Wall clock time and date at job start Tue Mar 31 2020 11:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46928 * 111.00199 * 2 1 4 4 C 1.52458 * 110.37285 * 326.32011 * 3 2 1 5 5 N 1.45964 * 111.68500 * 297.01733 * 4 3 2 6 6 C 1.34776 * 119.87167 * 242.88841 * 5 4 3 7 7 O 1.21581 * 119.99861 * 4.83269 * 6 5 4 8 8 N 1.34780 * 119.99877 * 184.83363 * 6 5 4 9 9 C 1.46507 * 119.99479 * 174.82907 * 8 6 5 10 10 C 1.53004 * 109.46724 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.46878 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47089 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99757 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00202 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99892 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99839 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47028 * 90.00481 * 16 14 12 18 18 H 1.48509 * 109.46868 * 210.00127 * 16 14 12 19 19 H 1.48498 * 109.47326 * 330.00008 * 16 14 12 20 20 C 1.46903 * 120.26048 * 63.17059 * 5 4 3 21 21 C 1.51937 * 107.96022 * 279.44720 * 20 5 4 22 22 C 1.37814 * 120.49848 * 244.99381 * 21 20 5 23 23 C 1.38426 * 119.70324 * 182.37550 * 22 21 20 24 24 C 1.38304 * 120.04100 * 359.96145 * 23 22 21 25 25 C 1.38090 * 120.30809 * 359.53906 * 24 23 22 26 26 C 1.38520 * 118.86022 * 66.40239 * 21 20 5 27 27 H 1.08999 * 109.46944 * 34.54023 * 1 2 3 28 28 H 1.08998 * 109.47736 * 154.54046 * 1 2 3 29 29 H 1.09001 * 109.47457 * 274.54550 * 1 2 3 30 30 H 1.09000 * 109.32331 * 206.04934 * 3 2 1 31 31 H 1.09001 * 109.17714 * 86.50463 * 3 2 1 32 32 H 1.09002 * 109.03615 * 176.45258 * 4 3 2 33 33 H 1.09003 * 109.03611 * 57.58993 * 4 3 2 34 34 H 0.96995 * 120.00150 * 354.83507 * 8 6 5 35 35 H 1.08993 * 109.47130 * 60.00250 * 9 8 6 36 36 H 1.09002 * 109.47116 * 299.99640 * 9 8 6 37 37 H 1.09002 * 109.46777 * 299.99538 * 10 9 8 38 38 H 1.08993 * 109.47637 * 59.99607 * 10 9 8 39 39 H 1.08999 * 109.47142 * 299.99745 * 11 10 9 40 40 H 1.09002 * 109.47185 * 59.99814 * 11 10 9 41 41 H 0.96991 * 120.00031 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.70591 * 39.05939 * 20 5 4 43 43 H 1.09000 * 109.70728 * 159.68300 * 20 5 4 44 44 H 1.08005 * 120.15122 * 2.35639 * 22 21 20 45 45 H 1.08006 * 119.97853 * 179.97438 * 23 22 21 46 46 H 1.07998 * 119.84595 * 179.51705 * 24 23 22 47 47 H 1.07996 * 120.10340 * 180.08633 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3717 0.0000 4 6 1.0755 2.2934 -0.7926 5 7 1.0019 1.9041 -2.1974 6 6 1.4395 2.7490 -3.1519 7 8 1.9746 3.7950 -2.8391 8 7 1.2839 2.4344 -4.4532 9 6 1.6556 3.4006 -5.4899 10 6 1.3808 2.7992 -6.8697 11 6 1.7696 3.8080 -7.9523 12 6 1.4996 3.2154 -9.3113 13 1 1.0911 2.2191 -9.3945 14 6 1.7730 3.9456 -10.4485 15 7 2.2699 5.1590 -10.3472 16 14 1.4376 3.2112 -12.1330 17 1 0.0526 3.5452 -12.5517 18 1 2.4002 3.7690 -13.1167 19 1 1.5935 1.7358 -12.0698 20 6 0.4470 0.5974 -2.5754 21 6 1.5314 -0.4477 -2.3749 22 6 2.0482 -1.1349 -3.4520 23 6 3.0002 -2.1184 -3.2454 24 6 3.4299 -2.4076 -1.9630 25 6 2.9204 -1.7127 -0.8840 26 6 1.9698 -0.7183 -1.0891 27 1 -0.3633 0.8465 -0.5827 28 1 -0.3634 -0.9278 -0.4417 29 1 -0.3634 0.0814 1.0244 30 1 2.9875 1.3772 -0.4517 31 1 2.0653 1.7284 1.0276 32 1 1.4516 3.3143 -0.7258 33 1 0.0756 2.2553 -0.3601 34 1 0.9258 1.5684 -4.7034 35 1 2.7155 3.6387 -5.4014 36 1 1.0674 4.3100 -5.3667 37 1 1.9688 1.8897 -6.9931 38 1 0.3209 2.5614 -6.9579 39 1 1.1820 4.7178 -7.8290 40 1 2.8298 4.0454 -7.8639 41 1 2.4625 5.6725 -11.1471 42 1 -0.4103 0.3655 -1.9436 43 1 0.1393 0.6173 -3.6209 44 1 1.7117 -0.9074 -4.4527 45 1 3.4079 -2.6599 -4.0862 46 1 4.1670 -3.1809 -1.8048 47 1 3.2592 -1.9403 0.1158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264110961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:43 Heat of formation + Delta-G solvation = 16.784995 kcal Electronic energy + Delta-G solvation = -26907.050487 eV Core-core repulsion = 23283.151370 eV Total energy + Delta-G solvation = -3623.899117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.39527 -40.59388 -38.36256 -37.01047 -36.12768 -35.17489 -33.17648 -32.78914 -31.50220 -29.71531 -28.78565 -27.54733 -26.56507 -25.05614 -23.63480 -22.87728 -22.30941 -21.53228 -20.67611 -19.41889 -18.54134 -18.11079 -17.51387 -17.07375 -16.60764 -16.55033 -16.47945 -16.32070 -15.80867 -15.57970 -15.21979 -14.88704 -14.66713 -14.54324 -14.27780 -13.98445 -13.74858 -13.56004 -13.30994 -13.06815 -12.86170 -12.79336 -12.75244 -12.53351 -12.39204 -12.25644 -12.03572 -11.94660 -11.69892 -11.63652 -11.31987 -11.15154 -10.55615 -10.36934 -9.99745 -9.78321 -9.63807 -9.18268 -8.19525 -6.31113 0.25769 0.41975 1.41662 1.43160 1.53284 1.55429 2.00181 2.41612 2.66377 2.85407 2.95834 3.14363 3.60502 3.73706 3.91666 3.93216 4.05643 4.12542 4.17575 4.19874 4.24271 4.38394 4.43768 4.50101 4.53048 4.57560 4.67062 4.74909 4.78796 4.92154 4.94089 4.94800 5.06358 5.07757 5.13941 5.35643 5.41670 5.44874 5.51301 5.52085 5.58364 5.69619 5.73117 5.83056 5.83675 5.90681 6.21874 6.39768 6.81785 6.86908 7.38468 7.43441 8.92726 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.002816 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.981072 B = 9941.491030 C =10973.698173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.498 5.498 3 C 0.050 3.950 4 C 0.085 3.915 5 N -0.618 5.618 6 C 0.701 3.299 7 O -0.633 6.633 8 N -0.729 5.729 9 C 0.149 3.851 10 C -0.099 4.099 11 C 0.025 3.975 12 C -0.540 4.540 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.259 1.259 20 C 0.125 3.875 21 C -0.148 4.148 22 C -0.110 4.110 23 C -0.131 4.131 24 C -0.114 4.114 25 C -0.111 4.111 26 C 0.085 3.915 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.407 0.593 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.069 0.931 39 H -0.007 1.007 40 H -0.009 1.009 41 H 0.263 0.737 42 H 0.130 0.870 43 H 0.095 0.905 44 H 0.132 0.868 45 H 0.139 0.861 46 H 0.145 0.855 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 -17.710 22.987 29.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 N -0.218 5.218 3 C -0.077 4.077 4 C -0.039 4.039 5 N -0.355 5.355 6 C 0.402 3.598 7 O -0.515 6.515 8 N -0.386 5.386 9 C 0.024 3.976 10 C -0.137 4.137 11 C -0.013 4.013 12 C -0.578 4.578 13 H 0.086 0.914 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.183 1.183 20 C 0.003 3.997 21 C -0.151 4.151 22 C -0.129 4.129 23 C -0.149 4.149 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.009 4.009 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.245 0.755 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.011 0.989 40 H 0.009 0.991 41 H 0.072 0.928 42 H 0.148 0.852 43 H 0.113 0.887 44 H 0.150 0.850 45 H 0.157 0.843 46 H 0.163 0.837 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.183 -17.008 23.583 29.376 hybrid contribution -0.098 0.253 -1.928 1.947 sum -4.281 -16.755 21.655 27.713 Atomic orbital electron populations 1.23176 0.85575 1.02500 1.03957 1.60193 1.09607 1.12936 1.39087 1.22503 0.97386 0.86284 1.01577 1.21915 1.02435 1.00512 0.78991 1.47053 1.65651 1.16932 1.05819 1.16096 0.78808 0.83258 0.81622 1.90874 1.50739 1.27786 1.82069 1.45214 1.69309 1.20416 1.03675 1.21110 0.99052 0.91193 0.86207 1.21582 1.01617 0.99202 0.91311 1.18927 0.94922 0.94182 0.93254 1.21668 1.42335 1.01766 0.92021 0.91450 1.26029 0.94887 0.95248 1.03958 1.70112 1.45281 1.11853 1.30331 0.85413 0.78011 0.79059 0.78354 1.19782 1.21126 1.18339 1.21565 0.95244 0.79427 1.03457 1.21069 1.00740 0.99065 0.94231 1.21176 0.97137 0.96063 0.98566 1.21499 0.97296 0.98015 0.98060 1.21413 0.99809 0.99872 0.92199 1.21279 0.96497 0.95181 1.00023 1.18919 0.97323 0.96136 0.88555 0.91528 0.91095 0.89240 0.93003 0.86719 0.89835 0.87672 0.75510 0.93782 0.93231 0.91538 0.91196 0.98877 0.99078 0.92818 0.85243 0.88666 0.84997 0.84297 0.83736 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 7.76 127.69 0.99 0.92 16 2 N -0.50 -7.98 5.00 -721.21 -3.61 -11.59 16 3 C 0.05 0.86 6.11 86.12 0.53 1.39 16 4 C 0.09 1.63 5.55 86.30 0.48 2.11 16 5 N -0.62 -14.05 2.67 -843.25 -2.25 -16.30 16 6 C 0.70 22.26 8.26 179.05 1.48 23.74 16 7 O -0.63 -25.86 15.66 -3.97 -0.06 -25.92 16 8 N -0.73 -21.64 5.44 -478.52 -2.60 -24.25 16 9 C 0.15 5.47 5.68 86.38 0.49 5.96 16 10 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 11 C 0.02 1.30 4.97 29.85 0.15 1.45 16 12 C -0.54 -30.03 9.11 25.60 0.23 -29.79 16 13 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 14 C 0.00 -0.21 5.46 84.66 0.46 0.26 16 15 N -0.94 -57.28 13.29 21.45 0.28 -56.99 16 16 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 20 C 0.12 2.09 5.35 85.95 0.46 2.55 16 21 C -0.15 -2.75 5.29 -19.50 -0.10 -2.86 16 22 C -0.11 -2.02 9.71 22.21 0.22 -1.81 16 23 C -0.13 -2.20 10.05 22.33 0.22 -1.98 16 24 C -0.11 -1.81 10.03 22.25 0.22 -1.58 16 25 C -0.11 -1.93 9.98 22.44 0.22 -1.71 16 26 C 0.09 1.58 4.27 38.15 0.16 1.74 16 27 H 0.07 0.73 2.70 -2.39 -0.01 0.72 16 28 H 0.07 0.79 7.47 -2.39 -0.02 0.77 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 1.18 7.74 -2.39 -0.02 1.16 16 31 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 2.00 6.87 -2.39 -0.02 1.98 16 33 H 0.11 1.43 5.92 -2.39 -0.01 1.41 16 34 H 0.41 9.52 5.99 -92.71 -0.56 8.97 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 41 H 0.26 15.14 8.31 -92.72 -0.77 14.37 16 42 H 0.13 1.58 4.46 -2.39 -0.01 1.57 16 43 H 0.10 1.44 5.65 -2.39 -0.01 1.43 16 44 H 0.13 2.13 8.01 -2.91 -0.02 2.11 16 45 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 46 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 47 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -73.57 365.95 0.59 -72.98 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.43 Total: 19.73 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 6.38 Total: -3.30 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -8.18 Total: -109.13 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.06 Total: -25.92 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -73.57 0.59 -72.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264110961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.761 kcal (2) G-P(sol) polarization free energy of solvation -73.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds