Wall clock time and date at job start Tue Mar 31 2020 11:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00071 * 2 1 4 4 C 1.50704 * 109.46853 * 270.00010 * 3 2 1 5 5 H 1.07993 * 120.00138 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99545 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00097 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 120.00037 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.47027 * 89.99865 * 8 6 4 10 10 H 1.48503 * 109.46989 * 209.99678 * 8 6 4 11 11 H 1.48493 * 109.47187 * 329.99623 * 8 6 4 12 12 C 1.39679 * 119.99946 * 180.02562 * 2 1 3 13 13 C 1.38908 * 120.07078 * 359.97438 * 12 2 1 14 14 C 1.38113 * 119.92265 * 180.02562 * 13 12 2 15 15 C 1.38289 * 120.07093 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.92151 * 179.97438 * 15 14 13 17 17 N 1.46905 * 109.47066 * 89.99963 * 16 15 14 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 15 19 19 H 1.08997 * 110.85529 * 325.69637 * 18 17 16 20 20 C 1.54627 * 110.97072 * 89.49101 * 18 17 16 21 21 C 1.51374 * 104.14864 * 93.33203 * 20 18 17 22 22 O 1.21281 * 124.93177 * 196.29456 * 21 20 18 23 23 N 1.34419 * 110.12627 * 16.25653 * 21 20 18 24 24 C 1.46504 * 124.35116 * 180.42294 * 23 21 20 25 25 C 1.46766 * 111.30051 * 0.40081 * 23 21 20 26 26 C 1.38284 * 120.15061 * 0.27277 * 15 14 13 27 27 C 1.38107 * 120.07495 * 359.45470 * 26 15 14 28 28 H 1.08993 * 109.46945 * 269.99983 * 1 2 3 29 29 H 1.09001 * 109.47121 * 30.00478 * 1 2 3 30 30 H 1.09004 * 109.47123 * 149.99458 * 1 2 3 31 31 H 1.08994 * 109.47172 * 29.99956 * 3 2 1 32 32 H 1.08999 * 109.46968 * 150.00055 * 3 2 1 33 33 H 0.97000 * 119.99766 * 180.02562 * 7 6 4 34 34 H 1.07999 * 120.04104 * 0.02562 * 13 12 2 35 35 H 1.07994 * 119.96170 * 179.97438 * 14 13 12 36 36 H 1.09001 * 109.47558 * 330.00127 * 16 15 14 37 37 H 1.08998 * 109.47216 * 209.99789 * 16 15 14 38 38 H 1.00901 * 110.99869 * 56.04737 * 17 16 15 39 39 H 1.09007 * 110.48478 * 211.99972 * 20 18 17 40 40 H 1.08997 * 110.48677 * 334.63690 * 20 18 17 41 41 H 1.08994 * 109.47345 * 269.97354 * 24 23 21 42 42 H 1.08997 * 109.46914 * 29.97752 * 24 23 21 43 43 H 1.09007 * 109.46711 * 149.97330 * 24 23 21 44 44 H 1.08991 * 110.25018 * 223.98423 * 25 23 21 45 45 H 1.09000 * 110.31728 * 102.02053 * 25 23 21 46 46 H 1.08001 * 119.96155 * 179.70462 * 26 15 14 47 47 H 1.08001 * 120.03692 * 180.27771 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.3448 3.2579 -2.9127 8 14 3.7330 3.9292 -0.2529 9 1 5.1065 3.5081 0.1230 10 1 3.7478 5.3560 -0.6644 11 1 2.8271 3.7592 0.9114 12 6 2.1634 -1.2097 -0.0005 13 6 1.4703 -2.4135 -0.0005 14 6 2.1640 -3.6078 -0.0005 15 6 3.5468 -3.6060 0.0000 16 6 4.3003 -4.9110 0.0006 17 7 4.5456 -5.3354 -1.3843 18 6 5.2793 -6.6075 -1.4229 19 1 5.9812 -6.6761 -0.5918 20 6 4.3052 -7.8084 -1.4251 21 6 4.1083 -8.1223 -2.8928 22 8 3.2126 -8.8051 -3.3428 23 7 5.0698 -7.5337 -3.6248 24 6 5.1714 -7.6257 -5.0834 25 6 6.0046 -6.7865 -2.7751 26 6 4.2398 -2.4093 0.0062 27 6 3.5524 -1.2114 0.0006 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.8216 4.0838 -3.0899 34 1 0.3903 -2.4156 -0.0005 35 1 1.6258 -4.5441 -0.0001 36 1 3.7110 -5.6706 0.5143 37 1 5.2525 -4.7806 0.5147 38 1 5.0348 -4.6197 -1.9005 39 1 4.7482 -8.6600 -0.9087 40 1 3.3576 -7.5317 -0.9630 41 1 5.7822 -8.4877 -5.3514 42 1 4.1751 -7.7394 -5.5105 43 1 5.6325 -6.7182 -5.4734 44 1 6.2225 -5.8147 -3.2178 45 1 6.9257 -7.3526 -2.6369 46 1 5.3198 -2.4114 0.0114 47 1 4.0943 -0.2772 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263685578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:16 Heat of formation + Delta-G solvation = 12.689560 kcal Electronic energy + Delta-G solvation = -25872.887940 eV Core-core repulsion = 22248.811232 eV Total energy + Delta-G solvation = -3624.076708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.58979 -39.13094 -37.26057 -36.12707 -34.78789 -32.70919 -31.87783 -30.58271 -29.54850 -28.34760 -27.75804 -26.54773 -25.51752 -23.85749 -22.16718 -21.44985 -21.32061 -19.87043 -19.52127 -16.99035 -16.96799 -16.90043 -16.65555 -15.80941 -15.58382 -15.08578 -14.70579 -14.65705 -14.30065 -13.93564 -13.75953 -13.66492 -13.41339 -13.15517 -12.99375 -12.96136 -12.75016 -12.52430 -12.44205 -12.10027 -11.95138 -11.77950 -11.64698 -11.52734 -11.46246 -11.02089 -10.79201 -10.63866 -10.28164 -10.10942 -9.96821 -9.62263 -9.01880 -8.90747 -8.69228 -8.56418 -8.35068 -6.45912 -6.17656 -4.17861 2.02177 2.11500 2.49059 2.83790 3.18278 3.26525 3.27187 3.88792 4.02526 4.07417 4.15853 4.28976 4.52606 4.64862 4.98263 5.01740 5.10132 5.12563 5.14280 5.16838 5.26319 5.32209 5.36600 5.49808 5.50242 5.53986 5.67075 5.68884 5.75603 5.92146 5.98401 6.19809 6.26684 6.27486 6.34050 6.50866 6.69542 6.71369 6.81704 6.90180 6.99641 7.02284 7.13616 7.27404 7.47813 7.50399 8.00860 8.04189 8.30014 8.47992 8.90190 9.42045 10.95348 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.002627 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.854810 B =10656.246875 C =11229.706783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.611 5.611 3 C 0.220 3.780 4 C -0.535 4.535 5 H 0.076 0.924 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.243 3.757 13 C -0.219 4.219 14 C -0.049 4.049 15 C -0.174 4.174 16 C 0.116 3.884 17 N -0.676 5.676 18 C 0.071 3.929 19 H 0.074 0.926 20 C -0.145 4.145 21 C 0.526 3.474 22 O -0.538 6.538 23 N -0.621 5.621 24 C 0.097 3.903 25 C 0.104 3.896 26 C -0.066 4.066 27 C -0.189 4.189 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.349 0.651 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 -18.891 5.136 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.316 5.316 3 C 0.099 3.901 4 C -0.574 4.574 5 H 0.095 0.905 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.136 3.864 13 C -0.242 4.242 14 C -0.068 4.068 15 C -0.176 4.176 16 C -0.011 4.011 17 N -0.310 5.310 18 C -0.039 4.039 19 H 0.092 0.908 20 C -0.186 4.186 21 C 0.314 3.686 22 O -0.415 6.415 23 N -0.356 5.356 24 C -0.045 4.045 25 C -0.020 4.020 26 C -0.085 4.085 27 C -0.211 4.211 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.169 0.831 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.127 0.873 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.938 -19.170 4.622 20.328 hybrid contribution 1.301 1.209 0.625 1.883 sum 6.239 -17.961 5.247 19.724 Atomic orbital electron populations 1.21505 0.80953 1.02411 0.99739 1.46734 1.04467 1.03947 1.76478 1.19661 0.91899 0.80715 0.97810 1.21481 1.36985 1.07265 0.91622 0.90546 1.24904 0.95427 0.97226 0.95464 1.69905 1.41198 1.23485 1.18650 0.86913 0.79889 0.80233 0.83070 1.19924 1.20940 1.19016 1.17930 0.91454 0.85895 0.91105 1.20590 0.99185 0.91327 1.13067 1.20521 0.93246 0.96594 0.96479 1.19145 0.93661 0.93243 1.11593 1.20704 0.97744 0.94565 0.88132 1.60551 1.51530 1.04150 1.14771 1.22473 0.93910 0.91300 0.96265 0.90788 1.22440 1.03038 0.98498 0.94648 1.20854 0.80390 0.77992 0.89318 1.90712 1.33675 1.39546 1.77568 1.48064 1.28761 1.51775 1.06978 1.21531 1.03031 1.01608 0.78368 1.22300 0.92153 0.97163 0.90400 1.20640 0.98444 0.91671 0.97768 1.20781 0.92639 0.98604 1.09078 0.94483 0.91244 0.92317 0.95426 0.95511 0.92493 0.86737 0.87153 0.90905 0.94858 0.83088 0.87990 0.87252 0.92816 0.90664 0.90973 0.89912 0.90580 0.87332 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.66 10.19 59.85 0.61 2.27 16 2 N -0.61 -12.55 2.99 -181.00 -0.54 -13.09 16 3 C 0.22 5.09 3.98 -5.19 -0.02 5.07 16 4 C -0.53 -14.66 9.94 -34.44 -0.34 -15.01 16 5 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 7 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 8 Si 0.87 20.37 27.47 -169.99 -4.67 15.70 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 12 C 0.24 4.71 6.55 -83.79 -0.55 4.16 16 13 C -0.22 -3.69 9.21 -39.38 -0.36 -4.05 16 14 C -0.05 -0.74 9.69 -39.61 -0.38 -1.12 16 15 C -0.17 -2.43 5.39 -104.59 -0.56 -3.00 16 16 C 0.12 1.22 5.69 -4.97 -0.03 1.19 16 17 N -0.68 -6.77 6.34 -106.27 -0.67 -7.44 16 18 C 0.07 0.53 3.45 -66.08 -0.23 0.30 16 19 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 20 C -0.15 -1.29 6.59 -26.70 -0.18 -1.46 16 21 C 0.53 6.45 8.02 -10.81 -0.09 6.37 16 22 O -0.54 -8.87 17.59 5.56 0.10 -8.77 16 23 N -0.62 -6.06 3.33 -180.25 -0.60 -6.66 16 24 C 0.10 0.80 10.96 59.85 0.66 1.46 16 25 C 0.10 0.71 7.04 -3.12 -0.02 0.69 16 26 C -0.07 -1.02 9.69 -39.61 -0.38 -1.41 16 27 C -0.19 -3.58 9.21 -39.38 -0.36 -3.94 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.06 0.90 6.20 -51.93 -0.32 0.58 16 31 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 32 H 0.03 0.61 5.62 -51.93 -0.29 0.32 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.11 1.76 6.14 -52.49 -0.32 1.44 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.03 0.31 8.03 -51.93 -0.42 -0.11 16 38 H 0.35 3.53 8.13 -39.29 -0.32 3.21 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.11 1.08 8.09 -51.93 -0.42 0.66 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.73 7.93 -51.93 -0.41 0.32 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.53 7.61 -51.93 -0.39 0.13 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.13 2.61 6.14 -52.49 -0.32 2.29 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -33.41 381.75 -9.59 -43.00 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.39 Total: 3.95 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.34 Total: -6.55 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -1.04 Total: -53.08 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.10 Total: -8.77 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.41 -9.59 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263685578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.691 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds