Wall clock time and date at job start Tue Mar 31 2020 11:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 120.00236 * 2 1 4 4 C 1.50696 * 109.46934 * 270.00143 * 3 2 1 5 5 H 1.08001 * 120.00501 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99736 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00063 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99923 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47239 * 89.99523 * 8 6 4 10 10 H 1.48499 * 109.46903 * 209.99799 * 8 6 4 11 11 H 1.48501 * 109.47015 * 329.99170 * 8 6 4 12 12 C 1.39682 * 119.99815 * 180.02562 * 2 1 3 13 13 C 1.38908 * 120.07043 * 359.97438 * 12 2 1 14 14 C 1.38113 * 119.92265 * 179.97438 * 13 12 2 15 15 C 1.38289 * 120.07093 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.92151 * 179.97438 * 15 14 13 17 17 N 1.46905 * 109.47066 * 89.99963 * 16 15 14 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 15 19 19 H 1.08996 * 110.85884 * 34.29507 * 18 17 16 20 20 C 1.54634 * 110.96718 * 270.50806 * 18 17 16 21 21 C 1.51282 * 104.19308 * 266.67824 * 20 18 17 22 22 O 1.21282 * 124.93733 * 163.70892 * 21 20 18 23 23 N 1.34413 * 110.11491 * 343.75097 * 21 20 18 24 24 C 1.46508 * 124.34385 * 179.58635 * 23 21 20 25 25 C 1.46851 * 111.31719 * 359.58493 * 23 21 20 26 26 C 1.38284 * 120.15061 * 0.27277 * 15 14 13 27 27 C 1.38107 * 120.07495 * 359.45470 * 26 15 14 28 28 H 1.09006 * 109.47190 * 270.00125 * 1 2 3 29 29 H 1.09005 * 109.47273 * 29.99773 * 1 2 3 30 30 H 1.08999 * 109.47518 * 150.00002 * 1 2 3 31 31 H 1.08992 * 109.47000 * 30.00031 * 3 2 1 32 32 H 1.08998 * 109.46696 * 150.00317 * 3 2 1 33 33 H 0.96998 * 120.00344 * 180.02562 * 7 6 4 34 34 H 1.07999 * 120.04104 * 359.95514 * 13 12 2 35 35 H 1.07993 * 119.96306 * 180.02562 * 14 13 12 36 36 H 1.09001 * 109.47558 * 330.00127 * 16 15 14 37 37 H 1.08998 * 109.47216 * 209.99789 * 16 15 14 38 38 H 1.00901 * 110.99869 * 56.04737 * 17 16 15 39 39 H 1.08994 * 110.48410 * 25.35894 * 20 18 17 40 40 H 1.09005 * 110.48287 * 147.86916 * 20 18 17 41 41 H 1.08998 * 109.47402 * 359.97189 * 24 23 21 42 42 H 1.09006 * 109.46706 * 119.97288 * 24 23 21 43 43 H 1.09001 * 109.46886 * 239.97412 * 24 23 21 44 44 H 1.09002 * 110.26134 * 258.04815 * 25 23 21 45 45 H 1.08997 * 110.28769 * 136.01054 * 25 23 21 46 46 H 1.08001 * 119.96155 * 179.70462 * 26 15 14 47 47 H 1.08001 * 120.03692 * 180.27771 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6731 8 14 3.4377 3.4170 -3.4339 9 1 2.3078 4.2606 -3.8998 10 1 4.6983 4.1993 -3.4968 11 1 3.5539 2.2201 -4.3051 12 6 2.1633 -1.2097 -0.0005 13 6 1.4702 -2.4135 -0.0005 14 6 2.1638 -3.6078 -0.0016 15 6 3.5467 -3.6060 -0.0021 16 6 4.3001 -4.9111 -0.0027 17 7 4.5444 -5.3349 -1.3880 18 6 5.2780 -6.6070 -1.4277 19 1 4.9861 -7.2495 -0.5970 20 6 6.8053 -6.3651 -1.4300 21 6 7.1763 -6.3503 -2.8965 22 8 8.2161 -5.9165 -3.3456 23 7 6.1856 -6.8869 -3.6294 24 6 6.2152 -7.0195 -5.0882 25 6 5.0696 -7.3233 -2.7805 26 6 4.2397 -2.4094 0.0041 27 6 3.5524 -1.2115 -0.0005 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 4.0312 4.4434 -0.8503 34 1 0.3902 -2.4156 0.0006 35 1 1.6256 -4.5441 -0.0020 36 1 3.7112 -5.6709 0.5111 37 1 5.2527 -4.7810 0.5107 38 1 5.0332 -4.6190 -1.9043 39 1 7.0404 -5.4067 -0.9672 40 1 7.3204 -7.1743 -0.9122 41 1 7.1538 -6.6185 -5.4706 42 1 6.1325 -8.0721 -5.3591 43 1 5.3811 -6.4664 -5.5203 44 1 5.0999 -8.4043 -2.6434 45 1 4.1191 -7.0249 -3.2227 46 1 5.3197 -2.4116 0.0085 47 1 4.0943 -0.2773 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263685581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:21 Heat of formation + Delta-G solvation = 6.405039 kcal Electronic energy + Delta-G solvation = -25917.103414 eV Core-core repulsion = 22292.754189 eV Total energy + Delta-G solvation = -3624.349226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70429 -39.05306 -37.26252 -36.06959 -34.79891 -32.77432 -31.82420 -30.46748 -29.32025 -27.84456 -27.72885 -26.55502 -25.45267 -23.94670 -22.21343 -21.61214 -21.39804 -19.81958 -19.56841 -17.09448 -16.81245 -16.63917 -16.46634 -15.93826 -15.33913 -14.98454 -14.79042 -14.62887 -14.22779 -14.07552 -13.78396 -13.72287 -13.40838 -13.06799 -12.90102 -12.73627 -12.67719 -12.50758 -12.24597 -12.10287 -12.01828 -11.75415 -11.63839 -11.42399 -11.26169 -10.94770 -10.74854 -10.69839 -10.28619 -10.04765 -9.91138 -9.77400 -8.99094 -8.89613 -8.56968 -8.51994 -8.29429 -6.49386 -6.03618 -4.18957 2.08304 2.17270 2.37300 2.79570 3.25745 3.32917 3.37556 3.89048 4.05318 4.13126 4.27068 4.40222 4.58865 4.59895 4.87110 5.03401 5.05724 5.20191 5.20833 5.23405 5.28437 5.31576 5.43048 5.47572 5.52608 5.58049 5.60581 5.70594 5.80310 5.98835 6.05650 6.23074 6.25951 6.36219 6.40618 6.61587 6.79516 6.84982 6.94426 7.01355 7.14267 7.18592 7.25846 7.34342 7.57394 7.79625 7.95073 8.13666 8.24291 8.46131 8.90095 9.48107 10.94210 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.002988 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.897317 B = 9367.725107 C =10768.526098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.249 3.751 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.243 3.757 13 C -0.224 4.224 14 C -0.050 4.050 15 C -0.178 4.178 16 C 0.116 3.884 17 N -0.674 5.674 18 C 0.076 3.924 19 H 0.107 0.893 20 C -0.189 4.189 21 C 0.516 3.484 22 O -0.536 6.536 23 N -0.622 5.622 24 C 0.093 3.907 25 C 0.108 3.892 26 C -0.066 4.066 27 C -0.188 4.188 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.347 0.653 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -22.688 0.096 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.320 5.320 3 C 0.129 3.871 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.136 3.864 13 C -0.247 4.247 14 C -0.069 4.069 15 C -0.181 4.181 16 C -0.012 4.012 17 N -0.304 5.304 18 C -0.036 4.036 19 H 0.125 0.875 20 C -0.231 4.231 21 C 0.304 3.696 22 O -0.413 6.413 23 N -0.357 5.357 24 C -0.049 4.049 25 C -0.015 4.015 26 C -0.086 4.086 27 C -0.210 4.210 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.167 0.833 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.111 0.889 46 H 0.125 0.875 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.156 -22.350 -0.251 22.352 hybrid contribution 0.993 0.801 -0.856 1.536 sum 0.837 -21.549 -1.107 21.594 Atomic orbital electron populations 1.21480 0.81468 1.01964 0.99705 1.47125 1.04424 1.04654 1.75836 1.19289 0.92073 0.78745 0.97003 1.21577 1.36433 1.06443 0.92639 0.92247 1.24962 0.95368 0.96293 0.97418 1.69925 1.38333 1.14350 1.30782 0.86526 0.77723 0.78730 0.84696 1.20597 1.21053 1.19779 1.17970 0.91489 0.86025 0.90923 1.20579 0.99052 0.91429 1.13619 1.20478 0.93145 0.96502 0.96780 1.19124 0.93664 0.93190 1.12089 1.20697 0.97709 0.94764 0.88030 1.60632 1.50540 1.04595 1.14681 1.22576 0.89660 0.93703 0.97617 0.87487 1.23137 0.99312 1.05617 0.95054 1.20864 0.82960 0.76480 0.89309 1.90732 1.25593 1.47400 1.77543 1.48181 1.19312 1.61071 1.07159 1.21562 1.03523 1.01493 0.78330 1.22278 0.90581 0.98332 0.90342 1.20669 0.98459 0.91775 0.97689 1.20855 0.92723 0.98720 1.08710 0.94582 0.91444 0.92640 0.95188 0.94630 0.92620 0.86884 0.87252 0.90744 0.94900 0.83325 0.87952 0.87435 0.90066 0.92170 0.91776 0.90759 0.88913 0.87468 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.19 59.84 0.61 2.31 16 2 N -0.62 -13.05 2.99 -181.00 -0.54 -13.59 16 3 C 0.25 6.21 4.91 -5.19 -0.03 6.18 16 4 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.24 4.84 6.55 -83.79 -0.55 4.29 16 13 C -0.22 -3.78 9.21 -39.38 -0.36 -4.14 16 14 C -0.05 -0.73 9.69 -39.61 -0.38 -1.12 16 15 C -0.18 -2.55 5.39 -104.59 -0.56 -3.11 16 16 C 0.12 1.23 5.69 -4.97 -0.03 1.20 16 17 N -0.67 -6.78 6.30 -106.26 -0.67 -7.45 16 18 C 0.08 0.56 3.45 -66.08 -0.23 0.33 16 19 H 0.11 0.58 7.87 -51.93 -0.41 0.18 16 20 C -0.19 -1.61 6.32 -26.74 -0.17 -1.78 16 21 C 0.52 6.16 8.02 -10.86 -0.09 6.07 16 22 O -0.54 -8.74 17.35 5.56 0.10 -8.65 16 23 N -0.62 -5.92 3.34 -180.21 -0.60 -6.53 16 24 C 0.09 0.75 11.14 59.85 0.67 1.42 16 25 C 0.11 0.76 7.08 -3.07 -0.02 0.74 16 26 C -0.07 -1.09 9.69 -39.61 -0.38 -1.48 16 27 C -0.19 -3.73 9.21 -39.38 -0.36 -4.09 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 31 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.11 1.73 6.14 -52.49 -0.32 1.40 16 35 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.07 0.69 8.03 -51.93 -0.42 0.28 16 37 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 38 H 0.35 4.10 8.47 -39.29 -0.33 3.76 16 39 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.77 7.53 -51.93 -0.39 0.38 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 47 H 0.13 2.90 6.14 -52.49 -0.32 2.58 16 LS Contribution 385.44 15.07 5.81 5.81 Total: -1.00 -31.97 385.44 -9.94 -41.91 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.44 Total: 3.43 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.31 Total: -6.41 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -1.08 Total: -52.49 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.10 Total: -8.65 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.97 -9.94 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263685581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.316 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds