Wall clock time and date at job start Tue Mar 31 2020 11:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46507 * 119.99815 * 2 1 4 4 C 1.52997 * 109.47024 * 270.00098 * 3 2 1 5 5 C 1.53000 * 109.46811 * 179.97438 * 4 3 2 6 6 C 1.53117 * 109.52114 * 175.00159 * 5 4 3 7 7 C 1.53044 * 109.27792 * 177.56078 * 6 5 4 8 8 N 1.46847 * 109.51335 * 300.82256 * 7 6 5 9 9 C 1.39168 * 111.00144 * 185.83469 * 8 7 6 10 10 C 1.39479 * 120.86228 * 359.72187 * 9 8 7 11 11 C 1.37895 * 119.06220 * 179.73127 * 10 9 8 12 12 N 1.31997 * 120.84669 * 0.55628 * 11 10 9 13 13 C 1.32001 * 121.90476 * 359.71624 * 12 11 10 14 14 C 1.37886 * 120.84622 * 359.97438 * 13 12 11 15 15 C 1.46830 * 111.21086 * 61.74856 * 8 7 6 16 16 C 1.53038 * 109.51757 * 298.25173 * 15 8 7 17 17 C 1.34773 * 120.00723 * 180.02562 * 2 1 3 18 18 O 1.21677 * 120.00613 * 180.02562 * 17 2 1 19 19 C 1.46383 * 119.99246 * 359.97438 * 17 2 1 20 20 H 1.07996 * 120.00325 * 0.02562 * 19 17 2 21 21 C 1.40054 * 119.99746 * 179.97438 * 19 17 2 22 22 N 1.30671 * 119.99607 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99917 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46993 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46659 * 120.00149 * 23 21 19 26 26 H 1.48499 * 109.46843 * 239.99829 * 23 21 19 27 27 H 1.09003 * 109.47562 * 90.00008 * 1 2 3 28 28 H 1.09005 * 109.47021 * 209.99714 * 1 2 3 29 29 H 1.09001 * 109.47604 * 329.99897 * 1 2 3 30 30 H 1.09000 * 109.46959 * 149.99901 * 3 2 1 31 31 H 1.08997 * 109.46901 * 30.00185 * 3 2 1 32 32 H 1.09000 * 109.47414 * 60.00081 * 4 3 2 33 33 H 1.08997 * 109.47353 * 299.99811 * 4 3 2 34 34 H 1.08998 * 109.52583 * 54.87570 * 5 4 3 35 35 H 1.09001 * 109.50874 * 57.62258 * 6 5 4 36 36 H 1.09002 * 109.53469 * 297.51379 * 6 5 4 37 37 H 1.09002 * 109.46396 * 60.83566 * 7 6 5 38 38 H 1.08994 * 109.46485 * 180.81491 * 7 6 5 39 39 H 1.07992 * 120.46967 * 359.97438 * 10 9 8 40 40 H 1.08006 * 119.58003 * 180.29734 * 11 10 9 41 41 H 1.08003 * 119.57355 * 180.02562 * 13 12 11 42 42 H 1.08002 * 120.46980 * 179.97438 * 14 13 12 43 43 H 1.08995 * 109.46742 * 178.23410 * 15 8 7 44 44 H 1.09004 * 109.45381 * 58.25744 * 15 8 7 45 45 H 1.08997 * 109.50308 * 299.23764 * 16 15 8 46 46 H 1.09000 * 109.50697 * 179.11489 * 16 15 8 47 47 H 0.97003 * 119.99531 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2168 3.0358 -1.4424 6 6 3.5815 3.4162 -2.8801 7 6 4.2920 4.7717 -2.8793 8 7 3.4085 5.7882 -2.2940 9 6 3.9712 7.0570 -2.3968 10 6 5.2204 7.2397 -2.9897 11 6 5.7404 8.5139 -3.0770 12 7 5.0769 9.5500 -2.5989 13 6 3.8950 9.4175 -2.0261 14 6 3.3030 8.1781 -1.9050 15 6 3.0829 5.4690 -0.8983 16 6 2.3364 4.1343 -0.8399 17 6 2.1389 -1.1671 -0.0005 18 8 3.3557 -1.1671 -0.0001 19 6 1.4070 -2.4348 -0.0005 20 1 0.3271 -2.4349 -0.0005 21 6 2.1073 -3.6477 -0.0016 22 7 3.4140 -3.6475 -0.0021 23 14 1.1734 -5.2655 -0.0023 24 1 -0.2866 -4.9941 -0.0022 25 1 1.5317 -6.0432 -1.2155 26 1 1.5327 -6.0449 1.2095 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 3.1498 1.1385 0.5138 31 1 1.6083 2.0284 0.5139 32 1 1.5000 1.8408 -1.9563 33 1 3.0415 0.9509 -1.9563 34 1 4.1265 2.9317 -0.8512 35 1 2.6742 3.4813 -3.4807 36 1 4.2431 2.6589 -3.3008 37 1 5.2063 4.7023 -2.2900 38 1 4.5402 5.0522 -3.9029 39 1 5.7709 6.3958 -3.3784 40 1 6.7049 8.6656 -3.5388 41 1 3.3849 10.2912 -1.6481 42 1 2.3359 8.0767 -1.4349 43 1 2.4532 6.2558 -0.4831 44 1 4.0030 5.3962 -0.3184 45 1 1.4096 4.2106 -1.4084 46 1 2.1086 3.8898 0.1976 47 1 3.8991 -4.4876 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185946298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:37 Heat of formation + Delta-G solvation = -23.723802 kcal Electronic energy + Delta-G solvation = -26117.889425 eV Core-core repulsion = 22492.233715 eV Total energy + Delta-G solvation = -3625.655710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.73055 -40.06101 -39.42554 -36.85903 -35.40973 -34.58479 -32.73724 -32.33356 -31.57017 -30.16801 -28.27269 -27.16723 -25.75673 -25.04749 -23.73710 -23.12377 -22.23194 -20.88377 -20.73077 -18.77835 -18.41121 -17.66911 -17.29663 -16.63977 -16.46387 -16.18740 -15.96151 -15.73310 -15.67375 -15.34025 -15.11090 -14.65445 -14.61384 -14.48926 -14.27315 -13.89960 -13.64351 -13.44155 -13.19985 -13.07816 -13.01973 -12.83764 -12.76735 -12.46916 -12.27121 -12.22489 -12.02855 -11.93491 -11.64943 -11.39524 -11.24425 -11.10219 -10.94349 -10.43964 -10.10613 -9.76653 -9.22058 -9.04164 -8.28405 -6.83377 0.23505 0.31549 1.38937 1.39247 1.56904 2.23801 2.46843 2.54476 2.91471 2.93620 3.58542 3.63514 3.67185 3.72890 3.78195 3.90591 4.06563 4.12981 4.21160 4.24394 4.33502 4.37268 4.45686 4.48651 4.56142 4.61066 4.65645 4.72079 4.77795 4.81980 4.86443 4.88243 4.92084 4.96657 5.04097 5.05536 5.12911 5.16458 5.23968 5.37216 5.38321 5.47330 5.66430 5.79711 5.88619 6.12590 6.16878 6.46531 6.88529 7.10495 7.44073 8.49169 8.68745 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037989 B = 0.002170 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.881962 B =12897.264568 C =13309.113866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.655 5.655 3 C 0.128 3.872 4 C -0.109 4.109 5 C -0.080 4.080 6 C -0.108 4.108 7 C 0.056 3.944 8 N -0.489 5.489 9 C 0.146 3.854 10 C -0.235 4.235 11 C 0.113 3.887 12 N -0.536 5.536 13 C 0.111 3.889 14 C -0.200 4.200 15 C 0.063 3.937 16 C -0.106 4.106 17 C 0.538 3.462 18 O -0.631 6.631 19 C -0.570 4.570 20 H 0.092 0.908 21 C 0.026 3.974 22 N -0.823 5.823 23 Si 0.995 3.005 24 H -0.245 1.245 25 H -0.270 1.270 26 H -0.269 1.269 27 H 0.041 0.959 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.034 0.966 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.147 0.853 40 H 0.173 0.827 41 H 0.178 0.822 42 H 0.152 0.848 43 H 0.100 0.900 44 H 0.041 0.959 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 21.523 -4.222 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.391 5.391 3 C 0.005 3.995 4 C -0.148 4.148 5 C -0.100 4.100 6 C -0.146 4.146 7 C -0.071 4.071 8 N -0.203 5.203 9 C 0.039 3.961 10 C -0.258 4.258 11 C -0.043 4.043 12 N -0.248 5.248 13 C -0.044 4.044 14 C -0.223 4.223 15 C -0.062 4.062 16 C -0.144 4.144 17 C 0.343 3.657 18 O -0.518 6.518 19 C -0.607 4.607 20 H 0.110 0.890 21 C -0.188 4.188 22 N -0.453 5.453 23 Si 0.814 3.186 24 H -0.168 1.168 25 H -0.195 1.195 26 H -0.194 1.194 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.165 0.835 40 H 0.190 0.810 41 H 0.195 0.805 42 H 0.169 0.831 43 H 0.118 0.882 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.802 22.186 -4.514 22.814 hybrid contribution 0.369 -1.920 0.273 1.974 sum -2.434 20.267 -4.241 20.848 Atomic orbital electron populations 1.21569 0.79504 1.02531 1.00723 1.47904 1.07051 1.05300 1.78829 1.21223 0.96302 0.85542 0.96470 1.21788 0.99916 0.95905 0.97240 1.21106 0.98280 0.93810 0.96781 1.21607 1.01168 0.95324 0.96521 1.22285 0.93663 0.90565 1.00544 1.58764 1.42090 1.00267 1.19167 1.19524 0.91221 0.91007 0.94376 1.22479 0.95732 1.00377 1.07186 1.22943 0.99581 0.87613 0.94197 1.67762 1.09714 1.34977 1.12318 1.23023 0.90772 0.97344 0.93289 1.22003 1.02616 0.92166 1.05491 1.22290 1.00013 0.98854 0.85020 1.21685 0.98695 0.91959 1.02050 1.18639 0.86632 0.84372 0.76028 1.90534 1.16281 1.87663 1.57356 1.21596 0.94893 0.89987 1.54180 0.88969 1.27012 0.95508 1.05012 0.91300 1.70210 1.09537 1.28709 1.36820 0.85016 0.79540 0.75589 0.78447 1.16751 1.19520 1.19427 0.94058 0.92044 0.90064 0.94724 0.88944 0.91382 0.95846 0.92512 0.90865 0.91581 0.93303 0.88962 0.83492 0.81041 0.80470 0.83056 0.88177 0.94040 0.90289 0.89860 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.44 10.19 127.77 1.30 4.74 16 2 N -0.65 -29.43 2.87 -851.90 -2.45 -31.88 16 3 C 0.13 4.77 5.21 86.38 0.45 5.22 16 4 C -0.11 -3.61 5.01 30.59 0.15 -3.46 16 5 C -0.08 -2.01 2.25 -10.71 -0.02 -2.03 16 6 C -0.11 -2.40 5.38 30.65 0.16 -2.24 16 7 C 0.06 1.04 4.16 86.33 0.36 1.40 16 8 N -0.49 -9.03 4.70 -694.80 -3.26 -12.30 16 9 C 0.15 2.68 5.65 38.58 0.22 2.90 16 10 C -0.23 -4.08 8.88 22.49 0.20 -3.88 16 11 C 0.11 1.98 11.17 84.59 0.94 2.92 16 12 N -0.54 -10.76 10.36 -196.15 -2.03 -12.79 16 13 C 0.11 1.83 11.17 84.58 0.94 2.77 16 14 C -0.20 -3.22 9.25 22.48 0.21 -3.02 16 15 C 0.06 1.08 5.26 86.33 0.45 1.53 16 16 C -0.11 -2.03 5.08 30.65 0.16 -1.87 16 17 C 0.54 31.34 7.61 86.36 0.66 32.00 16 18 O -0.63 -42.55 14.60 -4.27 -0.06 -42.61 16 19 C -0.57 -32.26 8.74 24.83 0.22 -32.05 16 20 H 0.09 4.66 6.00 -2.91 -0.02 4.64 16 21 C 0.03 1.48 5.50 85.31 0.47 1.95 16 22 N -0.82 -50.76 11.83 21.84 0.26 -50.50 16 23 Si 0.99 40.95 29.56 68.60 2.03 42.97 16 24 H -0.24 -9.21 7.11 99.48 0.71 -8.51 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 26 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 2.23 6.09 -2.38 -0.01 2.21 16 29 H 0.08 2.12 7.89 -2.39 -0.02 2.11 16 30 H 0.03 1.52 7.42 -2.39 -0.02 1.50 16 31 H 0.09 2.65 6.39 -2.39 -0.02 2.63 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 0.92 7.76 -2.39 -0.02 0.90 16 38 H 0.09 1.53 7.04 -2.39 -0.02 1.52 16 39 H 0.15 2.15 5.97 -2.91 -0.02 2.13 16 40 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.15 1.85 7.24 -2.91 -0.02 1.83 16 43 H 0.10 1.36 6.78 -2.39 -0.02 1.35 16 44 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.08 1.50 6.70 -2.39 -0.02 1.48 16 47 H 0.27 15.21 8.29 -92.71 -0.77 14.44 16 Total: -1.00 -79.23 370.57 2.31 -76.91 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.96 Total: 23.31 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 6.88 Total: 6.89 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -7.49 Total: -107.48 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.06 Total: -42.61 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Total: -79.23 2.31 -76.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185946298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.189 kcal (2) G-P(sol) polarization free energy of solvation -79.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds