Wall clock time and date at job start Tue Mar 31 2020 11:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46507 * 119.99815 * 2 1 4 4 C 1.52997 * 109.47024 * 270.00098 * 3 2 1 5 5 C 1.53000 * 109.46811 * 179.97438 * 4 3 2 6 6 C 1.53117 * 109.52114 * 175.00159 * 5 4 3 7 7 C 1.53044 * 109.27792 * 177.56078 * 6 5 4 8 8 N 1.46847 * 109.51335 * 300.82256 * 7 6 5 9 9 C 1.39168 * 111.00144 * 185.83469 * 8 7 6 10 10 C 1.39479 * 120.86228 * 359.72187 * 9 8 7 11 11 C 1.37895 * 119.06220 * 179.73127 * 10 9 8 12 12 N 1.31997 * 120.84669 * 0.55628 * 11 10 9 13 13 C 1.32001 * 121.90476 * 359.71624 * 12 11 10 14 14 C 1.37886 * 120.84622 * 359.97438 * 13 12 11 15 15 C 1.46830 * 111.21086 * 61.74856 * 8 7 6 16 16 C 1.53038 * 109.51757 * 298.25173 * 15 8 7 17 17 C 1.34773 * 120.00723 * 180.02562 * 2 1 3 18 18 O 1.21677 * 120.00613 * 180.02562 * 17 2 1 19 19 C 1.46383 * 119.99246 * 359.97438 * 17 2 1 20 20 H 1.07996 * 120.00325 * 0.02562 * 19 17 2 21 21 C 1.40054 * 119.99746 * 179.97438 * 19 17 2 22 22 N 1.30671 * 119.99607 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99917 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46993 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46659 * 120.00149 * 23 21 19 26 26 H 1.48499 * 109.46843 * 239.99829 * 23 21 19 27 27 H 1.09003 * 109.47562 * 90.00008 * 1 2 3 28 28 H 1.09005 * 109.47021 * 209.99714 * 1 2 3 29 29 H 1.09001 * 109.47604 * 329.99897 * 1 2 3 30 30 H 1.09000 * 109.46959 * 149.99901 * 3 2 1 31 31 H 1.08997 * 109.46901 * 30.00185 * 3 2 1 32 32 H 1.09000 * 109.47414 * 60.00081 * 4 3 2 33 33 H 1.08997 * 109.47353 * 299.99811 * 4 3 2 34 34 H 1.08998 * 109.52583 * 54.87570 * 5 4 3 35 35 H 1.09001 * 109.50874 * 57.62258 * 6 5 4 36 36 H 1.09002 * 109.53469 * 297.51379 * 6 5 4 37 37 H 1.09002 * 109.46396 * 60.83566 * 7 6 5 38 38 H 1.08994 * 109.46485 * 180.81491 * 7 6 5 39 39 H 1.07992 * 120.46967 * 359.97438 * 10 9 8 40 40 H 1.08006 * 119.58003 * 180.29734 * 11 10 9 41 41 H 1.08003 * 119.57355 * 180.02562 * 13 12 11 42 42 H 1.08002 * 120.46980 * 179.97438 * 14 13 12 43 43 H 1.08995 * 109.46742 * 178.23410 * 15 8 7 44 44 H 1.09004 * 109.45381 * 58.25744 * 15 8 7 45 45 H 1.08997 * 109.50308 * 299.23764 * 16 15 8 46 46 H 1.09000 * 109.50697 * 179.11489 * 16 15 8 47 47 H 0.97003 * 119.99531 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2168 3.0358 -1.4424 6 6 3.5815 3.4162 -2.8801 7 6 4.2920 4.7717 -2.8793 8 7 3.4085 5.7882 -2.2940 9 6 3.9712 7.0570 -2.3968 10 6 5.2204 7.2397 -2.9897 11 6 5.7404 8.5139 -3.0770 12 7 5.0769 9.5500 -2.5989 13 6 3.8950 9.4175 -2.0261 14 6 3.3030 8.1781 -1.9050 15 6 3.0829 5.4690 -0.8983 16 6 2.3364 4.1343 -0.8399 17 6 2.1389 -1.1671 -0.0005 18 8 3.3557 -1.1671 -0.0001 19 6 1.4070 -2.4348 -0.0005 20 1 0.3271 -2.4349 -0.0005 21 6 2.1073 -3.6477 -0.0016 22 7 3.4140 -3.6475 -0.0021 23 14 1.1734 -5.2655 -0.0023 24 1 -0.2866 -4.9941 -0.0022 25 1 1.5317 -6.0432 -1.2155 26 1 1.5327 -6.0449 1.2095 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 3.1498 1.1385 0.5138 31 1 1.6083 2.0284 0.5139 32 1 1.5000 1.8408 -1.9563 33 1 3.0415 0.9509 -1.9563 34 1 4.1265 2.9317 -0.8512 35 1 2.6742 3.4813 -3.4807 36 1 4.2431 2.6589 -3.3008 37 1 5.2063 4.7023 -2.2900 38 1 4.5402 5.0522 -3.9029 39 1 5.7709 6.3958 -3.3784 40 1 6.7049 8.6656 -3.5388 41 1 3.3849 10.2912 -1.6481 42 1 2.3359 8.0767 -1.4349 43 1 2.4532 6.2558 -0.4831 44 1 4.0030 5.3962 -0.3184 45 1 1.4096 4.2106 -1.4084 46 1 2.1086 3.8898 0.1976 47 1 3.8991 -4.4876 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185946298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:38 Heat of formation + Delta-G solvation = -1.178345 kcal Electronic energy + Delta-G solvation = -26116.911781 eV Core-core repulsion = 22492.233715 eV Total energy + Delta-G solvation = -3624.678066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98883 -39.03742 -37.73285 -35.58894 -33.75364 -32.44770 -31.99238 -31.31012 -30.79551 -28.99210 -26.39967 -25.68981 -24.67517 -23.99201 -22.73468 -22.28343 -21.12594 -19.78018 -19.01893 -18.05167 -16.56849 -16.48041 -15.92728 -15.65058 -15.30746 -15.04123 -14.77703 -14.48701 -14.35428 -14.17520 -13.95746 -13.88577 -13.79555 -13.30038 -12.93226 -12.72034 -12.24425 -12.10632 -11.92907 -11.58893 -11.48024 -11.40328 -11.37697 -11.21133 -10.99542 -10.87272 -10.53510 -10.38467 -10.32857 -10.26772 -10.10312 -9.94898 -9.73232 -9.43600 -8.87618 -8.46876 -7.58820 -7.20685 -6.20869 -4.65822 0.90368 1.03320 3.10702 3.19168 3.23247 3.29021 3.63381 4.07407 4.23528 4.38906 4.51895 4.54929 4.59029 4.70338 4.76716 4.84924 4.91117 5.01720 5.12637 5.16749 5.24272 5.34326 5.46990 5.50675 5.54163 5.59541 5.61520 5.67273 5.72337 5.87946 5.96417 5.97206 6.02057 6.05202 6.08434 6.23026 6.32863 6.38998 6.47502 6.53830 6.64574 6.67232 6.83012 6.86967 7.43271 7.64178 7.78622 8.14244 8.35715 9.01107 9.42373 10.56578 10.75645 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037989 B = 0.002170 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.881962 B =12897.264568 C =13309.113866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.650 5.650 3 C 0.129 3.871 4 C -0.124 4.124 5 C -0.087 4.087 6 C -0.112 4.112 7 C 0.051 3.949 8 N -0.485 5.485 9 C 0.161 3.839 10 C -0.229 4.229 11 C 0.122 3.878 12 N -0.512 5.512 13 C 0.118 3.882 14 C -0.199 4.199 15 C 0.061 3.939 16 C -0.114 4.114 17 C 0.556 3.444 18 O -0.577 6.577 19 C -0.544 4.544 20 H 0.072 0.928 21 C 0.087 3.913 22 N -0.768 5.768 23 Si 0.906 3.094 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.276 1.276 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.102 20.398 -4.210 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.388 5.388 3 C 0.004 3.996 4 C -0.163 4.163 5 C -0.106 4.106 6 C -0.150 4.150 7 C -0.076 4.076 8 N -0.199 5.199 9 C 0.054 3.946 10 C -0.252 4.252 11 C -0.035 4.035 12 N -0.223 5.223 13 C -0.038 4.038 14 C -0.222 4.222 15 C -0.064 4.064 16 C -0.152 4.152 17 C 0.362 3.638 18 O -0.460 6.460 19 C -0.581 4.581 20 H 0.090 0.910 21 C -0.133 4.133 22 N -0.396 5.396 23 Si 0.730 3.270 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.155 0.845 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.153 0.847 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.376 21.004 -4.499 21.484 hybrid contribution -0.369 -1.672 0.264 1.733 sum -0.745 19.332 -4.235 19.804 Atomic orbital electron populations 1.21373 0.82347 1.00916 0.99472 1.47989 1.05088 1.05554 1.80214 1.21040 0.97469 0.86129 0.94916 1.21975 0.99687 0.95288 0.99340 1.21198 0.98840 0.94925 0.95664 1.21683 1.01132 0.94538 0.97675 1.22356 0.93936 0.91464 0.99802 1.58733 1.42024 1.00209 1.18975 1.19343 0.90684 0.90896 0.93698 1.22319 0.95683 0.99948 1.07277 1.22586 0.98822 0.87771 0.94324 1.67728 1.08808 1.34239 1.11507 1.22594 0.91084 0.96357 0.93769 1.21806 1.02077 0.92515 1.05810 1.22294 1.00034 0.99011 0.85089 1.21760 0.99047 0.92421 1.01961 1.18243 0.86973 0.82320 0.76277 1.90585 1.14033 1.86355 1.55041 1.21067 0.93736 0.89334 1.53942 0.90970 1.25748 0.94612 1.00329 0.92617 1.70034 1.07054 1.27119 1.35438 0.86349 0.80539 0.81862 0.78224 1.18746 1.20174 1.20170 0.95256 0.91109 0.94220 0.91300 0.93131 0.92593 0.91305 0.91173 0.90956 0.90652 0.93252 0.90030 0.84460 0.82931 0.82797 0.84669 0.90038 0.93523 0.90844 0.90450 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.89 10.19 59.84 0.61 2.50 16 2 N -0.65 -14.57 2.87 -183.25 -0.53 -15.09 16 3 C 0.13 2.39 5.21 -4.04 -0.02 2.37 16 4 C -0.12 -2.01 5.01 -26.73 -0.13 -2.14 16 5 C -0.09 -1.09 2.25 -90.49 -0.20 -1.30 16 6 C -0.11 -1.26 5.38 -26.65 -0.14 -1.40 16 7 C 0.05 0.50 4.16 -3.83 -0.02 0.48 16 8 N -0.49 -4.93 4.70 -170.96 -0.80 -5.74 16 9 C 0.16 1.62 5.65 -83.61 -0.47 1.15 16 10 C -0.23 -2.14 8.88 -39.24 -0.35 -2.49 16 11 C 0.12 1.14 11.17 -17.61 -0.20 0.95 16 12 N -0.51 -5.49 10.36 -13.35 -0.14 -5.62 16 13 C 0.12 1.08 11.17 -17.61 -0.20 0.88 16 14 C -0.20 -1.82 9.25 -39.25 -0.36 -2.18 16 15 C 0.06 0.58 5.26 -3.84 -0.02 0.56 16 16 C -0.11 -1.21 5.08 -26.65 -0.14 -1.34 16 17 C 0.56 15.68 7.61 -12.98 -0.10 15.58 16 18 O -0.58 -18.41 14.60 5.21 0.08 -18.34 16 19 C -0.54 -15.19 8.74 -35.63 -0.31 -15.50 16 20 H 0.07 1.85 6.00 -52.49 -0.31 1.53 16 21 C 0.09 2.40 5.50 -17.36 -0.10 2.30 16 22 N -0.77 -22.84 11.83 55.55 0.66 -22.19 16 23 Si 0.91 19.95 29.56 -169.99 -5.02 14.92 16 24 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.34 6.09 -51.93 -0.32 1.03 16 29 H 0.04 0.59 7.89 -51.93 -0.41 0.18 16 30 H 0.07 1.45 7.42 -51.93 -0.39 1.06 16 31 H 0.05 0.78 6.39 -51.93 -0.33 0.45 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.48 7.76 -51.93 -0.40 0.08 16 38 H 0.08 0.73 7.04 -51.93 -0.37 0.36 16 39 H 0.14 1.09 5.97 -52.49 -0.31 0.77 16 40 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.15 0.99 8.06 -52.48 -0.42 0.56 16 42 H 0.14 1.02 7.24 -52.49 -0.38 0.65 16 43 H 0.08 0.68 6.78 -51.93 -0.35 0.33 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.80 6.70 -51.93 -0.35 0.45 16 47 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 LS Contribution 370.57 15.07 5.58 5.58 Total: -1.00 -34.62 370.57 -9.60 -44.22 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.28 Total: 1.84 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.15 Total: 0.41 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.81 Total: -48.64 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.08 Total: -18.34 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.62 -9.60 -44.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185946298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.046 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds