Wall clock time and date at job start Tue Mar 31 2020 11:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 119.99814 * 2 1 4 4 C 1.50702 * 109.47571 * 270.00409 * 3 2 1 5 5 H 1.08002 * 119.99446 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00072 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 3 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.39677 * 119.99768 * 180.02562 * 2 1 3 13 13 C 1.38912 * 120.07110 * 179.72077 * 12 2 1 14 14 C 1.38099 * 119.92352 * 179.76915 * 13 12 2 15 15 C 1.38287 * 120.07653 * 0.50544 * 14 13 12 16 16 C 1.50700 * 119.92753 * 179.76939 * 15 14 13 17 17 N 1.46904 * 109.46788 * 269.98036 * 16 15 14 18 18 C 1.48566 * 110.99847 * 285.41654 * 17 16 15 19 19 C 1.54377 * 104.59365 * 200.96130 * 18 17 16 20 20 C 1.54264 * 105.05858 * 23.85458 * 19 18 17 21 21 C 1.48561 * 110.99719 * 170.00062 * 17 16 15 22 22 H 1.08998 * 110.40993 * 40.14316 * 21 17 16 23 23 C 1.50696 * 110.41015 * 277.81823 * 21 17 16 24 24 N 1.34776 * 120.00029 * 180.02562 * 23 21 17 25 25 O 1.21286 * 120.00291 * 359.97438 * 23 21 17 26 26 C 1.38285 * 120.14568 * 359.74732 * 15 14 13 27 27 C 1.38106 * 120.07596 * 0.02562 * 26 15 14 28 28 H 1.09003 * 109.47816 * 89.99931 * 1 2 3 29 29 H 1.09008 * 109.47270 * 209.99718 * 1 2 3 30 30 H 1.09000 * 109.47529 * 329.99746 * 1 2 3 31 31 H 1.09000 * 109.47378 * 150.00068 * 3 2 1 32 32 H 1.09001 * 109.47153 * 30.00189 * 3 2 1 33 33 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 34 34 H 1.08007 * 120.03840 * 0.02562 * 13 12 2 35 35 H 1.08002 * 119.96351 * 180.25872 * 14 13 12 36 36 H 1.08997 * 109.47149 * 29.97803 * 16 15 14 37 37 H 1.08995 * 109.46782 * 149.98377 * 16 15 14 38 38 H 1.08997 * 110.41219 * 319.74044 * 18 17 16 39 39 H 1.08999 * 110.40958 * 82.18398 * 18 17 16 40 40 H 1.08998 * 110.32665 * 264.96020 * 19 18 17 41 41 H 1.09000 * 110.41035 * 142.79299 * 19 18 17 42 42 H 1.09004 * 110.32036 * 241.10081 * 20 19 18 43 43 H 1.09002 * 110.40723 * 118.94148 * 20 19 18 44 44 H 0.96998 * 120.00286 * 359.97438 * 24 23 21 45 45 H 0.97001 * 120.00377 * 180.02562 * 24 23 21 46 46 H 1.08002 * 119.96217 * 180.02562 * 26 15 14 47 47 H 1.08004 * 120.03466 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0979 1.0959 -2.2417 6 6 3.1267 2.8776 -1.6726 7 7 3.3506 3.2545 -2.9126 8 14 3.7337 3.9288 -0.2528 9 1 2.6848 4.9121 0.1187 10 1 4.0332 3.0600 0.9137 11 1 4.9656 4.6499 -0.6620 12 6 2.1633 -1.2097 -0.0005 13 6 3.5524 -1.2115 -0.0064 14 6 4.2398 -2.4092 -0.0021 15 6 3.5469 -3.6059 -0.0025 16 6 4.3004 -4.9110 -0.0031 17 7 4.5447 -5.3347 -1.3883 18 6 3.3014 -5.8558 -2.0128 19 6 3.7925 -6.7271 -3.1887 20 6 5.2295 -7.1399 -2.8090 21 6 5.4859 -6.4832 -1.4356 22 1 5.2697 -7.1852 -0.6303 23 6 6.9101 -5.9998 -1.3417 24 7 7.9255 -6.8856 -1.3670 25 8 7.1427 -4.8134 -1.2445 26 6 2.1640 -3.6077 -0.0020 27 6 1.4704 -2.4135 -0.0016 28 1 -0.3635 0.0000 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 3.1498 1.1384 0.5138 32 1 1.6083 2.0283 0.5139 33 1 3.8312 4.0783 -3.0898 34 1 4.0943 -0.2771 -0.0101 35 1 5.3198 -2.4113 -0.0024 36 1 5.2530 -4.7808 0.5104 37 1 3.7114 -5.6707 0.5107 38 1 2.7421 -6.4606 -1.2991 39 1 2.6869 -5.0336 -2.3796 40 1 3.7964 -6.1489 -4.1127 41 1 3.1615 -7.6092 -3.2976 42 1 5.9387 -6.7642 -3.5466 43 1 5.3051 -8.2244 -2.7301 44 1 7.7396 -7.8344 -1.4451 45 1 8.8422 -6.5745 -1.3062 46 1 1.6258 -4.5441 -0.0019 47 1 0.3903 -2.4157 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245510305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:57 Heat of formation + Delta-G solvation = -18.404851 kcal Electronic energy + Delta-G solvation = -26582.962175 eV Core-core repulsion = 22957.537112 eV Total energy + Delta-G solvation = -3625.425063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18209 -40.35064 -38.79451 -37.28433 -34.86628 -34.62220 -33.45826 -32.00751 -30.83067 -30.09707 -29.93526 -27.24731 -25.74232 -24.05667 -23.40566 -23.01757 -21.71765 -20.96776 -20.90908 -19.10789 -18.45263 -18.19260 -17.68180 -16.96037 -16.80445 -16.26082 -16.04802 -15.82084 -15.43104 -15.26992 -15.05289 -14.92141 -14.67427 -14.40476 -14.28597 -13.99507 -13.87755 -13.54395 -13.35738 -13.13897 -12.98915 -12.73534 -12.59258 -12.42986 -12.23580 -12.12836 -12.09510 -11.86977 -11.75717 -11.50938 -11.41213 -10.83731 -10.82417 -10.57667 -10.41590 -9.68242 -9.30408 -8.35170 -7.92250 -6.40400 0.69117 0.80706 1.30281 1.34032 1.44261 1.72727 2.28877 2.47883 2.53920 2.98314 2.99528 3.41165 3.67626 3.73869 3.99653 4.07946 4.13880 4.20507 4.26547 4.34635 4.38335 4.40597 4.61158 4.64555 4.65675 4.68449 4.75760 4.80317 4.84313 4.90140 4.96345 5.00634 5.05686 5.08327 5.18837 5.27639 5.31832 5.44600 5.58243 5.61366 5.88575 5.92142 6.00979 6.07349 6.12941 6.22366 6.58441 6.59314 6.68272 6.86368 7.24859 7.47528 8.82661 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.003216 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.735908 B = 8705.047504 C = 9546.126661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.629 5.629 3 C 0.232 3.768 4 C -0.537 4.537 5 H 0.022 0.978 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.256 1.256 10 H -0.249 1.249 11 H -0.282 1.282 12 C 0.213 3.787 13 C -0.218 4.218 14 C -0.059 4.059 15 C -0.149 4.149 16 C 0.110 3.890 17 N -0.516 5.516 18 C 0.033 3.967 19 C -0.121 4.121 20 C -0.105 4.105 21 C 0.040 3.960 22 H 0.106 0.894 23 C 0.515 3.485 24 N -0.838 5.838 25 O -0.579 6.579 26 C -0.056 4.056 27 C -0.213 4.213 28 H 0.030 0.970 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.038 0.962 33 H 0.268 0.732 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.061 0.939 43 H 0.117 0.883 44 H 0.418 0.582 45 H 0.405 0.595 46 H 0.148 0.852 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 -28.823 6.911 29.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.337 5.337 3 C 0.109 3.891 4 C -0.576 4.576 5 H 0.040 0.960 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.771 3.229 9 H -0.180 1.180 10 H -0.173 1.173 11 H -0.207 1.207 12 C 0.108 3.892 13 C -0.241 4.241 14 C -0.079 4.079 15 C -0.152 4.152 16 C -0.017 4.017 17 N -0.241 5.241 18 C -0.094 4.094 19 C -0.159 4.159 20 C -0.143 4.143 21 C -0.071 4.071 22 H 0.124 0.876 23 C 0.300 3.700 24 N -0.403 5.403 25 O -0.457 6.457 26 C -0.075 4.075 27 C -0.235 4.235 28 H 0.049 0.951 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.135 0.865 44 H 0.249 0.751 45 H 0.236 0.764 46 H 0.165 0.835 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.339 -27.246 6.597 28.065 hybrid contribution 0.699 0.649 0.178 0.970 sum 2.038 -26.597 6.776 27.522 Atomic orbital electron populations 1.21639 0.78898 1.03247 1.00586 1.46675 1.05714 1.03184 1.78110 1.19345 0.92592 0.82531 0.94656 1.21680 1.36573 1.06614 0.92742 0.95981 1.25908 0.95416 0.98870 0.98613 1.70074 1.42586 1.24581 1.21451 0.85702 0.78614 0.79144 0.79474 1.18032 1.17253 1.20721 1.18155 0.91269 0.86743 0.92984 1.20741 0.93448 0.98256 1.11645 1.20721 0.98748 0.91914 0.96501 1.19432 0.93753 0.93979 1.08039 1.20899 0.98560 0.93326 0.88914 1.65030 1.09535 1.31760 1.17749 1.23184 0.91575 0.97858 0.96810 1.22306 0.96169 0.99918 0.97545 1.22290 0.97255 1.01803 0.92975 1.22727 0.89859 0.93000 1.01552 0.87612 1.20881 0.88650 0.85844 0.74642 1.43675 1.08904 1.11052 1.76656 1.90792 1.85861 1.19032 1.50033 1.20902 0.92836 0.97471 0.96279 1.20814 1.00187 0.90512 1.12002 0.95123 0.89236 0.90981 0.95558 0.94411 0.92320 0.88750 0.87866 0.92002 0.91517 0.91321 0.91877 0.92387 0.88076 0.92043 0.86469 0.75070 0.76389 0.83465 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.42 10.23 127.77 1.31 4.72 16 2 N -0.63 -27.78 2.99 -726.56 -2.17 -29.96 16 3 C 0.23 11.62 4.02 85.63 0.34 11.97 16 4 C -0.54 -32.67 9.94 25.60 0.25 -32.42 16 5 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 6 C 0.01 0.59 5.47 84.65 0.46 1.05 16 7 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 8 Si 0.95 45.22 27.47 68.60 1.88 47.10 16 9 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 10 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 12 C 0.21 9.07 6.55 38.21 0.25 9.32 16 13 C -0.22 -9.97 9.20 22.40 0.21 -9.76 16 14 C -0.06 -2.41 9.69 22.25 0.22 -2.19 16 15 C -0.15 -4.87 5.20 -19.84 -0.10 -4.98 16 16 C 0.11 2.85 4.79 85.56 0.41 3.26 16 17 N -0.52 -12.92 4.59 -865.56 -3.97 -16.89 16 18 C 0.03 0.64 5.70 86.45 0.49 1.14 16 19 C -0.12 -1.74 7.00 31.49 0.22 -1.52 16 20 C -0.11 -1.27 6.53 31.49 0.21 -1.06 16 21 C 0.04 0.69 2.67 44.31 0.12 0.81 16 22 H 0.11 1.15 7.99 -2.39 -0.02 1.13 16 23 C 0.52 11.36 7.05 87.66 0.62 11.98 16 24 N -0.84 -9.54 8.86 -173.53 -1.54 -11.07 16 25 O -0.58 -20.45 16.75 -3.05 -0.05 -20.50 16 26 C -0.06 -1.64 8.92 22.25 0.20 -1.44 16 27 C -0.21 -7.21 9.21 22.40 0.21 -7.00 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 2.43 6.20 -2.38 -0.01 2.41 16 30 H 0.07 2.28 7.89 -2.39 -0.02 2.26 16 31 H 0.03 1.35 5.26 -2.39 -0.01 1.34 16 32 H 0.04 1.77 7.32 -2.39 -0.02 1.75 16 33 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 34 H 0.09 4.80 6.15 -2.91 -0.02 4.78 16 35 H 0.10 4.30 8.06 -2.91 -0.02 4.27 16 36 H 0.06 1.78 7.34 -2.39 -0.02 1.76 16 37 H 0.07 1.28 7.71 -2.39 -0.02 1.26 16 38 H 0.07 0.98 7.75 -2.39 -0.02 0.96 16 39 H 0.06 1.56 7.89 -2.39 -0.02 1.54 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 0.94 7.85 -2.38 -0.02 0.92 16 43 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.42 1.30 8.83 -92.71 -0.82 0.48 16 45 H 0.40 4.40 8.93 -92.71 -0.83 3.57 16 46 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 47 H 0.14 3.93 6.14 -2.91 -0.02 3.91 16 Total: -1.00 -85.95 375.83 -0.85 -86.80 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.71 Total: 21.99 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 5.41 Total: -16.13 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -7.38 Total: -119.27 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.10 kcal Total: -85.95 -0.85 -86.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245510305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.399 kcal (2) G-P(sol) polarization free energy of solvation -85.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds