Wall clock time and date at job start Tue Mar 31 2020 11:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00071 * 2 1 4 4 C 1.50704 * 109.46853 * 270.00010 * 3 2 1 5 5 H 1.07993 * 120.00138 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99545 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00097 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 120.00037 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.47027 * 89.99865 * 8 6 4 10 10 H 1.48503 * 109.46989 * 209.99678 * 8 6 4 11 11 H 1.48493 * 109.47187 * 329.99623 * 8 6 4 12 12 C 1.39679 * 119.99946 * 180.02562 * 2 1 3 13 13 C 1.38908 * 120.07078 * 359.97438 * 12 2 1 14 14 C 1.38113 * 119.92265 * 180.02562 * 13 12 2 15 15 C 1.38289 * 120.07093 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.92151 * 179.97438 * 15 14 13 17 17 N 1.46905 * 109.47066 * 89.99963 * 16 15 14 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 15 19 19 H 1.08997 * 110.85529 * 325.69637 * 18 17 16 20 20 C 1.54627 * 110.97072 * 89.49101 * 18 17 16 21 21 C 1.51374 * 104.14864 * 93.33203 * 20 18 17 22 22 O 1.21281 * 124.93177 * 196.29456 * 21 20 18 23 23 N 1.34419 * 110.12627 * 16.25653 * 21 20 18 24 24 C 1.46504 * 124.35116 * 180.42294 * 23 21 20 25 25 C 1.46766 * 111.30051 * 0.40081 * 23 21 20 26 26 C 1.38284 * 120.15061 * 0.27277 * 15 14 13 27 27 C 1.38107 * 120.07495 * 359.45470 * 26 15 14 28 28 H 1.08993 * 109.46945 * 269.99983 * 1 2 3 29 29 H 1.09001 * 109.47121 * 30.00478 * 1 2 3 30 30 H 1.09004 * 109.47123 * 149.99458 * 1 2 3 31 31 H 1.08994 * 109.47172 * 29.99956 * 3 2 1 32 32 H 1.08999 * 109.46968 * 150.00055 * 3 2 1 33 33 H 0.97000 * 119.99766 * 180.02562 * 7 6 4 34 34 H 1.07999 * 120.04104 * 0.02562 * 13 12 2 35 35 H 1.07994 * 119.96170 * 179.97438 * 14 13 12 36 36 H 1.09001 * 109.47558 * 330.00127 * 16 15 14 37 37 H 1.08998 * 109.47216 * 209.99789 * 16 15 14 38 38 H 1.00901 * 110.99869 * 56.04737 * 17 16 15 39 39 H 1.09007 * 110.48478 * 211.99972 * 20 18 17 40 40 H 1.08997 * 110.48677 * 334.63690 * 20 18 17 41 41 H 1.08994 * 109.47345 * 269.97354 * 24 23 21 42 42 H 1.08997 * 109.46914 * 29.97752 * 24 23 21 43 43 H 1.09007 * 109.46711 * 149.97330 * 24 23 21 44 44 H 1.08991 * 110.25018 * 223.98423 * 25 23 21 45 45 H 1.09000 * 110.31728 * 102.02053 * 25 23 21 46 46 H 1.08001 * 119.96155 * 179.70462 * 26 15 14 47 47 H 1.08001 * 120.03692 * 180.27771 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.3448 3.2579 -2.9127 8 14 3.7330 3.9292 -0.2529 9 1 5.1065 3.5081 0.1230 10 1 3.7478 5.3560 -0.6644 11 1 2.8271 3.7592 0.9114 12 6 2.1634 -1.2097 -0.0005 13 6 1.4703 -2.4135 -0.0005 14 6 2.1640 -3.6078 -0.0005 15 6 3.5468 -3.6060 0.0000 16 6 4.3003 -4.9110 0.0006 17 7 4.5456 -5.3354 -1.3843 18 6 5.2793 -6.6075 -1.4229 19 1 5.9812 -6.6761 -0.5918 20 6 4.3052 -7.8084 -1.4251 21 6 4.1083 -8.1223 -2.8928 22 8 3.2126 -8.8051 -3.3428 23 7 5.0698 -7.5337 -3.6248 24 6 5.1714 -7.6257 -5.0834 25 6 6.0046 -6.7865 -2.7751 26 6 4.2398 -2.4093 0.0062 27 6 3.5524 -1.2114 0.0006 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.8216 4.0838 -3.0899 34 1 0.3903 -2.4156 -0.0005 35 1 1.6258 -4.5441 -0.0001 36 1 3.7110 -5.6706 0.5143 37 1 5.2525 -4.7806 0.5147 38 1 5.0348 -4.6197 -1.9005 39 1 4.7482 -8.6600 -0.9087 40 1 3.3576 -7.5317 -0.9630 41 1 5.7822 -8.4877 -5.3514 42 1 4.1751 -7.7394 -5.5105 43 1 5.6325 -6.7182 -5.4734 44 1 6.2225 -5.8147 -3.2178 45 1 6.9257 -7.3526 -2.6369 46 1 5.3198 -2.4114 0.0114 47 1 4.0943 -0.2772 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263685578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:15 Heat of formation + Delta-G solvation = -10.182177 kcal Electronic energy + Delta-G solvation = -25873.879733 eV Core-core repulsion = 22248.811232 eV Total energy + Delta-G solvation = -3625.068501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.36814 -40.43002 -38.23829 -37.36967 -35.77131 -34.68851 -32.80061 -31.95430 -30.76771 -29.95827 -28.47600 -27.42709 -26.69512 -25.24217 -23.53123 -22.86882 -21.98408 -21.04081 -20.51950 -19.07991 -18.19587 -17.65555 -17.57747 -16.93585 -16.59451 -16.24215 -16.12827 -15.74597 -15.43167 -15.20224 -14.94720 -14.72927 -14.51252 -14.36582 -14.33938 -14.20859 -13.80025 -13.46172 -13.34760 -13.23898 -13.14037 -13.03328 -12.85191 -12.68256 -12.56094 -12.40378 -12.13713 -12.05114 -11.86380 -11.74008 -11.43742 -10.89331 -10.82286 -10.40912 -9.70968 -9.65359 -9.26892 -8.33394 -7.90676 -6.39032 0.72259 0.84595 1.34488 1.35681 1.46398 1.61364 2.16119 2.30615 2.54601 2.99036 3.00608 3.43343 3.44650 3.50934 4.05570 4.08415 4.18869 4.24376 4.37406 4.39283 4.43288 4.51294 4.57712 4.61805 4.66064 4.70445 4.73233 4.75000 4.80705 4.83093 4.84323 4.89241 4.91824 5.00618 5.07257 5.12146 5.32010 5.45505 5.57916 5.61548 5.67512 5.93196 6.10179 6.13855 6.15454 6.26464 6.48762 6.60025 6.70011 6.87626 7.18760 7.26657 8.84098 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.002627 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.854810 B =10656.246875 C =11229.706783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.630 5.630 3 C 0.232 3.768 4 C -0.537 4.537 5 H 0.023 0.977 6 C 0.012 3.988 7 N -0.946 5.946 8 Si 0.947 3.053 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.244 1.244 12 C 0.210 3.790 13 C -0.221 4.221 14 C -0.053 4.053 15 C -0.158 4.158 16 C 0.122 3.878 17 N -0.694 5.694 18 C 0.079 3.921 19 H 0.108 0.892 20 C -0.140 4.140 21 C 0.509 3.491 22 O -0.596 6.596 23 N -0.622 5.622 24 C 0.091 3.909 25 C 0.101 3.899 26 C -0.064 4.064 27 C -0.218 4.218 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.268 0.732 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.348 0.652 39 H 0.128 0.872 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.133 0.867 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.941 -20.320 7.584 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.338 5.338 3 C 0.110 3.890 4 C -0.575 4.575 5 H 0.041 0.959 6 C -0.186 4.186 7 N -0.586 5.586 8 Si 0.770 3.230 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.168 1.168 12 C 0.106 3.894 13 C -0.244 4.244 14 C -0.072 4.072 15 C -0.160 4.160 16 C -0.006 4.006 17 N -0.328 5.328 18 C -0.031 4.031 19 H 0.125 0.875 20 C -0.180 4.180 21 C 0.298 3.702 22 O -0.478 6.478 23 N -0.355 5.355 24 C -0.051 4.051 25 C -0.021 4.021 26 C -0.084 4.084 27 C -0.240 4.240 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.168 0.832 39 H 0.146 0.854 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.124 0.876 46 H 0.151 0.849 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.852 -20.625 7.085 22.859 hybrid contribution 0.744 1.479 -0.262 1.677 sum 7.597 -19.146 6.822 21.699 Atomic orbital electron populations 1.21615 0.79383 1.02338 1.01257 1.46703 1.05533 1.03431 1.78124 1.19334 0.92619 0.82362 0.94719 1.21662 1.36527 1.06716 0.92643 0.95894 1.25880 0.95483 0.98722 0.98504 1.70073 1.42702 1.24412 1.21438 0.85720 0.79943 0.77732 0.79624 1.18735 1.20672 1.16768 1.18225 0.91901 0.86274 0.93009 1.20808 0.99947 0.91099 1.12563 1.20886 0.94020 0.96756 0.95567 1.19576 0.93610 0.94527 1.08317 1.20691 0.98434 0.92605 0.88859 1.60460 1.52829 1.05129 1.14390 1.22536 0.93683 0.89201 0.97684 0.87482 1.22476 1.03225 1.00123 0.92191 1.21566 0.80011 0.77450 0.91123 1.90671 1.36031 1.42231 1.78820 1.48300 1.28581 1.50956 1.07663 1.21637 1.02180 1.03287 0.77986 1.22556 0.92360 0.97678 0.89540 1.20902 0.99715 0.90987 0.96753 1.20820 0.92869 0.99018 1.11315 0.91996 0.92649 0.91093 0.94789 0.95070 0.92306 0.85625 0.84876 0.89692 0.92677 0.83183 0.85387 0.88307 0.91394 0.92933 0.88985 0.89171 0.87574 0.84907 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.30 10.19 127.77 1.30 4.61 16 2 N -0.63 -26.37 2.99 -726.56 -2.17 -28.54 16 3 C 0.23 10.92 3.98 85.63 0.34 11.27 16 4 C -0.54 -30.74 9.94 25.60 0.25 -30.48 16 5 H 0.02 1.51 8.06 -2.91 -0.02 1.48 16 6 C 0.01 0.69 5.47 84.65 0.46 1.15 16 7 N -0.95 -58.56 13.96 21.45 0.30 -58.27 16 8 Si 0.95 42.32 27.47 68.60 1.88 44.21 16 9 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 12 C 0.21 8.23 6.55 38.21 0.25 8.48 16 13 C -0.22 -7.28 9.21 22.40 0.21 -7.07 16 14 C -0.05 -1.48 9.69 22.25 0.22 -1.26 16 15 C -0.16 -4.00 5.39 -19.84 -0.11 -4.10 16 16 C 0.12 2.04 5.69 85.55 0.49 2.53 16 17 N -0.69 -11.47 6.34 -490.11 -3.11 -14.58 16 18 C 0.08 0.85 3.45 45.97 0.16 1.01 16 19 H 0.11 0.57 7.87 -2.39 -0.02 0.55 16 20 C -0.14 -2.08 6.59 30.62 0.20 -1.88 16 21 C 0.51 11.99 8.02 87.93 0.71 12.70 16 22 O -0.60 -20.10 17.59 -3.03 -0.05 -20.15 16 23 N -0.62 -11.02 3.33 -842.77 -2.81 -13.83 16 24 C 0.09 1.42 10.96 127.77 1.40 2.82 16 25 C 0.10 1.02 7.04 86.83 0.61 1.63 16 26 C -0.06 -1.90 9.69 22.25 0.22 -1.68 16 27 C -0.22 -8.34 9.21 22.40 0.21 -8.13 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.99 8.07 -2.39 -0.02 1.97 16 30 H 0.07 2.18 6.20 -2.38 -0.01 2.16 16 31 H 0.03 1.55 7.13 -2.39 -0.02 1.53 16 32 H 0.03 1.44 5.62 -2.39 -0.01 1.43 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.13 3.73 6.14 -2.91 -0.02 3.71 16 35 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 37 H 0.06 0.73 8.03 -2.39 -0.02 0.71 16 38 H 0.35 5.94 8.13 -89.69 -0.73 5.21 16 39 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 1.06 7.93 -2.39 -0.02 1.04 16 43 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.09 0.83 7.61 -2.39 -0.02 0.81 16 45 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 47 H 0.10 4.33 6.14 -2.91 -0.02 4.31 16 Total: -1.00 -78.21 381.75 1.14 -77.07 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.18 Total: 22.51 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 6.91 Total: -8.43 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -7.79 Total: -115.21 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.05 Total: -20.15 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.21 kcal Total: -78.21 1.14 -77.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263685578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.888 kcal (2) G-P(sol) polarization free energy of solvation -78.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds