Wall clock time and date at job start Tue Mar 31 2020 11:40:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46492 * 1
3 3 C 1.46507 * 119.99815 * 2 1
4 4 C 1.52997 * 109.47024 * 270.00098 * 3 2 1
5 5 C 1.53000 * 109.46811 * 179.97438 * 4 3 2
6 6 C 1.53117 * 109.52114 * 175.00159 * 5 4 3
7 7 C 1.53044 * 109.27792 * 177.56078 * 6 5 4
8 8 N 1.46847 * 109.51335 * 300.82256 * 7 6 5
9 9 C 1.39168 * 111.00144 * 185.83469 * 8 7 6
10 10 C 1.39479 * 120.86228 * 359.72187 * 9 8 7
11 11 C 1.37895 * 119.06220 * 179.73127 * 10 9 8
12 12 N 1.31997 * 120.84669 * 0.55628 * 11 10 9
13 13 C 1.32001 * 121.90476 * 359.71624 * 12 11 10
14 14 C 1.37886 * 120.84622 * 359.97438 * 13 12 11
15 15 C 1.46830 * 111.21086 * 61.74856 * 8 7 6
16 16 C 1.53038 * 109.51757 * 298.25173 * 15 8 7
17 17 C 1.34773 * 120.00723 * 180.02562 * 2 1 3
18 18 O 1.21677 * 120.00613 * 180.02562 * 17 2 1
19 19 C 1.46383 * 119.99246 * 359.97438 * 17 2 1
20 20 H 1.07996 * 120.00325 * 0.02562 * 19 17 2
21 21 C 1.40054 * 119.99746 * 179.97438 * 19 17 2
22 22 N 1.30671 * 119.99607 * 0.02562 * 21 19 17
23 23 Si 1.86803 * 119.99917 * 180.02562 * 21 19 17
24 24 H 1.48496 * 109.46993 * 0.02562 * 23 21 19
25 25 H 1.48497 * 109.46659 * 120.00149 * 23 21 19
26 26 H 1.48499 * 109.46843 * 239.99829 * 23 21 19
27 27 H 1.09003 * 109.47562 * 90.00008 * 1 2 3
28 28 H 1.09005 * 109.47021 * 209.99714 * 1 2 3
29 29 H 1.09001 * 109.47604 * 329.99897 * 1 2 3
30 30 H 1.09000 * 109.46959 * 149.99901 * 3 2 1
31 31 H 1.08997 * 109.46901 * 30.00185 * 3 2 1
32 32 H 1.09000 * 109.47414 * 60.00081 * 4 3 2
33 33 H 1.08997 * 109.47353 * 299.99811 * 4 3 2
34 34 H 1.08998 * 109.52583 * 54.87570 * 5 4 3
35 35 H 1.09001 * 109.50874 * 57.62258 * 6 5 4
36 36 H 1.09002 * 109.53469 * 297.51379 * 6 5 4
37 37 H 1.09002 * 109.46396 * 60.83566 * 7 6 5
38 38 H 1.08994 * 109.46485 * 180.81491 * 7 6 5
39 39 H 1.07992 * 120.46967 * 359.97438 * 10 9 8
40 40 H 1.08006 * 119.58003 * 180.29734 * 11 10 9
41 41 H 1.08003 * 119.57355 * 180.02562 * 13 12 11
42 42 H 1.08002 * 120.46980 * 179.97438 * 14 13 12
43 43 H 1.08995 * 109.46742 * 178.23410 * 15 8 7
44 44 H 1.09004 * 109.45381 * 58.25744 * 15 8 7
45 45 H 1.08997 * 109.50308 * 299.23764 * 16 15 8
46 46 H 1.09000 * 109.50697 * 179.11489 * 16 15 8
47 47 H 0.97003 * 119.99531 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 6 2.4524 1.7105 -1.4425
5 6 3.2168 3.0358 -1.4424
6 6 3.5815 3.4162 -2.8801
7 6 4.2920 4.7717 -2.8793
8 7 3.4085 5.7882 -2.2940
9 6 3.9712 7.0570 -2.3968
10 6 5.2204 7.2397 -2.9897
11 6 5.7404 8.5139 -3.0770
12 7 5.0769 9.5500 -2.5989
13 6 3.8950 9.4175 -2.0261
14 6 3.3030 8.1781 -1.9050
15 6 3.0829 5.4690 -0.8983
16 6 2.3364 4.1343 -0.8399
17 6 2.1389 -1.1671 -0.0005
18 8 3.3557 -1.1671 -0.0001
19 6 1.4070 -2.4348 -0.0005
20 1 0.3271 -2.4349 -0.0005
21 6 2.1073 -3.6477 -0.0016
22 7 3.4140 -3.6475 -0.0021
23 14 1.1734 -5.2655 -0.0023
24 1 -0.2866 -4.9941 -0.0022
25 1 1.5317 -6.0432 -1.2155
26 1 1.5327 -6.0449 1.2095
27 1 -0.3634 0.0000 -1.0277
28 1 -0.3633 -0.8901 0.5138
29 1 -0.3634 0.8900 0.5138
30 1 3.1498 1.1385 0.5138
31 1 1.6083 2.0284 0.5139
32 1 1.5000 1.8408 -1.9563
33 1 3.0415 0.9509 -1.9563
34 1 4.1265 2.9317 -0.8512
35 1 2.6742 3.4813 -3.4807
36 1 4.2431 2.6589 -3.3008
37 1 5.2063 4.7023 -2.2900
38 1 4.5402 5.0522 -3.9029
39 1 5.7709 6.3958 -3.3784
40 1 6.7049 8.6656 -3.5388
41 1 3.3849 10.2912 -1.6481
42 1 2.3359 8.0767 -1.4349
43 1 2.4532 6.2558 -0.4831
44 1 4.0030 5.3962 -0.3184
45 1 1.4096 4.2106 -1.4084
46 1 2.1086 3.8898 0.1976
47 1 3.8991 -4.4876 -0.0025
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000185946298.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:40:38
Heat of formation + Delta-G solvation = -1.178345 kcal
Electronic energy + Delta-G solvation = -26116.911781 eV
Core-core repulsion = 22492.233715 eV
Total energy + Delta-G solvation = -3624.678066 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.98883 -39.03742 -37.73285 -35.58894 -33.75364 -32.44770 -31.99238 -31.31012
-30.79551 -28.99210 -26.39967 -25.68981 -24.67517 -23.99201 -22.73468 -22.28343
-21.12594 -19.78018 -19.01893 -18.05167 -16.56849 -16.48041 -15.92728 -15.65058
-15.30746 -15.04123 -14.77703 -14.48701 -14.35428 -14.17520 -13.95746 -13.88577
-13.79555 -13.30038 -12.93226 -12.72034 -12.24425 -12.10632 -11.92907 -11.58893
-11.48024 -11.40328 -11.37697 -11.21133 -10.99542 -10.87272 -10.53510 -10.38467
-10.32857 -10.26772 -10.10312 -9.94898 -9.73232 -9.43600 -8.87618 -8.46876
-7.58820 -7.20685 -6.20869 -4.65822 0.90368 1.03320 3.10702 3.19168
3.23247 3.29021 3.63381 4.07407 4.23528 4.38906 4.51895 4.54929
4.59029 4.70338 4.76716 4.84924 4.91117 5.01720 5.12637 5.16749
5.24272 5.34326 5.46990 5.50675 5.54163 5.59541 5.61520 5.67273
5.72337 5.87946 5.96417 5.97206 6.02057 6.05202 6.08434 6.23026
6.32863 6.38998 6.47502 6.53830 6.64574 6.67232 6.83012 6.86967
7.43271 7.64178 7.78622 8.14244 8.35715 9.01107 9.42373 10.56578
10.75645
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.037989 B = 0.002170 C = 0.002103
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 736.881962 B =12897.264568 C =13309.113866
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.104 3.896
2 N -0.650 5.650
3 C 0.129 3.871
4 C -0.124 4.124
5 C -0.087 4.087
6 C -0.112 4.112
7 C 0.051 3.949
8 N -0.485 5.485
9 C 0.161 3.839
10 C -0.229 4.229
11 C 0.122 3.878
12 N -0.512 5.512
13 C 0.118 3.882
14 C -0.199 4.199
15 C 0.061 3.939
16 C -0.114 4.114
17 C 0.556 3.444
18 O -0.577 6.577
19 C -0.544 4.544
20 H 0.072 0.928
21 C 0.087 3.913
22 N -0.768 5.768
23 Si 0.906 3.094
24 H -0.264 1.264
25 H -0.276 1.276
26 H -0.276 1.276
27 H 0.029 0.971
28 H 0.070 0.930
29 H 0.039 0.961
30 H 0.069 0.931
31 H 0.050 0.950
32 H 0.055 0.945
33 H 0.068 0.932
34 H 0.070 0.930
35 H 0.072 0.928
36 H 0.075 0.925
37 H 0.049 0.951
38 H 0.081 0.919
39 H 0.138 0.862
40 H 0.153 0.847
41 H 0.155 0.845
42 H 0.135 0.865
43 H 0.081 0.919
44 H 0.046 0.954
45 H 0.073 0.927
46 H 0.077 0.923
47 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.102 20.398 -4.210 20.857
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.041 4.041
2 N -0.388 5.388
3 C 0.004 3.996
4 C -0.163 4.163
5 C -0.106 4.106
6 C -0.150 4.150
7 C -0.076 4.076
8 N -0.199 5.199
9 C 0.054 3.946
10 C -0.252 4.252
11 C -0.035 4.035
12 N -0.223 5.223
13 C -0.038 4.038
14 C -0.222 4.222
15 C -0.064 4.064
16 C -0.152 4.152
17 C 0.362 3.638
18 O -0.460 6.460
19 C -0.581 4.581
20 H 0.090 0.910
21 C -0.133 4.133
22 N -0.396 5.396
23 Si 0.730 3.270
24 H -0.187 1.187
25 H -0.202 1.202
26 H -0.202 1.202
27 H 0.047 0.953
28 H 0.089 0.911
29 H 0.058 0.942
30 H 0.087 0.913
31 H 0.069 0.931
32 H 0.074 0.926
33 H 0.087 0.913
34 H 0.088 0.912
35 H 0.090 0.910
36 H 0.093 0.907
37 H 0.067 0.933
38 H 0.100 0.900
39 H 0.155 0.845
40 H 0.171 0.829
41 H 0.172 0.828
42 H 0.153 0.847
43 H 0.100 0.900
44 H 0.065 0.935
45 H 0.092 0.908
46 H 0.095 0.905
47 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -0.376 21.004 -4.499 21.484
hybrid contribution -0.369 -1.672 0.264 1.733
sum -0.745 19.332 -4.235 19.804
Atomic orbital electron populations
1.21373 0.82347 1.00916 0.99472 1.47989 1.05088 1.05554 1.80214
1.21040 0.97469 0.86129 0.94916 1.21975 0.99687 0.95288 0.99340
1.21198 0.98840 0.94925 0.95664 1.21683 1.01132 0.94538 0.97675
1.22356 0.93936 0.91464 0.99802 1.58733 1.42024 1.00209 1.18975
1.19343 0.90684 0.90896 0.93698 1.22319 0.95683 0.99948 1.07277
1.22586 0.98822 0.87771 0.94324 1.67728 1.08808 1.34239 1.11507
1.22594 0.91084 0.96357 0.93769 1.21806 1.02077 0.92515 1.05810
1.22294 1.00034 0.99011 0.85089 1.21760 0.99047 0.92421 1.01961
1.18243 0.86973 0.82320 0.76277 1.90585 1.14033 1.86355 1.55041
1.21067 0.93736 0.89334 1.53942 0.90970 1.25748 0.94612 1.00329
0.92617 1.70034 1.07054 1.27119 1.35438 0.86349 0.80539 0.81862
0.78224 1.18746 1.20174 1.20170 0.95256 0.91109 0.94220 0.91300
0.93131 0.92593 0.91305 0.91173 0.90956 0.90652 0.93252 0.90030
0.84460 0.82931 0.82797 0.84669 0.90038 0.93523 0.90844 0.90450
0.92206
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.89 10.19 59.84 0.61 2.50 16
2 N -0.65 -14.57 2.87 -183.25 -0.53 -15.09 16
3 C 0.13 2.39 5.21 -4.04 -0.02 2.37 16
4 C -0.12 -2.01 5.01 -26.73 -0.13 -2.14 16
5 C -0.09 -1.09 2.25 -90.49 -0.20 -1.30 16
6 C -0.11 -1.26 5.38 -26.65 -0.14 -1.40 16
7 C 0.05 0.50 4.16 -3.83 -0.02 0.48 16
8 N -0.49 -4.93 4.70 -170.96 -0.80 -5.74 16
9 C 0.16 1.62 5.65 -83.61 -0.47 1.15 16
10 C -0.23 -2.14 8.88 -39.24 -0.35 -2.49 16
11 C 0.12 1.14 11.17 -17.61 -0.20 0.95 16
12 N -0.51 -5.49 10.36 -13.35 -0.14 -5.62 16
13 C 0.12 1.08 11.17 -17.61 -0.20 0.88 16
14 C -0.20 -1.82 9.25 -39.25 -0.36 -2.18 16
15 C 0.06 0.58 5.26 -3.84 -0.02 0.56 16
16 C -0.11 -1.21 5.08 -26.65 -0.14 -1.34 16
17 C 0.56 15.68 7.61 -12.98 -0.10 15.58 16
18 O -0.58 -18.41 14.60 5.21 0.08 -18.34 16
19 C -0.54 -15.19 8.74 -35.63 -0.31 -15.50 16
20 H 0.07 1.85 6.00 -52.49 -0.31 1.53 16
21 C 0.09 2.40 5.50 -17.36 -0.10 2.30 16
22 N -0.77 -22.84 11.83 55.55 0.66 -22.19 16
23 Si 0.91 19.95 29.56 -169.99 -5.02 14.92 16
24 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16
25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16
26 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16
27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
28 H 0.07 1.34 6.09 -51.93 -0.32 1.03 16
29 H 0.04 0.59 7.89 -51.93 -0.41 0.18 16
30 H 0.07 1.45 7.42 -51.93 -0.39 1.06 16
31 H 0.05 0.78 6.39 -51.93 -0.33 0.45 16
32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16
34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
37 H 0.05 0.48 7.76 -51.93 -0.40 0.08 16
38 H 0.08 0.73 7.04 -51.93 -0.37 0.36 16
39 H 0.14 1.09 5.97 -52.49 -0.31 0.77 16
40 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16
41 H 0.15 0.99 8.06 -52.48 -0.42 0.56 16
42 H 0.14 1.02 7.24 -52.49 -0.38 0.65 16
43 H 0.08 0.68 6.78 -51.93 -0.35 0.33 16
44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
46 H 0.08 0.80 6.70 -51.93 -0.35 0.45 16
47 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16
LS Contribution 370.57 15.07 5.58 5.58
Total: -1.00 -34.62 370.57 -9.60 -44.22
By element:
Atomic # 1 Polarization: 9.12 SS G_CDS: -7.28 Total: 1.84 kcal
Atomic # 6 Polarization: 2.55 SS G_CDS: -2.15 Total: 0.41 kcal
Atomic # 7 Polarization: -47.83 SS G_CDS: -0.81 Total: -48.64 kcal
Atomic # 8 Polarization: -18.41 SS G_CDS: 0.08 Total: -18.34 kcal
Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -34.62 -9.60 -44.22 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000185946298.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.046 kcal
(2) G-P(sol) polarization free energy of solvation -34.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.425 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.178 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds