: 22.62 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 6.87 Total: -9.55 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -7.67 Total: -116.88 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.05 Total: -18.76 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -75.59 0.61 -74.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181129350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.219 kcal (2) G-P(sol) polarization free energy of solvation -75.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds