Wall clock time and date at job start Tue Mar 31 2020 11:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 119.99814 * 2 1 4 4 C 1.50702 * 109.47571 * 270.00409 * 3 2 1 5 5 H 1.08002 * 119.99446 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00072 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 3 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.39677 * 119.99768 * 180.02562 * 2 1 3 13 13 C 1.38912 * 120.07110 * 179.72077 * 12 2 1 14 14 C 1.38099 * 119.92352 * 179.76915 * 13 12 2 15 15 C 1.38287 * 120.07653 * 0.50544 * 14 13 12 16 16 C 1.50700 * 119.92753 * 179.76939 * 15 14 13 17 17 N 1.46904 * 109.46788 * 269.98036 * 16 15 14 18 18 C 1.48566 * 110.99847 * 285.41654 * 17 16 15 19 19 C 1.54377 * 104.59365 * 200.96130 * 18 17 16 20 20 C 1.54264 * 105.05858 * 23.85458 * 19 18 17 21 21 C 1.48561 * 110.99719 * 170.00062 * 17 16 15 22 22 H 1.08998 * 110.40993 * 40.14316 * 21 17 16 23 23 C 1.50696 * 110.41015 * 277.81823 * 21 17 16 24 24 N 1.34776 * 120.00029 * 180.02562 * 23 21 17 25 25 O 1.21286 * 120.00291 * 359.97438 * 23 21 17 26 26 C 1.38285 * 120.14568 * 359.74732 * 15 14 13 27 27 C 1.38106 * 120.07596 * 0.02562 * 26 15 14 28 28 H 1.09003 * 109.47816 * 89.99931 * 1 2 3 29 29 H 1.09008 * 109.47270 * 209.99718 * 1 2 3 30 30 H 1.09000 * 109.47529 * 329.99746 * 1 2 3 31 31 H 1.09000 * 109.47378 * 150.00068 * 3 2 1 32 32 H 1.09001 * 109.47153 * 30.00189 * 3 2 1 33 33 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 34 34 H 1.08007 * 120.03840 * 0.02562 * 13 12 2 35 35 H 1.08002 * 119.96351 * 180.25872 * 14 13 12 36 36 H 1.08997 * 109.47149 * 29.97803 * 16 15 14 37 37 H 1.08995 * 109.46782 * 149.98377 * 16 15 14 38 38 H 1.08997 * 110.41219 * 319.74044 * 18 17 16 39 39 H 1.08999 * 110.40958 * 82.18398 * 18 17 16 40 40 H 1.08998 * 110.32665 * 264.96020 * 19 18 17 41 41 H 1.09000 * 110.41035 * 142.79299 * 19 18 17 42 42 H 1.09004 * 110.32036 * 241.10081 * 20 19 18 43 43 H 1.09002 * 110.40723 * 118.94148 * 20 19 18 44 44 H 0.96998 * 120.00286 * 359.97438 * 24 23 21 45 45 H 0.97001 * 120.00377 * 180.02562 * 24 23 21 46 46 H 1.08002 * 119.96217 * 180.02562 * 26 15 14 47 47 H 1.08004 * 120.03466 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0979 1.0959 -2.2417 6 6 3.1267 2.8776 -1.6726 7 7 3.3506 3.2545 -2.9126 8 14 3.7337 3.9288 -0.2528 9 1 2.6848 4.9121 0.1187 10 1 4.0332 3.0600 0.9137 11 1 4.9656 4.6499 -0.6620 12 6 2.1633 -1.2097 -0.0005 13 6 3.5524 -1.2115 -0.0064 14 6 4.2398 -2.4092 -0.0021 15 6 3.5469 -3.6059 -0.0025 16 6 4.3004 -4.9110 -0.0031 17 7 4.5447 -5.3347 -1.3883 18 6 3.3014 -5.8558 -2.0128 19 6 3.7925 -6.7271 -3.1887 20 6 5.2295 -7.1399 -2.8090 21 6 5.4859 -6.4832 -1.4356 22 1 5.2697 -7.1852 -0.6303 23 6 6.9101 -5.9998 -1.3417 24 7 7.9255 -6.8856 -1.3670 25 8 7.1427 -4.8134 -1.2445 26 6 2.1640 -3.6077 -0.0020 27 6 1.4704 -2.4135 -0.0016 28 1 -0.3635 0.0000 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 3.1498 1.1384 0.5138 32 1 1.6083 2.0283 0.5139 33 1 3.8312 4.0783 -3.0898 34 1 4.0943 -0.2771 -0.0101 35 1 5.3198 -2.4113 -0.0024 36 1 5.2530 -4.7808 0.5104 37 1 3.7114 -5.6707 0.5107 38 1 2.7421 -6.4606 -1.2991 39 1 2.6869 -5.0336 -2.3796 40 1 3.7964 -6.1489 -4.1127 41 1 3.1615 -7.6092 -3.2976 42 1 5.9387 -6.7642 -3.5466 43 1 5.3051 -8.2244 -2.7301 44 1 7.7396 -7.8344 -1.4451 45 1 8.8422 -6.5745 -1.3062 46 1 1.6258 -4.5441 -0.0019 47 1 0.3903 -2.4157 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245510305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:58 Heat of formation + Delta-G solvation = 8.910418 kcal Electronic energy + Delta-G solvation = -26581.777696 eV Core-core repulsion = 22957.537112 eV Total energy + Delta-G solvation = -3624.240584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27155 -38.94905 -37.81005 -35.78789 -33.86085 -32.79566 -32.24517 -30.46753 -29.63742 -29.11121 -28.23769 -25.90403 -24.23739 -22.94863 -21.98390 -21.61909 -20.73360 -20.11843 -19.48268 -17.71008 -16.98284 -16.87443 -16.58847 -16.01969 -15.25163 -15.09077 -14.73376 -14.53741 -14.27781 -13.93045 -13.75624 -13.49770 -13.30815 -13.01087 -12.90329 -12.79313 -12.55705 -12.33101 -11.93381 -11.70713 -11.52601 -11.50063 -11.37934 -11.24313 -10.93078 -10.80874 -10.60011 -10.57319 -10.24117 -9.91394 -9.88719 -9.80799 -9.51854 -8.82759 -8.59424 -8.42536 -8.19616 -6.33404 -6.07624 -4.07132 2.16872 2.25262 2.57730 3.22405 3.26396 3.34915 3.36030 4.03228 4.13053 4.36293 4.38592 4.45151 4.64024 4.76946 4.89584 5.00794 5.22334 5.24636 5.26173 5.36220 5.42193 5.54096 5.58601 5.62277 5.75458 5.76938 5.85867 5.91125 6.02940 6.04589 6.14818 6.31045 6.38784 6.45674 6.59102 6.64101 6.71931 6.79378 6.86597 6.97971 7.10160 7.16855 7.21477 7.41329 7.59733 7.63901 8.12008 8.20680 8.41625 8.58405 9.00474 9.52333 11.05632 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.003216 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.735908 B = 8705.047504 C = 9546.126661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.613 5.613 3 C 0.221 3.779 4 C -0.533 4.533 5 H 0.076 0.924 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.264 1.264 11 H -0.283 1.283 12 C 0.241 3.759 13 C -0.188 4.188 14 C -0.045 4.045 15 C -0.160 4.160 16 C 0.103 3.897 17 N -0.478 5.478 18 C 0.035 3.965 19 C -0.124 4.124 20 C -0.112 4.112 21 C 0.038 3.962 22 H 0.074 0.926 23 C 0.521 3.479 24 N -0.862 5.862 25 O -0.510 6.510 26 C -0.068 4.068 27 C -0.220 4.220 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.022 0.978 33 H 0.264 0.736 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.397 0.603 45 H 0.401 0.599 46 H 0.104 0.896 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 -25.107 5.011 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.319 5.319 3 C 0.100 3.900 4 C -0.572 4.572 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.201 1.201 10 H -0.189 1.189 11 H -0.209 1.209 12 C 0.135 3.865 13 C -0.210 4.210 14 C -0.064 4.064 15 C -0.162 4.162 16 C -0.024 4.024 17 N -0.202 5.202 18 C -0.092 4.092 19 C -0.162 4.162 20 C -0.150 4.150 21 C -0.074 4.074 22 H 0.091 0.909 23 C 0.305 3.695 24 N -0.428 5.428 25 O -0.382 6.382 26 C -0.087 4.087 27 C -0.243 4.243 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.225 0.775 45 H 0.231 0.769 46 H 0.122 0.878 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.362 -23.421 4.696 24.003 hybrid contribution 0.329 -0.290 0.888 0.991 sum 2.691 -23.710 5.585 24.507 Atomic orbital electron populations 1.21463 0.81152 1.00922 1.00721 1.46681 1.04314 1.03988 1.76908 1.19665 0.91987 0.80574 0.97806 1.21481 1.36842 1.07155 0.91674 0.90578 1.24899 0.95411 0.97288 0.95452 1.69904 1.41167 1.23607 1.18646 0.86910 0.78923 0.81064 0.83216 1.20128 1.18895 1.20911 1.17889 0.91440 0.85752 0.91398 1.20841 0.92546 0.98740 1.08897 1.20700 0.99120 0.91198 0.95416 1.19039 0.92911 0.93577 1.10713 1.20999 0.99240 0.94242 0.87873 1.65208 1.07752 1.29009 1.18209 1.23163 0.92399 0.98147 0.95530 1.22300 0.95079 0.99452 0.99368 1.22245 0.98379 0.99552 0.94870 1.22614 0.91889 0.93697 0.99197 0.90859 1.20399 0.87089 0.86379 0.75676 1.43881 1.09483 1.10406 1.78995 1.90809 1.84849 1.16129 1.46447 1.20484 0.93228 0.96407 0.98579 1.20477 0.98874 0.91285 1.13627 0.93822 0.92671 0.92175 0.95047 0.95987 0.92560 0.85460 0.86680 0.90545 0.94760 0.93861 0.89089 0.90547 0.91121 0.90593 0.90733 0.77507 0.76873 0.87771 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.23 59.85 0.61 2.40 16 2 N -0.61 -13.28 2.99 -181.00 -0.54 -13.82 16 3 C 0.22 5.39 4.02 -5.20 -0.02 5.37 16 4 C -0.53 -15.34 9.94 -34.44 -0.34 -15.69 16 5 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -27.80 13.96 55.43 0.77 -27.03 16 8 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.24 5.03 6.55 -83.79 -0.55 4.48 16 13 C -0.19 -4.02 9.20 -39.38 -0.36 -4.39 16 14 C -0.04 -0.86 9.69 -39.61 -0.38 -1.25 16 15 C -0.16 -2.66 5.20 -104.59 -0.54 -3.20 16 16 C 0.10 1.43 4.79 -4.97 -0.02 1.41 16 17 N -0.48 -6.36 4.59 -224.94 -1.03 -7.39 16 18 C 0.04 0.39 5.70 -2.18 -0.01 0.38 16 19 C -0.12 -1.08 7.00 -25.35 -0.18 -1.25 16 20 C -0.11 -0.87 6.53 -25.35 -0.17 -1.04 16 21 C 0.04 0.38 2.67 -67.23 -0.18 0.20 16 22 H 0.07 0.58 7.99 -51.93 -0.42 0.16 16 23 C 0.52 6.02 7.05 -10.99 -0.08 5.94 16 24 N -0.86 -5.79 8.86 31.22 0.28 -5.52 16 25 O -0.51 -8.69 16.75 5.55 0.09 -8.60 16 26 C -0.07 -1.08 8.92 -39.61 -0.35 -1.43 16 27 C -0.22 -3.90 9.21 -39.38 -0.36 -4.26 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.82 6.20 -51.92 -0.32 0.49 16 30 H 0.06 0.99 7.89 -51.93 -0.41 0.58 16 31 H 0.03 0.78 5.26 -51.93 -0.27 0.50 16 32 H 0.02 0.52 7.32 -51.93 -0.38 0.14 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.13 2.94 6.15 -52.48 -0.32 2.62 16 35 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.08 1.12 7.34 -51.93 -0.38 0.73 16 37 H 0.03 0.40 7.71 -51.93 -0.40 0.00 16 38 H 0.04 0.42 7.75 -51.93 -0.40 0.01 16 39 H 0.09 1.19 7.89 -51.93 -0.41 0.78 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.66 7.85 -51.93 -0.41 0.25 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.40 1.31 8.83 -40.82 -0.36 0.95 16 45 H 0.40 2.45 8.93 -40.82 -0.36 2.09 16 46 H 0.10 1.36 8.06 -52.49 -0.42 0.94 16 47 H 0.11 1.78 6.14 -52.48 -0.32 1.46 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -35.58 375.83 -9.77 -45.35 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.30 Total: 4.93 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -3.04 Total: -10.32 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.52 Total: -53.75 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.58 -9.77 -45.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245510305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.262 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds