Wall clock time and date at job start Tue Mar 31 2020 11:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46501 * 120.00254 * 2 1 4 4 C 1.53003 * 109.46959 * 270.00195 * 3 2 1 5 5 N 1.46904 * 109.47137 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99534 * 66.04667 * 5 4 3 7 7 C 1.46901 * 111.00395 * 189.99804 * 5 4 3 8 8 C 1.52998 * 117.49828 * 243.75154 * 7 5 4 9 9 C 1.52992 * 117.50099 * 175.09008 * 7 5 4 10 10 C 1.34777 * 120.00041 * 180.02562 * 2 1 3 11 11 O 1.21585 * 120.00012 * 179.97438 * 10 2 1 12 12 N 1.34775 * 119.99741 * 359.97438 * 10 2 1 13 13 C 1.39253 * 119.99783 * 184.28187 * 12 10 2 14 14 C 1.39478 * 119.83310 * 324.72072 * 13 12 10 15 15 C 1.36370 * 120.16798 * 180.25981 * 14 13 12 16 16 C 1.40867 * 119.82631 * 359.49237 * 15 14 13 17 17 C 1.41158 * 120.16048 * 180.23331 * 16 15 14 18 18 H 1.08001 * 120.00061 * 215.05514 * 17 16 15 19 19 C 1.39889 * 120.00078 * 35.05412 * 17 16 15 20 20 N 1.30875 * 120.00321 * 355.51375 * 19 17 16 21 21 Si 1.86810 * 119.99960 * 175.51002 * 19 17 16 22 22 H 1.48502 * 109.46901 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46675 * 120.00115 * 21 19 17 24 24 H 1.48488 * 109.47135 * 240.00221 * 21 19 17 25 25 C 1.40865 * 119.67470 * 0.52662 * 16 15 14 26 26 C 1.36376 * 119.82679 * 359.72858 * 25 16 15 27 27 H 1.09003 * 109.47398 * 270.00083 * 1 2 3 28 28 H 1.09009 * 109.47398 * 29.99633 * 1 2 3 29 29 H 1.08998 * 109.47448 * 149.99959 * 1 2 3 30 30 H 1.08995 * 109.46890 * 29.99710 * 3 2 1 31 31 H 1.08994 * 109.47637 * 150.00247 * 3 2 1 32 32 H 1.09000 * 109.47341 * 299.99672 * 4 3 2 33 33 H 1.09000 * 109.47524 * 59.99923 * 4 3 2 34 34 H 1.08999 * 109.47732 * 60.00353 * 6 5 4 35 35 H 1.09002 * 109.47002 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47447 * 300.00030 * 6 5 4 37 37 H 1.09002 * 115.54501 * 29.41804 * 7 5 4 38 38 H 1.08995 * 117.50260 * 359.97438 * 8 7 5 39 39 H 1.09003 * 117.49520 * 145.02458 * 8 7 5 40 40 H 1.08998 * 117.50118 * 214.98351 * 9 7 5 41 41 H 1.09005 * 117.50069 * 359.97389 * 9 7 5 42 42 H 0.96992 * 120.00243 * 4.27344 * 12 10 2 43 43 H 1.07998 * 119.91667 * 359.97438 * 14 13 12 44 44 H 1.07998 * 120.08697 * 179.74678 * 15 14 13 45 45 H 0.97000 * 120.00449 * 179.97438 * 20 19 17 46 46 H 1.08000 * 120.08451 * 179.70825 * 25 16 15 47 47 H 1.08003 * 119.91478 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 7 3.1865 2.9829 -1.4426 6 6 4.5351 2.8126 -0.8856 7 6 3.2434 3.5578 -2.7932 8 6 4.6215 3.7020 -3.4420 9 6 3.8753 4.9428 -2.9453 10 6 2.1388 -1.1672 -0.0005 11 8 3.3547 -1.1672 -0.0010 12 7 1.4649 -2.3344 -0.0005 13 6 2.1583 -3.5387 0.0890 14 6 3.4029 -3.6701 -0.5267 15 6 4.0855 -4.8481 -0.4478 16 6 3.5352 -5.9302 0.2667 17 6 4.2379 -7.1511 0.3570 18 1 3.6972 -8.0861 0.3647 19 6 5.6345 -7.1502 0.4364 20 7 6.2947 -6.0244 0.3388 21 14 6.5572 -8.7558 0.6820 22 1 5.5869 -9.8772 0.7609 23 1 7.4776 -8.9777 -0.4621 24 1 7.3405 -8.6888 1.9417 25 6 2.2775 -5.7900 0.8854 26 6 1.6044 -4.6075 0.7934 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1384 0.5137 32 1 3.0415 0.9507 -1.9564 33 1 1.5000 1.8407 -1.9564 34 1 5.0879 2.0903 -1.4864 35 1 5.0564 3.7698 -0.8970 36 1 4.4617 2.4514 0.1402 37 1 2.4038 3.3134 -3.4439 38 1 5.4859 3.3708 -2.8666 39 1 4.6884 3.5530 -4.5197 40 1 3.4517 5.6096 -3.6964 41 1 4.2484 5.4277 -2.0432 42 1 0.4970 -2.3355 -0.0627 43 1 3.8251 -2.8384 -1.0711 44 1 5.0472 -4.9497 -0.9285 45 1 7.2632 -6.0236 0.3942 46 1 1.8473 -6.6169 1.4309 47 1 0.6398 -4.4985 1.2669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184005155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:07 Heat of formation + Delta-G solvation = 25.498565 kcal Electronic energy + Delta-G solvation = -26123.435585 eV Core-core repulsion = 22499.914317 eV Total energy + Delta-G solvation = -3623.521268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.60797 -39.94578 -39.25510 -36.98412 -36.18208 -35.12555 -34.40187 -31.42587 -30.98680 -29.87518 -27.98778 -27.40277 -26.28993 -23.84761 -23.26458 -23.11047 -22.36256 -21.02998 -20.70279 -19.31730 -19.19226 -18.09627 -17.78520 -17.11690 -16.78028 -16.36338 -16.12955 -15.82530 -15.70347 -15.13608 -14.96846 -14.56667 -14.31063 -14.19514 -14.04624 -13.93964 -13.58819 -13.45023 -13.37591 -13.18304 -12.91565 -12.86637 -12.71611 -12.62654 -12.35011 -12.29011 -11.86246 -11.77236 -11.73600 -11.65801 -11.33597 -11.27301 -10.90021 -10.53359 -9.72410 -9.43398 -9.24253 -8.68790 -8.48029 -6.30895 0.86446 1.14622 1.38716 1.45709 1.54934 1.64941 2.15986 2.24665 2.64722 2.84141 3.03101 3.19205 3.70898 3.77368 3.92900 4.03545 4.06849 4.13163 4.26367 4.31548 4.42911 4.44969 4.49715 4.53282 4.66601 4.72667 4.75145 4.85666 4.86402 4.89953 4.96300 5.01373 5.09391 5.12292 5.17171 5.21646 5.34461 5.42623 5.53440 5.69994 5.80060 5.92011 6.01425 6.05977 6.14087 6.17664 6.38329 6.73090 6.97949 7.02556 7.04834 7.63882 8.45246 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.002681 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.102422 B =10439.756606 C =11760.066364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.627 5.627 3 C 0.140 3.860 4 C 0.051 3.949 5 N -0.503 5.503 6 C 0.019 3.981 7 C 0.005 3.995 8 C -0.228 4.228 9 C -0.153 4.153 10 C 0.689 3.311 11 O -0.624 6.624 12 N -0.658 5.658 13 C 0.041 3.959 14 C -0.108 4.108 15 C -0.167 4.167 16 C 0.063 3.937 17 C -0.495 4.495 18 H 0.080 0.920 19 C 0.020 3.980 20 N -0.849 5.849 21 Si 0.991 3.009 22 H -0.253 1.253 23 H -0.269 1.269 24 H -0.270 1.270 25 C -0.206 4.206 26 C -0.109 4.109 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.006 0.994 33 H 0.094 0.906 34 H 0.015 0.985 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.414 0.586 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.281 0.719 46 H 0.114 0.886 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.407 18.451 -3.650 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.364 5.364 3 C 0.016 3.984 4 C -0.078 4.078 5 N -0.225 5.225 6 C -0.129 4.129 7 C -0.104 4.104 8 C -0.267 4.267 9 C -0.191 4.191 10 C 0.391 3.609 11 O -0.504 6.504 12 N -0.308 5.308 13 C -0.054 4.054 14 C -0.129 4.129 15 C -0.187 4.187 16 C 0.060 3.940 17 C -0.526 4.526 18 H 0.098 0.902 19 C -0.191 4.191 20 N -0.478 5.478 21 Si 0.812 3.188 22 H -0.176 1.176 23 H -0.194 1.194 24 H -0.195 1.195 25 C -0.226 4.226 26 C -0.130 4.130 27 H 0.090 0.910 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.113 0.887 34 H 0.034 0.966 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.115 0.885 42 H 0.253 0.747 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.091 0.909 46 H 0.132 0.868 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.634 18.911 -3.311 21.947 hybrid contribution 1.113 -1.266 -0.521 1.764 sum -9.521 17.645 -3.833 20.413 Atomic orbital electron populations 1.22056 0.76814 1.04703 1.03399 1.47033 1.08083 1.03486 1.77840 1.21274 0.97472 0.83450 0.96160 1.22423 0.98698 0.89058 0.97649 1.61903 1.16191 1.24547 1.19898 1.22534 0.89434 1.01175 0.99776 1.22836 0.96758 1.00709 0.90117 1.23593 0.96843 1.04715 1.01584 1.23121 1.02452 0.90326 1.03202 1.16244 0.85050 0.81493 0.78139 1.90906 1.14027 1.86516 1.58963 1.42029 1.09954 1.02405 1.76380 1.17149 0.95378 0.86383 1.06441 1.20635 0.95590 0.96496 1.00164 1.21153 1.00704 0.94202 1.02656 1.18065 0.92235 0.93956 0.89696 1.19771 0.92171 0.93886 1.46802 0.90191 1.26859 0.98755 1.01336 0.92103 1.69932 1.09393 1.29187 1.39240 0.85023 0.78014 0.77292 0.78467 1.17615 1.19359 1.19523 1.20951 0.97937 0.98110 1.05615 1.20411 1.00616 0.92756 0.99176 0.91008 0.87987 0.90723 0.86805 0.92544 0.97529 0.88739 0.96616 0.89840 0.91351 0.85616 0.89163 0.88220 0.86709 0.88515 0.74715 0.88951 0.87965 0.90891 0.86753 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.24 127.77 1.31 2.31 16 2 N -0.63 -15.72 2.87 -864.94 -2.48 -18.21 16 3 C 0.14 3.26 5.33 86.38 0.46 3.72 16 4 C 0.05 1.15 5.26 86.30 0.45 1.60 16 5 N -0.50 -10.41 4.97 -897.04 -4.46 -14.87 16 6 C 0.02 0.42 7.95 127.69 1.02 1.44 16 7 C 0.00 0.09 6.11 44.91 0.27 0.36 16 8 C -0.23 -4.00 9.51 30.62 0.29 -3.71 16 9 C -0.15 -2.20 9.99 30.62 0.31 -1.89 16 10 C 0.69 25.30 8.11 179.05 1.45 26.75 16 11 O -0.62 -29.89 13.34 -3.98 -0.05 -29.94 16 12 N -0.66 -22.88 5.18 -316.78 -1.64 -24.52 16 13 C 0.04 1.82 6.31 38.56 0.24 2.06 16 14 C -0.11 -5.77 8.61 22.13 0.19 -5.58 16 15 C -0.17 -9.67 8.61 22.48 0.19 -9.47 16 16 C 0.06 3.54 5.55 -21.28 -0.12 3.42 16 17 C -0.50 -27.64 9.02 23.39 0.21 -27.43 16 18 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 19 C 0.02 1.09 5.42 85.24 0.46 1.55 16 20 N -0.85 -48.48 10.61 21.82 0.23 -48.25 16 21 Si 0.99 40.61 29.56 68.60 2.03 42.64 16 22 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 23 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 25 C -0.21 -9.98 9.74 22.48 0.22 -9.76 16 26 C -0.11 -4.62 9.90 22.13 0.22 -4.40 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 0.88 8.07 -2.38 -0.02 0.86 16 29 H 0.07 0.93 6.30 -2.39 -0.02 0.92 16 30 H 0.11 1.94 8.07 -2.39 -0.02 1.92 16 31 H 0.06 1.68 5.83 -2.39 -0.01 1.66 16 32 H 0.01 0.19 8.12 -2.39 -0.02 0.17 16 33 H 0.09 1.71 7.96 -2.39 -0.02 1.69 16 34 H 0.02 0.41 7.23 -2.39 -0.02 0.39 16 35 H 0.08 1.56 6.63 -2.39 -0.02 1.54 16 36 H 0.07 1.61 6.47 -2.39 -0.02 1.60 16 37 H 0.13 1.96 7.93 -2.39 -0.02 1.95 16 38 H 0.09 1.78 5.90 -2.39 -0.01 1.76 16 39 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 1.40 7.56 -2.38 -0.02 1.38 16 42 H 0.41 10.41 6.51 -92.71 -0.60 9.81 16 43 H 0.09 5.12 6.22 -2.91 -0.02 5.11 16 44 H 0.10 6.36 6.15 -2.91 -0.02 6.34 16 45 H 0.28 14.68 8.30 -92.71 -0.77 13.91 16 46 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 47 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -74.19 375.16 1.18 -73.01 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.38 Total: 39.16 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 7.18 Total: -19.03 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -8.35 Total: -105.84 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.05 Total: -29.94 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -74.19 1.18 -73.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184005155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.509 kcal (2) G-P(sol) polarization free energy of solvation -74.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds