Wall clock time and date at job start Tue Mar 31 2020 11:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46928 * 111.00199 * 2 1 4 4 C 1.52458 * 110.37285 * 326.32011 * 3 2 1 5 5 N 1.45964 * 111.68500 * 297.01733 * 4 3 2 6 6 C 1.34776 * 119.87167 * 242.88841 * 5 4 3 7 7 O 1.21581 * 119.99861 * 4.83269 * 6 5 4 8 8 N 1.34780 * 119.99877 * 184.83363 * 6 5 4 9 9 C 1.46507 * 119.99479 * 174.82907 * 8 6 5 10 10 C 1.53004 * 109.46724 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.46878 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47089 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99757 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00202 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99892 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99839 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47028 * 90.00481 * 16 14 12 18 18 H 1.48509 * 109.46868 * 210.00127 * 16 14 12 19 19 H 1.48498 * 109.47326 * 330.00008 * 16 14 12 20 20 C 1.46903 * 120.26048 * 63.17059 * 5 4 3 21 21 C 1.51937 * 107.96022 * 279.44720 * 20 5 4 22 22 C 1.37814 * 120.49848 * 244.99381 * 21 20 5 23 23 C 1.38426 * 119.70324 * 182.37550 * 22 21 20 24 24 C 1.38304 * 120.04100 * 359.96145 * 23 22 21 25 25 C 1.38090 * 120.30809 * 359.53906 * 24 23 22 26 26 C 1.38520 * 118.86022 * 66.40239 * 21 20 5 27 27 H 1.08999 * 109.46944 * 34.54023 * 1 2 3 28 28 H 1.08998 * 109.47736 * 154.54046 * 1 2 3 29 29 H 1.09001 * 109.47457 * 274.54550 * 1 2 3 30 30 H 1.09000 * 109.32331 * 206.04934 * 3 2 1 31 31 H 1.09001 * 109.17714 * 86.50463 * 3 2 1 32 32 H 1.09002 * 109.03615 * 176.45258 * 4 3 2 33 33 H 1.09003 * 109.03611 * 57.58993 * 4 3 2 34 34 H 0.96995 * 120.00150 * 354.83507 * 8 6 5 35 35 H 1.08993 * 109.47130 * 60.00250 * 9 8 6 36 36 H 1.09002 * 109.47116 * 299.99640 * 9 8 6 37 37 H 1.09002 * 109.46777 * 299.99538 * 10 9 8 38 38 H 1.08993 * 109.47637 * 59.99607 * 10 9 8 39 39 H 1.08999 * 109.47142 * 299.99745 * 11 10 9 40 40 H 1.09002 * 109.47185 * 59.99814 * 11 10 9 41 41 H 0.96991 * 120.00031 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.70591 * 39.05939 * 20 5 4 43 43 H 1.09000 * 109.70728 * 159.68300 * 20 5 4 44 44 H 1.08005 * 120.15122 * 2.35639 * 22 21 20 45 45 H 1.08006 * 119.97853 * 179.97438 * 23 22 21 46 46 H 1.07998 * 119.84595 * 179.51705 * 24 23 22 47 47 H 1.07996 * 120.10340 * 180.08633 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3717 0.0000 4 6 1.0755 2.2934 -0.7926 5 7 1.0019 1.9041 -2.1974 6 6 1.4395 2.7490 -3.1519 7 8 1.9746 3.7950 -2.8391 8 7 1.2839 2.4344 -4.4532 9 6 1.6556 3.4006 -5.4899 10 6 1.3808 2.7992 -6.8697 11 6 1.7696 3.8080 -7.9523 12 6 1.4996 3.2154 -9.3113 13 1 1.0911 2.2191 -9.3945 14 6 1.7730 3.9456 -10.4485 15 7 2.2699 5.1590 -10.3472 16 14 1.4376 3.2112 -12.1330 17 1 0.0526 3.5452 -12.5517 18 1 2.4002 3.7690 -13.1167 19 1 1.5935 1.7358 -12.0698 20 6 0.4470 0.5974 -2.5754 21 6 1.5314 -0.4477 -2.3749 22 6 2.0482 -1.1349 -3.4520 23 6 3.0002 -2.1184 -3.2454 24 6 3.4299 -2.4076 -1.9630 25 6 2.9204 -1.7127 -0.8840 26 6 1.9698 -0.7183 -1.0891 27 1 -0.3633 0.8465 -0.5827 28 1 -0.3634 -0.9278 -0.4417 29 1 -0.3634 0.0814 1.0244 30 1 2.9875 1.3772 -0.4517 31 1 2.0653 1.7284 1.0276 32 1 1.4516 3.3143 -0.7258 33 1 0.0756 2.2553 -0.3601 34 1 0.9258 1.5684 -4.7034 35 1 2.7155 3.6387 -5.4014 36 1 1.0674 4.3100 -5.3667 37 1 1.9688 1.8897 -6.9931 38 1 0.3209 2.5614 -6.9579 39 1 1.1820 4.7178 -7.8290 40 1 2.8298 4.0454 -7.8639 41 1 2.4625 5.6725 -11.1471 42 1 -0.4103 0.3655 -1.9436 43 1 0.1393 0.6173 -3.6209 44 1 1.7117 -0.9074 -4.4527 45 1 3.4079 -2.6599 -4.0862 46 1 4.1670 -3.1809 -1.8048 47 1 3.2592 -1.9403 0.1158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264110961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:43 Heat of formation + Delta-G solvation = 37.968558 kcal Electronic energy + Delta-G solvation = -26906.131898 eV Core-core repulsion = 23283.151370 eV Total energy + Delta-G solvation = -3622.980529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55044 -39.50489 -37.58067 -35.48135 -35.12457 -33.32408 -32.20419 -31.29179 -30.63233 -29.00064 -27.40717 -26.29998 -25.78073 -23.52140 -22.59701 -21.98225 -20.81290 -20.60469 -19.55442 -18.32917 -17.38121 -16.59172 -16.30982 -16.15711 -15.74487 -15.66939 -15.34785 -14.71623 -14.50424 -14.40132 -14.15469 -13.96914 -13.77424 -13.54446 -13.26685 -12.62291 -12.43170 -12.27889 -12.17790 -12.00678 -11.81900 -11.75125 -11.54796 -11.35074 -11.20947 -10.91699 -10.72297 -10.60371 -10.12543 -9.88148 -9.46653 -9.33537 -9.13934 -9.06670 -8.95645 -8.78103 -8.38364 -8.36697 -6.02752 -4.05961 0.97419 1.13384 2.60439 3.24600 3.29750 3.36207 3.38788 3.45593 3.52972 3.95228 4.33569 4.43018 4.46488 4.62861 4.69923 4.80160 4.83197 4.88881 5.03811 5.11429 5.16826 5.22088 5.33020 5.36499 5.42375 5.45390 5.63797 5.67544 5.68766 5.77364 5.79091 6.09283 6.15927 6.22955 6.27290 6.28623 6.46812 6.51590 6.54890 6.59883 6.73392 6.94082 7.00031 7.09604 7.62544 7.75277 7.95935 7.98205 8.36690 8.65955 9.00641 9.58200 11.08578 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.002816 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.981072 B = 9941.491030 C =10973.698173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.497 5.497 3 C 0.041 3.959 4 C 0.088 3.912 5 N -0.628 5.628 6 C 0.705 3.295 7 O -0.587 6.587 8 N -0.739 5.739 9 C 0.133 3.867 10 C -0.120 4.120 11 C 0.025 3.975 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.127 3.873 21 C -0.136 4.136 22 C -0.097 4.097 23 C -0.121 4.121 24 C -0.113 4.113 25 C -0.100 4.100 26 C 0.097 3.903 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.392 0.608 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 -15.159 22.599 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 N -0.217 5.217 3 C -0.086 4.086 4 C -0.036 4.036 5 N -0.365 5.365 6 C 0.407 3.593 7 O -0.465 6.465 8 N -0.395 5.395 9 C 0.010 3.990 10 C -0.158 4.158 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C 0.004 3.996 21 C -0.139 4.139 22 C -0.116 4.116 23 C -0.139 4.139 24 C -0.132 4.132 25 C -0.119 4.119 26 C 0.003 3.997 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.227 0.773 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.124 0.876 43 H 0.106 0.894 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.884 -14.387 23.162 27.419 hybrid contribution -0.517 -0.506 -1.891 2.024 sum -3.401 -14.892 21.272 26.189 Atomic orbital electron populations 1.23130 0.86891 1.02352 1.02881 1.60110 1.08437 1.13619 1.39541 1.22588 0.99055 0.86034 1.00950 1.21733 1.00666 1.01410 0.79803 1.47024 1.66894 1.16714 1.05897 1.15922 0.78985 0.83274 0.81125 1.90904 1.48697 1.25590 1.81344 1.45549 1.69317 1.20349 1.04293 1.21542 1.00436 0.91022 0.85963 1.21887 1.00612 1.00629 0.92645 1.19021 0.97121 0.93636 0.91531 1.21194 1.42683 1.01198 0.90995 0.92676 1.25030 0.95206 0.94902 0.99322 1.69963 1.44007 1.10205 1.29060 0.86584 0.78045 0.79319 0.83978 1.20662 1.21195 1.19894 1.21322 0.94750 0.81098 1.02418 1.20997 1.00257 0.98651 0.94002 1.20957 0.96775 0.95664 0.98193 1.21234 0.97392 0.98000 0.97262 1.21127 0.99800 0.99726 0.92530 1.21054 0.96505 0.95063 0.99293 1.18705 0.96996 0.95773 0.88220 0.91642 0.91434 0.90767 0.90395 0.88780 0.87727 0.90539 0.77292 0.91845 0.91958 0.92819 0.92834 0.96253 0.96226 0.92910 0.87602 0.89380 0.85679 0.85703 0.85798 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.04 7.76 60.06 0.47 0.42 16 2 N -0.50 -4.46 5.00 -179.31 -0.90 -5.36 16 3 C 0.04 0.38 6.11 -4.09 -0.02 0.35 16 4 C 0.09 0.89 5.55 -4.61 -0.03 0.86 16 5 N -0.63 -7.44 2.67 -180.50 -0.48 -7.93 16 6 C 0.71 11.23 8.26 -86.92 -0.72 10.51 16 7 O -0.59 -11.66 15.66 5.29 0.08 -11.58 16 8 N -0.74 -11.18 5.44 -65.22 -0.35 -11.54 16 9 C 0.13 2.41 5.68 -4.04 -0.02 2.39 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.49 16 11 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 12 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 16 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.13 1.19 5.35 -4.36 -0.02 1.16 16 21 C -0.14 -1.37 5.29 -104.06 -0.55 -1.92 16 22 C -0.10 -0.96 9.71 -39.67 -0.39 -1.34 16 23 C -0.12 -1.11 10.05 -39.49 -0.40 -1.51 16 24 C -0.11 -0.99 10.03 -39.61 -0.40 -1.39 16 25 C -0.10 -0.94 9.98 -39.32 -0.39 -1.34 16 26 C 0.10 0.98 4.27 -83.83 -0.36 0.62 16 27 H 0.07 0.46 2.70 -51.93 -0.14 0.32 16 28 H 0.07 0.47 7.47 -51.93 -0.39 0.08 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.89 7.74 -51.93 -0.40 0.48 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.24 6.87 -51.93 -0.36 0.89 16 33 H 0.08 0.61 5.92 -51.93 -0.31 0.30 16 34 H 0.39 4.91 5.99 -40.82 -0.24 4.67 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.11 0.80 4.46 -51.93 -0.23 0.57 16 43 H 0.09 0.77 5.65 -51.93 -0.29 0.47 16 44 H 0.13 1.11 8.01 -52.48 -0.42 0.69 16 45 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 46 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -33.43 365.95 -10.92 -44.35 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.98 Total: 2.72 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -3.52 Total: -6.51 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -1.00 Total: -50.90 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.43 -10.92 -44.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264110961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.315 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds