Wall clock time and date at job start Tue Mar 31 2020 11:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00280 * 2 1 4 4 C 1.50701 * 109.47062 * 269.99672 * 3 2 1 5 5 C 1.38228 * 120.00598 * 269.72923 * 4 3 2 6 6 C 1.38240 * 120.00513 * 179.76505 * 5 4 3 7 7 C 1.38235 * 119.99643 * 0.50478 * 6 5 4 8 8 C 1.38237 * 120.00041 * 359.74530 * 7 6 5 9 9 C 1.38235 * 119.99695 * 89.99907 * 4 3 2 10 10 C 1.34780 * 119.99961 * 179.97438 * 2 1 3 11 11 O 1.21591 * 119.99762 * 173.74834 * 10 2 1 12 12 N 1.34770 * 119.99781 * 353.48053 * 10 2 1 13 13 C 1.47086 * 120.88139 * 160.97523 * 12 10 2 14 14 C 1.53697 * 108.27780 * 128.75308 * 13 12 10 15 15 N 1.46897 * 109.25840 * 54.07846 * 14 13 12 16 16 C 1.46900 * 111.00339 * 172.60750 * 15 14 13 17 17 C 1.50704 * 109.46948 * 294.30971 * 16 15 14 18 18 H 1.08001 * 120.00124 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99678 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00321 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99863 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46797 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46896 * 119.99802 * 21 19 17 24 24 H 1.48500 * 109.47031 * 240.00336 * 21 19 17 25 25 C 1.46895 * 111.27305 * 296.76170 * 15 14 13 26 26 C 1.47080 * 120.88445 * 341.24747 * 12 10 2 27 27 H 1.09003 * 109.47088 * 271.82079 * 1 2 3 28 28 H 1.09001 * 109.47065 * 31.82079 * 1 2 3 29 29 H 1.08995 * 109.47104 * 151.82345 * 1 2 3 30 30 H 1.08995 * 109.47405 * 29.99944 * 3 2 1 31 31 H 1.09005 * 109.47366 * 150.00033 * 3 2 1 32 32 H 1.08008 * 120.00033 * 359.97438 * 5 4 3 33 33 H 1.08000 * 120.00137 * 180.22861 * 6 5 4 34 34 H 1.07998 * 119.99927 * 179.72367 * 7 6 5 35 35 H 1.08003 * 120.00184 * 179.97438 * 8 7 6 36 36 H 1.08005 * 120.00571 * 0.02562 * 9 4 3 37 37 H 1.08998 * 109.62804 * 248.51772 * 13 12 10 38 38 H 1.08999 * 109.62912 * 9.09880 * 13 12 10 39 39 H 1.09004 * 109.64443 * 294.07746 * 14 13 12 40 40 H 1.08994 * 109.42318 * 173.94939 * 14 13 12 41 41 H 1.09000 * 109.46742 * 54.30350 * 16 15 14 42 42 H 1.08995 * 109.47635 * 174.30898 * 16 15 14 43 43 H 0.96999 * 120.00207 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.49291 * 303.14051 * 25 15 14 45 45 H 1.08997 * 109.49447 * 183.06076 * 25 15 14 46 46 H 1.09002 * 109.62639 * 350.90471 * 26 12 10 47 47 H 1.08999 * 109.62870 * 111.47858 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 3.6033 1.3092 -2.0706 6 6 3.8315 1.7042 -3.3756 7 6 2.9099 2.5023 -4.0272 8 6 1.7577 2.9011 -3.3757 9 6 1.5272 2.5018 -2.0725 10 6 2.1389 -1.1672 0.0005 11 8 3.3493 -1.1704 -0.1141 12 7 1.4715 -2.3305 0.1336 13 6 2.0873 -3.6044 -0.2682 14 6 1.9593 -4.5920 0.9024 15 7 0.5501 -4.6843 1.3067 16 6 0.3568 -5.7455 2.3038 17 6 0.6455 -7.0843 1.6750 18 1 0.9425 -7.1411 0.6382 19 6 0.5305 -8.2366 2.4233 20 7 0.1694 -8.1674 3.6860 21 14 0.8878 -9.8962 1.6437 22 1 1.2724 -9.7028 0.2225 23 1 2.0012 -10.5558 2.3720 24 1 -0.3257 -10.7490 1.7169 25 6 0.0536 -3.3954 1.8067 26 6 0.1058 -2.3593 0.6788 27 1 -0.3633 0.0327 1.0272 28 1 -0.3633 0.8732 -0.5419 29 1 -0.3633 -0.9058 -0.4852 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5138 32 1 4.3256 0.6896 -1.5599 33 1 4.7318 1.3930 -3.8844 34 1 3.0903 2.8146 -5.0452 35 1 1.0379 3.5250 -3.8847 36 1 0.6273 2.8140 -1.5633 37 1 1.5719 -4.0003 -1.1432 38 1 3.1402 -3.4448 -0.5009 39 1 2.5570 -4.2421 1.7442 40 1 2.3127 -5.5741 0.5884 41 1 1.0345 -5.5842 3.1421 42 1 -0.6731 -5.7261 2.6602 43 1 0.0888 -8.9780 4.2125 44 1 0.6778 -3.0620 2.6359 45 1 -0.9751 -3.5096 2.1483 46 1 -0.1521 -1.3761 1.0725 47 1 -0.5964 -2.6379 -0.1069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264241080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:00 Heat of formation + Delta-G solvation = 52.025498 kcal Electronic energy + Delta-G solvation = -26812.854661 eV Core-core repulsion = 23190.483687 eV Total energy + Delta-G solvation = -3622.370974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.69864 -39.25747 -37.58969 -35.84578 -34.49923 -32.51445 -31.87843 -31.04009 -30.58448 -28.32437 -27.74994 -26.20587 -24.64448 -23.28344 -22.68545 -21.94925 -21.53402 -20.39536 -19.19614 -17.16962 -16.92924 -16.57991 -16.20704 -15.95383 -15.27061 -15.17255 -14.86960 -14.53093 -14.40859 -14.22087 -13.92423 -13.55227 -13.52089 -13.35768 -13.21306 -12.89593 -12.70808 -12.63823 -12.10496 -12.08193 -11.44005 -11.31648 -11.18056 -11.08773 -11.00029 -10.82266 -10.70274 -10.52357 -10.42059 -9.97711 -9.72906 -9.22695 -9.07072 -9.00814 -8.79704 -8.47288 -8.22583 -7.28568 -6.05255 -4.06829 1.11160 1.26318 2.67785 3.20034 3.30022 3.37561 3.42266 3.63460 3.87179 4.40351 4.60201 4.63130 4.70219 4.83529 4.91856 4.96113 5.00539 5.14836 5.29353 5.30218 5.31749 5.41767 5.47909 5.50320 5.55221 5.57136 5.68169 5.82112 5.83039 5.90937 5.96182 6.05499 6.23444 6.27822 6.30712 6.37131 6.47515 6.49625 6.59364 6.75430 6.85099 7.03357 7.24727 7.30983 7.76289 7.95936 8.03707 8.15114 8.50187 8.64301 9.00902 9.57779 11.05649 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028495 B = 0.002583 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.384395 B =10836.630559 C =11296.525892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.630 5.630 3 C 0.174 3.826 4 C -0.105 4.105 5 C -0.089 4.089 6 C -0.125 4.125 7 C -0.120 4.120 8 C -0.128 4.128 9 C -0.108 4.108 10 C 0.712 3.288 11 O -0.588 6.588 12 N -0.627 5.627 13 C 0.135 3.865 14 C 0.052 3.948 15 N -0.536 5.536 16 C 0.193 3.807 17 C -0.507 4.507 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.039 3.961 26 C 0.086 3.914 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.025 0.975 40 H 0.095 0.905 41 H -0.010 1.010 42 H 0.031 0.969 43 H 0.261 0.739 44 H 0.025 0.975 45 H 0.079 0.921 46 H 0.105 0.895 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 23.205 -10.643 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.367 5.367 3 C 0.051 3.949 4 C -0.107 4.107 5 C -0.108 4.108 6 C -0.143 4.143 7 C -0.138 4.138 8 C -0.146 4.146 9 C -0.127 4.127 10 C 0.415 3.585 11 O -0.466 6.466 12 N -0.365 5.365 13 C 0.012 3.988 14 C -0.077 4.077 15 N -0.261 5.261 16 C 0.068 3.932 17 C -0.546 4.546 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.091 4.091 26 C -0.036 4.036 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.043 0.957 40 H 0.113 0.887 41 H 0.008 0.992 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.097 0.903 46 H 0.122 0.878 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.887 22.937 -10.935 25.426 hybrid contribution 0.379 -0.836 0.428 1.013 sum 1.266 22.100 -10.507 24.504 Atomic orbital electron populations 1.22464 0.80273 1.03847 1.00905 1.47035 1.06218 1.04654 1.78806 1.20172 0.98157 0.84057 0.92521 1.20289 0.95027 0.98067 0.97288 1.21290 0.97203 0.97701 0.94594 1.21206 0.99572 0.98434 0.95113 1.21163 0.94595 0.98285 0.99744 1.21093 0.97680 1.00777 0.95051 1.21030 0.98601 0.98080 0.94962 1.15884 0.84952 0.80161 0.77489 1.90850 1.11957 1.85845 1.57960 1.47276 1.16754 1.05425 1.67005 1.21814 0.98445 0.81120 0.97402 1.22406 0.90057 0.99395 0.95823 1.62090 1.17173 1.03942 1.42879 1.19723 0.96589 0.88285 0.88559 1.21186 1.45592 0.90324 0.97504 0.91751 1.24996 0.95412 0.99392 0.94832 1.69965 1.48106 1.28492 1.07237 0.86444 0.77838 0.83694 0.79470 1.19604 1.21117 1.21019 1.22444 1.00579 0.91099 0.94929 1.22929 0.83171 1.00865 0.96634 0.91991 0.91814 0.89361 0.89917 0.89100 0.85148 0.86183 0.86359 0.86287 0.86361 0.91432 0.89596 0.95678 0.88699 0.99181 0.95132 0.92960 0.95727 0.90314 0.87802 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 8.58 59.84 0.51 1.08 16 2 N -0.63 -7.40 2.85 -195.05 -0.56 -7.96 16 3 C 0.17 1.78 5.50 -5.19 -0.03 1.75 16 4 C -0.11 -1.11 5.46 -104.63 -0.57 -1.69 16 5 C -0.09 -1.04 9.53 -39.58 -0.38 -1.42 16 6 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 7 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 8 C -0.13 -1.11 10.05 -39.58 -0.40 -1.50 16 9 C -0.11 -0.97 9.70 -39.58 -0.38 -1.35 16 10 C 0.71 11.10 8.00 -86.92 -0.70 10.41 16 11 O -0.59 -10.85 14.72 5.29 0.08 -10.78 16 12 N -0.63 -9.76 2.95 -177.90 -0.52 -10.29 16 13 C 0.14 2.28 6.65 -3.36 -0.02 2.26 16 14 C 0.05 1.04 5.47 -3.46 -0.02 1.02 16 15 N -0.54 -11.27 4.62 -235.47 -1.09 -12.36 16 16 C 0.19 4.96 4.72 -4.97 -0.02 4.94 16 17 C -0.51 -14.03 8.41 -34.44 -0.29 -14.32 16 18 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 21 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 26 C 0.09 1.16 4.53 -3.60 -0.02 1.15 16 27 H 0.06 0.44 6.69 -51.93 -0.35 0.10 16 28 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.09 0.81 4.99 -51.93 -0.26 0.55 16 30 H 0.08 0.61 8.02 -51.93 -0.42 0.19 16 31 H 0.09 1.05 7.46 -51.93 -0.39 0.66 16 32 H 0.13 1.70 7.37 -52.48 -0.39 1.31 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 36 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.46 7.13 -51.93 -0.37 1.09 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.99 6.67 -51.93 -0.35 1.65 16 41 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 42 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 46 H 0.10 1.10 3.56 -59.63 -0.21 0.89 16 47 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -32.89 370.73 -11.27 -44.16 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.26 Total: -0.29 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -3.22 Total: 1.25 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -1.43 Total: -56.40 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.89 -11.27 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264241080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.184 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds