Wall clock time and date at job start Tue Mar 31 2020 11:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00280 * 2 1 4 4 C 1.50701 * 109.47062 * 269.99672 * 3 2 1 5 5 C 1.38228 * 120.00598 * 269.72923 * 4 3 2 6 6 C 1.38240 * 120.00513 * 179.76505 * 5 4 3 7 7 C 1.38235 * 119.99643 * 0.50478 * 6 5 4 8 8 C 1.38237 * 120.00041 * 359.74530 * 7 6 5 9 9 C 1.38235 * 119.99695 * 89.99907 * 4 3 2 10 10 C 1.34780 * 119.99961 * 179.97438 * 2 1 3 11 11 O 1.21591 * 119.99762 * 173.74834 * 10 2 1 12 12 N 1.34770 * 119.99781 * 353.48053 * 10 2 1 13 13 C 1.47086 * 120.88139 * 160.97523 * 12 10 2 14 14 C 1.53697 * 108.27780 * 128.75308 * 13 12 10 15 15 N 1.46897 * 109.25840 * 54.07846 * 14 13 12 16 16 C 1.46900 * 111.00339 * 172.60750 * 15 14 13 17 17 C 1.50704 * 109.46948 * 294.30971 * 16 15 14 18 18 H 1.08001 * 120.00124 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99678 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00321 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99863 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46797 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46896 * 119.99802 * 21 19 17 24 24 H 1.48500 * 109.47031 * 240.00336 * 21 19 17 25 25 C 1.46895 * 111.27305 * 296.76170 * 15 14 13 26 26 C 1.47080 * 120.88445 * 341.24747 * 12 10 2 27 27 H 1.09003 * 109.47088 * 271.82079 * 1 2 3 28 28 H 1.09001 * 109.47065 * 31.82079 * 1 2 3 29 29 H 1.08995 * 109.47104 * 151.82345 * 1 2 3 30 30 H 1.08995 * 109.47405 * 29.99944 * 3 2 1 31 31 H 1.09005 * 109.47366 * 150.00033 * 3 2 1 32 32 H 1.08008 * 120.00033 * 359.97438 * 5 4 3 33 33 H 1.08000 * 120.00137 * 180.22861 * 6 5 4 34 34 H 1.07998 * 119.99927 * 179.72367 * 7 6 5 35 35 H 1.08003 * 120.00184 * 179.97438 * 8 7 6 36 36 H 1.08005 * 120.00571 * 0.02562 * 9 4 3 37 37 H 1.08998 * 109.62804 * 248.51772 * 13 12 10 38 38 H 1.08999 * 109.62912 * 9.09880 * 13 12 10 39 39 H 1.09004 * 109.64443 * 294.07746 * 14 13 12 40 40 H 1.08994 * 109.42318 * 173.94939 * 14 13 12 41 41 H 1.09000 * 109.46742 * 54.30350 * 16 15 14 42 42 H 1.08995 * 109.47635 * 174.30898 * 16 15 14 43 43 H 0.96999 * 120.00207 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.49291 * 303.14051 * 25 15 14 45 45 H 1.08997 * 109.49447 * 183.06076 * 25 15 14 46 46 H 1.09002 * 109.62639 * 350.90471 * 26 12 10 47 47 H 1.08999 * 109.62870 * 111.47858 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 3.6033 1.3092 -2.0706 6 6 3.8315 1.7042 -3.3756 7 6 2.9099 2.5023 -4.0272 8 6 1.7577 2.9011 -3.3757 9 6 1.5272 2.5018 -2.0725 10 6 2.1389 -1.1672 0.0005 11 8 3.3493 -1.1704 -0.1141 12 7 1.4715 -2.3305 0.1336 13 6 2.0873 -3.6044 -0.2682 14 6 1.9593 -4.5920 0.9024 15 7 0.5501 -4.6843 1.3067 16 6 0.3568 -5.7455 2.3038 17 6 0.6455 -7.0843 1.6750 18 1 0.9425 -7.1411 0.6382 19 6 0.5305 -8.2366 2.4233 20 7 0.1694 -8.1674 3.6860 21 14 0.8878 -9.8962 1.6437 22 1 1.2724 -9.7028 0.2225 23 1 2.0012 -10.5558 2.3720 24 1 -0.3257 -10.7490 1.7169 25 6 0.0536 -3.3954 1.8067 26 6 0.1058 -2.3593 0.6788 27 1 -0.3633 0.0327 1.0272 28 1 -0.3633 0.8732 -0.5419 29 1 -0.3633 -0.9058 -0.4852 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5138 32 1 4.3256 0.6896 -1.5599 33 1 4.7318 1.3930 -3.8844 34 1 3.0903 2.8146 -5.0452 35 1 1.0379 3.5250 -3.8847 36 1 0.6273 2.8140 -1.5633 37 1 1.5719 -4.0003 -1.1432 38 1 3.1402 -3.4448 -0.5009 39 1 2.5570 -4.2421 1.7442 40 1 2.3127 -5.5741 0.5884 41 1 1.0345 -5.5842 3.1421 42 1 -0.6731 -5.7261 2.6602 43 1 0.0888 -8.9780 4.2125 44 1 0.6778 -3.0620 2.6359 45 1 -0.9751 -3.5096 2.1483 46 1 -0.1521 -1.3761 1.0725 47 1 -0.5964 -2.6379 -0.1069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264241080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:59 Heat of formation + Delta-G solvation = 31.685632 kcal Electronic energy + Delta-G solvation = -26813.736664 eV Core-core repulsion = 23190.483687 eV Total energy + Delta-G solvation = -3623.252977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81122 -40.08121 -39.00529 -36.90019 -36.00685 -34.43134 -32.91059 -31.82829 -31.74367 -30.00017 -28.66465 -27.57706 -25.99643 -24.66023 -23.67424 -23.33934 -22.56079 -21.65484 -20.42181 -18.57196 -18.07851 -17.91168 -17.48734 -16.87439 -16.73914 -16.07731 -16.04461 -15.91962 -15.73614 -15.55754 -15.30151 -14.86133 -14.63615 -14.36639 -14.20175 -14.11209 -13.90672 -13.69825 -13.41623 -13.14137 -12.92428 -12.76150 -12.61642 -12.48219 -12.33784 -12.25559 -12.02336 -11.90909 -11.81712 -11.66202 -11.35577 -10.89318 -10.62940 -9.98424 -9.78318 -9.68417 -9.40223 -9.02547 -8.21698 -6.31573 0.37972 0.53818 1.41126 1.41696 1.55267 1.63224 2.02427 2.39803 2.71717 3.02842 3.10719 3.24557 3.84848 3.89846 3.93893 4.05787 4.09391 4.19089 4.23562 4.30737 4.31698 4.40850 4.42086 4.56469 4.57045 4.64176 4.72526 4.78103 4.80582 4.82885 4.91693 4.94765 5.00673 5.13211 5.15425 5.18739 5.23448 5.39230 5.58228 5.59855 5.63899 5.65200 5.72892 5.91550 6.02727 6.15199 6.24426 6.58117 6.83990 6.86680 7.38286 7.47619 8.89721 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028495 B = 0.002583 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.384395 B =10836.630559 C =11296.525892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.623 5.623 3 C 0.173 3.827 4 C -0.116 4.116 5 C -0.116 4.116 6 C -0.140 4.140 7 C -0.124 4.124 8 C -0.129 4.129 9 C -0.105 4.105 10 C 0.704 3.296 11 O -0.626 6.626 12 N -0.633 5.633 13 C 0.148 3.852 14 C 0.059 3.941 15 N -0.537 5.537 16 C 0.208 3.792 17 C -0.522 4.522 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.262 1.262 23 H -0.281 1.281 24 H -0.277 1.277 25 C 0.035 3.965 26 C 0.096 3.904 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.004 0.996 40 H 0.077 0.923 41 H -0.045 1.045 42 H 0.012 0.988 43 H 0.264 0.736 44 H 0.010 0.990 45 H 0.089 0.911 46 H 0.142 0.858 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 25.132 -12.478 28.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.359 5.359 3 C 0.051 3.949 4 C -0.117 4.117 5 C -0.135 4.135 6 C -0.158 4.158 7 C -0.142 4.142 8 C -0.147 4.147 9 C -0.124 4.124 10 C 0.408 3.592 11 O -0.507 6.507 12 N -0.370 5.370 13 C 0.024 3.976 14 C -0.070 4.070 15 N -0.261 5.261 16 C 0.082 3.918 17 C -0.560 4.560 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.575 5.575 21 Si 0.794 3.206 22 H -0.186 1.186 23 H -0.207 1.207 24 H -0.202 1.202 25 C -0.095 4.095 26 C -0.025 4.025 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.143 0.857 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.022 0.978 40 H 0.096 0.904 41 H -0.028 1.028 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.028 0.972 45 H 0.108 0.892 46 H 0.159 0.841 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.170 24.916 -12.781 28.028 hybrid contribution 1.011 -1.322 1.005 1.944 sum -0.158 23.595 -11.777 26.371 Atomic orbital electron populations 1.22704 0.77828 1.05201 1.02680 1.47107 1.07725 1.03686 1.77355 1.20310 0.97818 0.84063 0.92728 1.20356 0.95117 0.98822 0.97439 1.21245 0.97867 0.98810 0.95552 1.21370 1.00496 0.99109 0.94819 1.21476 0.94437 0.97559 1.00753 1.21498 0.97768 1.00335 0.95064 1.21338 0.98940 0.96946 0.95146 1.16113 0.84631 0.81064 0.77438 1.90831 1.13863 1.86501 1.59526 1.47276 1.17458 1.04979 1.67309 1.21540 0.98650 0.81291 0.96076 1.22317 0.89031 0.99440 0.96231 1.62035 1.17816 1.04969 1.41322 1.19379 0.94330 0.89673 0.88393 1.21491 1.45495 0.91417 0.97623 0.91689 1.25914 0.95038 1.03462 0.95277 1.70087 1.49040 1.29727 1.08692 0.85335 0.77796 0.78651 0.78850 1.18597 1.20728 1.20241 1.22643 1.00528 0.90048 0.96232 1.23153 0.82362 1.01345 0.95656 0.89819 0.88786 0.89715 0.86186 0.91481 0.87957 0.85696 0.84232 0.83503 0.83383 0.90330 0.90123 0.97786 0.90432 1.02772 0.97029 0.92696 0.97174 0.89243 0.84094 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 8.58 127.77 1.10 1.81 16 2 N -0.62 -13.25 2.85 -889.27 -2.54 -15.79 16 3 C 0.17 3.24 5.50 85.63 0.47 3.71 16 4 C -0.12 -2.28 5.46 -19.87 -0.11 -2.39 16 5 C -0.12 -2.78 9.53 22.27 0.21 -2.57 16 6 C -0.14 -2.84 10.05 22.27 0.22 -2.62 16 7 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 8 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 9 C -0.11 -1.52 9.70 22.27 0.22 -1.30 16 10 C 0.70 21.60 8.00 179.06 1.43 23.04 16 11 O -0.63 -23.91 14.72 -4.00 -0.06 -23.97 16 12 N -0.63 -19.18 2.95 -835.03 -2.46 -21.64 16 13 C 0.15 5.05 6.65 86.50 0.57 5.62 16 14 C 0.06 2.43 5.47 86.54 0.47 2.90 16 15 N -0.54 -23.03 4.62 -898.90 -4.15 -27.18 16 16 C 0.21 11.13 4.72 85.56 0.40 11.54 16 17 C -0.52 -29.53 8.41 25.60 0.22 -29.31 16 18 H 0.06 3.60 7.13 -2.91 -0.02 3.58 16 19 C 0.00 0.06 5.46 84.65 0.46 0.52 16 20 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 21 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 22 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 C 0.03 1.17 5.62 86.38 0.49 1.65 16 26 C 0.10 2.37 4.53 86.35 0.39 2.76 16 27 H 0.08 0.76 6.69 -2.39 -0.02 0.74 16 28 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 29 H 0.08 1.19 4.99 -2.39 -0.01 1.18 16 30 H 0.12 1.32 8.02 -2.39 -0.02 1.30 16 31 H 0.07 1.58 7.46 -2.38 -0.02 1.56 16 32 H 0.10 2.95 7.37 -2.91 -0.02 2.92 16 33 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.08 2.84 7.13 -2.39 -0.02 2.82 16 39 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.08 3.41 6.67 -2.39 -0.02 3.39 16 41 H -0.05 -2.70 8.12 -2.39 -0.02 -2.72 16 42 H 0.01 0.66 7.97 -2.39 -0.02 0.64 16 43 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 44 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 45 H 0.09 2.83 7.99 -2.39 -0.02 2.81 16 46 H 0.14 2.48 3.56 -9.62 -0.03 2.45 16 47 H 0.09 1.95 7.53 -2.39 -0.02 1.93 16 Total: -1.00 -75.07 370.73 1.03 -74.04 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.93 Total: 12.21 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 7.00 Total: 12.05 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -8.87 Total: -120.73 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.06 Total: -23.97 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -75.07 1.03 -74.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264241080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.730 kcal (2) G-P(sol) polarization free energy of solvation -75.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds