Wall clock time and date at job start Tue Mar 31 2020 11:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 120.00236 * 2 1 4 4 C 1.50696 * 109.46934 * 270.00143 * 3 2 1 5 5 H 1.08001 * 120.00501 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99736 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00063 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99923 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47239 * 89.99523 * 8 6 4 10 10 H 1.48499 * 109.46903 * 209.99799 * 8 6 4 11 11 H 1.48501 * 109.47015 * 329.99170 * 8 6 4 12 12 C 1.39682 * 119.99815 * 180.02562 * 2 1 3 13 13 C 1.38908 * 120.07043 * 359.97438 * 12 2 1 14 14 C 1.38113 * 119.92265 * 179.97438 * 13 12 2 15 15 C 1.38289 * 120.07093 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.92151 * 179.97438 * 15 14 13 17 17 N 1.46905 * 109.47066 * 89.99963 * 16 15 14 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 15 19 19 H 1.08996 * 110.85884 * 34.29507 * 18 17 16 20 20 C 1.54634 * 110.96718 * 270.50806 * 18 17 16 21 21 C 1.51282 * 104.19308 * 266.67824 * 20 18 17 22 22 O 1.21282 * 124.93733 * 163.70892 * 21 20 18 23 23 N 1.34413 * 110.11491 * 343.75097 * 21 20 18 24 24 C 1.46508 * 124.34385 * 179.58635 * 23 21 20 25 25 C 1.46851 * 111.31719 * 359.58493 * 23 21 20 26 26 C 1.38284 * 120.15061 * 0.27277 * 15 14 13 27 27 C 1.38107 * 120.07495 * 359.45470 * 26 15 14 28 28 H 1.09006 * 109.47190 * 270.00125 * 1 2 3 29 29 H 1.09005 * 109.47273 * 29.99773 * 1 2 3 30 30 H 1.08999 * 109.47518 * 150.00002 * 1 2 3 31 31 H 1.08992 * 109.47000 * 30.00031 * 3 2 1 32 32 H 1.08998 * 109.46696 * 150.00317 * 3 2 1 33 33 H 0.96998 * 120.00344 * 180.02562 * 7 6 4 34 34 H 1.07999 * 120.04104 * 359.95514 * 13 12 2 35 35 H 1.07993 * 119.96306 * 180.02562 * 14 13 12 36 36 H 1.09001 * 109.47558 * 330.00127 * 16 15 14 37 37 H 1.08998 * 109.47216 * 209.99789 * 16 15 14 38 38 H 1.00901 * 110.99869 * 56.04737 * 17 16 15 39 39 H 1.08994 * 110.48410 * 25.35894 * 20 18 17 40 40 H 1.09005 * 110.48287 * 147.86916 * 20 18 17 41 41 H 1.08998 * 109.47402 * 359.97189 * 24 23 21 42 42 H 1.09006 * 109.46706 * 119.97288 * 24 23 21 43 43 H 1.09001 * 109.46886 * 239.97412 * 24 23 21 44 44 H 1.09002 * 110.26134 * 258.04815 * 25 23 21 45 45 H 1.08997 * 110.28769 * 136.01054 * 25 23 21 46 46 H 1.08001 * 119.96155 * 179.70462 * 26 15 14 47 47 H 1.08001 * 120.03692 * 180.27771 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6731 8 14 3.4377 3.4170 -3.4339 9 1 2.3078 4.2606 -3.8998 10 1 4.6983 4.1993 -3.4968 11 1 3.5539 2.2201 -4.3051 12 6 2.1633 -1.2097 -0.0005 13 6 1.4702 -2.4135 -0.0005 14 6 2.1638 -3.6078 -0.0016 15 6 3.5467 -3.6060 -0.0021 16 6 4.3001 -4.9111 -0.0027 17 7 4.5444 -5.3349 -1.3880 18 6 5.2780 -6.6070 -1.4277 19 1 4.9861 -7.2495 -0.5970 20 6 6.8053 -6.3651 -1.4300 21 6 7.1763 -6.3503 -2.8965 22 8 8.2161 -5.9165 -3.3456 23 7 6.1856 -6.8869 -3.6294 24 6 6.2152 -7.0195 -5.0882 25 6 5.0696 -7.3233 -2.7805 26 6 4.2397 -2.4094 0.0041 27 6 3.5524 -1.2115 -0.0005 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 4.0312 4.4434 -0.8503 34 1 0.3902 -2.4156 0.0006 35 1 1.6256 -4.5441 -0.0020 36 1 3.7112 -5.6709 0.5111 37 1 5.2527 -4.7810 0.5107 38 1 5.0332 -4.6190 -1.9043 39 1 7.0404 -5.4067 -0.9672 40 1 7.3204 -7.1743 -0.9122 41 1 7.1538 -6.6185 -5.4706 42 1 6.1325 -8.0721 -5.3591 43 1 5.3811 -6.4664 -5.5203 44 1 5.0999 -8.4043 -2.6434 45 1 4.1191 -7.0249 -3.2227 46 1 5.3197 -2.4116 0.0085 47 1 4.0943 -0.2773 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263685581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:19 Heat of formation + Delta-G solvation = -14.372594 kcal Electronic energy + Delta-G solvation = -25918.004400 eV Core-core repulsion = 22292.754189 eV Total energy + Delta-G solvation = -3625.250211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47622 -40.39844 -38.24023 -37.35157 -35.81093 -34.74054 -32.75828 -31.85971 -30.49346 -29.58642 -28.43711 -27.43641 -26.70665 -25.43953 -23.62761 -22.95536 -22.11144 -21.02916 -20.53449 -18.65243 -18.19352 -17.69742 -17.52058 -16.99821 -16.65869 -16.28331 -16.00078 -15.64164 -15.38937 -15.29429 -15.09951 -14.61727 -14.54006 -14.32065 -14.27046 -14.07801 -13.54236 -13.47181 -13.24165 -13.17658 -13.08762 -12.99666 -12.89863 -12.69746 -12.64396 -12.54420 -12.32389 -12.18866 -11.85852 -11.73652 -11.38831 -10.94490 -10.66064 -10.40790 -9.71850 -9.63926 -9.34699 -8.37719 -7.79529 -6.39429 0.73582 0.86911 1.34282 1.36006 1.46654 1.50978 2.12553 2.32424 2.64408 2.99041 3.04148 3.36697 3.42213 3.66057 3.97908 4.07774 4.17508 4.28814 4.31411 4.38418 4.44978 4.50813 4.56847 4.66833 4.70041 4.73544 4.74730 4.80031 4.84534 4.87676 4.93125 4.95492 4.96836 5.04189 5.15866 5.20383 5.35870 5.55084 5.59563 5.69666 5.70850 5.94203 6.05716 6.10362 6.12731 6.26672 6.33187 6.50043 6.81985 6.95389 7.11595 7.32613 8.81166 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.002988 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.897317 B = 9367.725107 C =10768.526098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.633 5.633 3 C 0.267 3.733 4 C -0.541 4.541 5 H 0.048 0.952 6 C 0.013 3.987 7 N -0.926 5.926 8 Si 0.960 3.040 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.274 1.274 12 C 0.212 3.788 13 C -0.219 4.219 14 C -0.044 4.044 15 C -0.160 4.160 16 C 0.120 3.880 17 N -0.679 5.679 18 C 0.084 3.916 19 H 0.142 0.858 20 C -0.181 4.181 21 C 0.500 3.500 22 O -0.595 6.595 23 N -0.622 5.622 24 C 0.087 3.913 25 C 0.108 3.892 26 C -0.071 4.071 27 C -0.220 4.220 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.009 0.991 32 H 0.010 0.990 33 H 0.267 0.733 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.103 0.897 37 H 0.041 0.959 38 H 0.334 0.666 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.117 0.883 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 -26.524 -0.095 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.341 5.341 3 C 0.145 3.855 4 C -0.580 4.580 5 H 0.067 0.933 6 C -0.187 4.187 7 N -0.566 5.566 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.107 3.893 13 C -0.242 4.242 14 C -0.063 4.063 15 C -0.163 4.163 16 C -0.008 4.008 17 N -0.309 5.309 18 C -0.027 4.027 19 H 0.159 0.841 20 C -0.223 4.223 21 C 0.289 3.711 22 O -0.477 6.477 23 N -0.355 5.355 24 C -0.054 4.054 25 C -0.014 4.014 26 C -0.091 4.091 27 C -0.243 4.243 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.166 0.834 36 H 0.121 0.879 37 H 0.059 0.941 38 H 0.152 0.848 39 H 0.110 0.890 40 H 0.149 0.851 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.124 0.876 45 H 0.112 0.888 46 H 0.135 0.865 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.608 -26.254 -0.435 26.307 hybrid contribution 1.440 1.824 -0.789 2.454 sum -0.168 -24.430 -1.224 24.462 Atomic orbital electron populations 1.21602 0.79371 1.02522 1.00978 1.46970 1.05656 1.03745 1.77755 1.18748 0.91033 0.80385 0.95318 1.21785 1.36369 1.06475 0.93387 0.93339 1.25773 0.95085 0.96365 1.01430 1.70031 1.39017 1.14797 1.32781 0.85524 0.77999 0.78235 0.79752 1.19349 1.20451 1.19861 1.18249 0.91563 0.86593 0.92914 1.20859 1.00117 0.90796 1.12441 1.20933 0.93374 0.97137 0.94884 1.19569 0.94044 0.94038 1.08644 1.20733 0.98063 0.93208 0.88802 1.60635 1.51071 1.05234 1.13928 1.22725 0.88175 0.92741 0.99066 0.84067 1.23142 1.00548 1.06016 0.92611 1.21542 0.82571 0.75894 0.91077 1.90693 1.28067 1.50132 1.78803 1.48415 1.19392 1.59806 1.07851 1.21671 1.02696 1.03160 0.77899 1.22505 0.89435 1.00025 0.89482 1.20848 0.99146 0.91636 0.97437 1.20747 0.93338 0.98486 1.11745 0.92873 0.92671 0.90220 0.97289 0.97249 0.92377 0.84968 0.83393 0.87878 0.94070 0.84833 0.88954 0.85082 0.92259 0.89575 0.90960 0.87604 0.88772 0.86458 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.40 10.19 127.77 1.30 4.70 16 2 N -0.63 -27.88 2.99 -726.57 -2.17 -30.06 16 3 C 0.27 14.22 4.91 85.63 0.42 14.64 16 4 C -0.54 -30.93 9.39 25.60 0.24 -30.69 16 5 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 6 C 0.01 0.72 5.46 84.66 0.46 1.19 16 7 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 8 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 C 0.21 8.57 6.55 38.21 0.25 8.82 16 13 C -0.22 -6.96 9.21 22.40 0.21 -6.75 16 14 C -0.04 -1.14 9.69 22.25 0.22 -0.93 16 15 C -0.16 -4.14 5.39 -19.84 -0.11 -4.25 16 16 C 0.12 2.01 5.69 85.55 0.49 2.50 16 17 N -0.68 -11.10 6.30 -490.10 -3.09 -14.19 16 18 C 0.08 0.86 3.45 45.98 0.16 1.02 16 19 H 0.14 0.61 7.87 -2.39 -0.02 0.59 16 20 C -0.18 -2.62 6.32 30.59 0.19 -2.42 16 21 C 0.50 11.53 8.02 87.90 0.71 12.23 16 22 O -0.60 -20.05 17.35 -3.04 -0.05 -20.11 16 23 N -0.62 -10.60 3.34 -842.65 -2.81 -13.41 16 24 C 0.09 1.30 11.14 127.77 1.42 2.73 16 25 C 0.11 1.06 7.08 86.82 0.61 1.68 16 26 C -0.07 -2.35 9.69 22.25 0.22 -2.13 16 27 C -0.22 -9.23 9.21 22.40 0.21 -9.02 16 28 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.05 2.00 8.07 -2.38 -0.02 1.98 16 30 H 0.08 2.32 6.20 -2.39 -0.01 2.30 16 31 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 32 H 0.01 0.55 6.20 -2.39 -0.01 0.53 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.13 3.62 6.14 -2.91 -0.02 3.60 16 35 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.10 1.25 8.03 -2.39 -0.02 1.23 16 37 H 0.04 0.66 8.08 -2.39 -0.02 0.64 16 38 H 0.33 7.16 8.47 -89.69 -0.76 6.40 16 39 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 40 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.06 1.15 7.53 -2.39 -0.02 1.13 16 42 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.09 0.98 8.09 -2.39 -0.02 0.96 16 46 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 47 H 0.09 4.42 6.14 -2.91 -0.02 4.40 16 Total: -1.00 -75.06 385.44 1.39 -73.68 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.21 Total: 18.68 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 6.99 Total: -6.69 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -7.79 Total: -112.53 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -75.06 1.39 -73.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263685581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.304 kcal (2) G-P(sol) polarization free energy of solvation -75.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds