Wall clock time and date at job start Tue Mar 31 2020 11:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46841 * 110.99795 * 2 1 4 4 C 1.53039 * 109.52351 * 185.83895 * 3 2 1 5 5 C 1.53127 * 109.27851 * 300.82064 * 4 3 2 6 6 C 1.50696 * 109.52305 * 177.55934 * 5 4 3 7 7 O 1.21285 * 120.00009 * 346.22959 * 6 5 4 8 8 N 1.34771 * 119.99938 * 166.22982 * 6 5 4 9 9 C 1.46499 * 120.00168 * 4.58216 * 8 6 5 10 10 C 1.50704 * 109.46875 * 264.05955 * 9 8 6 11 11 H 1.08003 * 120.00046 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99988 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99956 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00100 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47123 * 89.99999 * 14 12 10 16 16 H 1.48504 * 109.47230 * 209.99889 * 14 12 10 17 17 H 1.48502 * 109.47120 * 329.99700 * 14 12 10 18 18 C 1.46497 * 119.99951 * 184.57839 * 8 6 5 19 19 C 1.50709 * 109.47261 * 269.99999 * 18 8 6 20 20 C 1.38671 * 120.41780 * 270.25284 * 19 18 8 21 21 C 1.38631 * 118.41869 * 180.23849 * 20 19 18 22 22 C 1.38231 * 119.16095 * 359.75777 * 21 20 19 23 23 N 1.31850 * 120.76084 * 359.97438 * 22 21 20 24 24 C 1.31882 * 121.73332 * 0.02562 * 23 22 21 25 25 C 1.53118 * 109.15768 * 57.65367 * 5 4 3 26 26 C 1.46849 * 110.99787 * 124.20963 * 2 1 3 27 27 H 1.08999 * 109.46829 * 60.00232 * 1 2 3 28 28 H 1.09001 * 109.46482 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46801 * 299.99691 * 1 2 3 30 30 H 1.09002 * 109.46241 * 65.82420 * 3 2 1 31 31 H 1.08997 * 109.45779 * 305.85213 * 3 2 1 32 32 H 1.08997 * 109.50451 * 180.88028 * 4 3 2 33 33 H 1.09001 * 109.53669 * 60.78228 * 4 3 2 34 34 H 1.08996 * 109.51750 * 297.68797 * 5 4 3 35 35 H 1.08999 * 109.47397 * 24.05595 * 9 8 6 36 36 H 1.08994 * 109.47366 * 144.05900 * 9 8 6 37 37 H 0.96994 * 120.00371 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.47688 * 150.00344 * 18 8 6 39 39 H 1.08996 * 109.47611 * 29.99970 * 18 8 6 40 40 H 1.07997 * 120.78910 * 359.97046 * 20 19 18 41 41 H 1.07997 * 120.42062 * 179.72878 * 21 20 19 42 42 H 1.08003 * 119.61630 * 180.02562 * 22 21 20 43 43 H 1.07994 * 119.62232 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.50619 * 62.28697 * 25 5 4 45 45 H 1.09004 * 109.50399 * 182.40795 * 25 5 4 46 46 H 1.09001 * 109.46263 * 294.17204 * 26 2 1 47 47 H 1.08996 * 109.46296 * 54.14673 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1189 0.5370 1.0144 6 6 5.6133 0.4464 0.8432 7 8 6.1210 0.7404 -0.2183 8 7 6.3857 0.0387 1.8696 9 6 5.7664 -0.4121 3.1184 10 6 5.7257 0.7308 4.1000 11 1 6.1220 1.6961 3.8216 12 6 5.1827 0.5439 5.3534 13 7 5.1468 1.5414 6.2098 14 14 4.4980 -1.1259 5.8353 15 1 5.5739 -1.9428 6.4519 16 1 3.3930 -0.9451 6.8108 17 1 3.9827 -1.8172 4.6262 18 6 7.8446 0.0461 1.7365 19 6 8.3061 -1.2811 1.1918 20 6 8.6200 -2.3224 2.0522 21 6 9.0451 -3.5238 1.5066 22 6 9.1365 -3.6446 0.1326 23 7 8.8246 -2.6346 -0.6554 24 6 8.4167 -1.4776 -0.1715 25 6 3.5182 -0.8715 1.0209 26 6 1.9953 -0.7708 1.1338 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7324 1.8608 0.9376 31 1 1.5634 1.9256 -0.8330 32 1 3.9099 2.3512 -0.1310 33 1 3.7820 0.8572 -1.0906 34 1 3.8896 1.0361 1.9559 35 1 4.7514 -0.7548 2.9177 36 1 6.3500 -1.2312 3.5385 37 1 4.7651 1.4099 7.0918 38 1 8.2978 0.2152 2.7133 39 1 8.1432 0.8423 1.0547 40 1 8.5393 -2.1989 3.1221 41 1 9.3021 -4.3546 2.1469 42 1 9.4665 -4.5774 -0.3003 43 1 8.1704 -0.6729 -0.8484 44 1 3.7814 -1.3836 0.0954 45 1 3.9099 -1.4303 1.8708 46 1 1.7325 -0.2708 2.0660 47 1 1.5635 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266088430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:52 Heat of formation + Delta-G solvation = 4.393014 kcal Electronic energy + Delta-G solvation = -27755.964510 eV Core-core repulsion = 24131.528036 eV Total energy + Delta-G solvation = -3624.436474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.26738 -39.58781 -37.97291 -35.41800 -33.62334 -32.79235 -32.15233 -31.38941 -30.63863 -28.18350 -27.37730 -25.77051 -23.45536 -23.25762 -23.01271 -22.33497 -21.72389 -19.72249 -18.41254 -17.18713 -16.85100 -16.58768 -15.99019 -15.80775 -15.40243 -15.05847 -14.95401 -14.55799 -14.32399 -14.24273 -13.60553 -13.35257 -13.33451 -13.02470 -12.86486 -12.63645 -12.57885 -12.31802 -12.20861 -11.97637 -11.73806 -11.47070 -11.42779 -11.11183 -10.96932 -10.90102 -10.68714 -10.35385 -10.29313 -10.12580 -9.75664 -9.61120 -9.30382 -9.15702 -8.82360 -8.69469 -8.25413 -7.86615 -6.30152 -4.31711 1.26074 1.46190 3.08538 3.15943 3.18942 3.25676 3.69044 4.01830 4.14385 4.17598 4.62740 4.89711 4.97903 4.98469 5.01946 5.10282 5.14072 5.21546 5.26072 5.28062 5.39128 5.47773 5.55139 5.60864 5.65280 5.79879 5.83060 5.85149 5.93257 5.95241 6.00385 6.04984 6.13213 6.17387 6.18568 6.26223 6.38086 6.43290 6.53598 6.67301 6.70944 6.90018 7.13472 7.16215 7.22815 7.36563 8.02232 8.14931 8.33062 8.74221 8.85253 9.29067 10.82394 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008685 B = 0.006001 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.084371 B = 4664.620528 C = 6586.843284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.093 4.093 5 C -0.107 4.107 6 C 0.527 3.473 7 O -0.564 6.564 8 N -0.585 5.585 9 C 0.199 3.801 10 C -0.541 4.541 11 H 0.079 0.921 12 C 0.078 3.922 13 N -0.889 5.889 14 Si 0.866 3.134 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.263 1.263 18 C 0.161 3.839 19 C -0.145 4.145 20 C -0.063 4.063 21 C -0.180 4.180 22 C 0.089 3.911 23 N -0.491 5.491 24 C 0.119 3.881 25 C -0.111 4.111 26 C 0.058 3.942 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.024 0.976 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.025 0.975 37 H 0.267 0.733 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.150 0.850 43 H 0.160 0.840 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.039 0.961 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 -6.920 -8.107 10.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.072 4.072 4 C -0.132 4.132 5 C -0.128 4.128 6 C 0.316 3.684 7 O -0.444 6.444 8 N -0.315 5.315 9 C 0.078 3.922 10 C -0.579 4.579 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.526 5.526 14 Si 0.693 3.307 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.188 1.188 18 C 0.037 3.963 19 C -0.148 4.148 20 C -0.089 4.089 21 C -0.200 4.200 22 C -0.068 4.068 23 N -0.200 5.200 24 C -0.038 4.038 25 C -0.149 4.149 26 C -0.070 4.070 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.167 0.833 43 H 0.177 0.823 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.057 0.943 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.477 -7.034 -9.772 12.130 hybrid contribution -0.756 -0.415 2.471 2.617 sum -2.233 -7.449 -7.300 10.666 Atomic orbital electron populations 1.22334 0.87702 1.01780 1.00469 1.61963 1.07185 1.14150 1.43594 1.22127 0.95815 0.88785 1.00465 1.21376 0.92934 1.00251 0.98602 1.21325 0.91707 0.97990 1.01758 1.20456 0.89182 0.75818 0.82986 1.90576 1.75606 1.51317 1.26879 1.47911 1.04793 1.63579 1.15191 1.20073 0.94248 0.96028 0.81814 1.21368 1.41354 0.97910 0.97300 0.90266 1.24857 0.95155 0.96441 0.96141 1.69882 1.44685 1.31198 1.06868 0.87000 0.79606 0.84843 0.79258 1.19881 1.20812 1.18783 1.20154 0.81669 0.92518 1.01989 1.21462 1.00045 0.98233 0.95070 1.21627 0.94404 0.92248 1.00658 1.22094 1.02532 0.98604 0.96741 1.22705 0.96303 0.97349 0.90476 1.67717 1.11228 1.00535 1.40501 1.22882 0.93059 0.94513 0.93318 1.21724 0.94311 0.95849 1.02997 1.22080 0.95282 0.98042 0.91623 0.91554 0.91624 0.95742 0.94606 0.90787 0.91204 0.90416 0.87523 0.93425 0.95748 0.92316 0.88916 0.89584 0.84679 0.85146 0.83304 0.82272 0.91106 0.90069 0.94263 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.59 60.07 0.58 0.85 16 2 N -0.54 -7.40 4.91 -242.96 -1.19 -8.59 16 3 C 0.06 0.76 5.46 -3.84 -0.02 0.74 16 4 C -0.09 -1.46 4.82 -26.65 -0.13 -1.59 16 5 C -0.11 -1.86 1.75 -91.65 -0.16 -2.02 16 6 C 0.53 10.22 6.92 -10.99 -0.08 10.14 16 7 O -0.56 -11.65 14.85 5.55 0.08 -11.57 16 8 N -0.59 -11.30 2.44 -176.44 -0.43 -11.73 16 9 C 0.20 4.14 3.82 -5.19 -0.02 4.12 16 10 C -0.54 -13.48 9.74 -34.44 -0.34 -13.82 16 11 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 12 C 0.08 2.01 5.47 -17.82 -0.10 1.92 16 13 N -0.89 -24.94 13.96 55.43 0.77 -24.17 16 14 Si 0.87 18.99 27.47 -169.99 -4.67 14.32 16 15 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.26 -5.38 6.54 56.52 0.37 -5.01 16 18 C 0.16 2.78 5.54 -5.19 -0.03 2.75 16 19 C -0.14 -2.32 5.48 -104.48 -0.57 -2.89 16 20 C -0.06 -0.91 9.86 -39.28 -0.39 -1.29 16 21 C -0.18 -2.27 10.11 -39.44 -0.40 -2.67 16 22 C 0.09 1.18 11.18 -17.55 -0.20 0.99 16 23 N -0.49 -7.88 10.36 -13.25 -0.14 -8.02 16 24 C 0.12 1.97 10.77 -17.55 -0.19 1.78 16 25 C -0.11 -1.77 5.05 -26.65 -0.13 -1.91 16 26 C 0.06 0.82 5.46 -3.83 -0.02 0.80 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.89 8.12 -51.93 -0.42 0.46 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.29 7.87 -51.93 -0.41 0.88 16 34 H 0.11 2.05 7.49 -51.93 -0.39 1.67 16 35 H 0.05 0.98 3.04 -51.93 -0.16 0.82 16 36 H 0.02 0.50 7.54 -51.93 -0.39 0.11 16 37 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.09 1.58 8.03 -51.93 -0.42 1.16 16 39 H 0.09 1.48 7.44 -51.93 -0.39 1.09 16 40 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.15 1.51 8.06 -52.48 -0.42 1.08 16 43 H 0.16 2.70 7.42 -52.49 -0.39 2.31 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.36 5.48 -51.93 -0.28 1.07 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -29.15 373.79 -9.61 -38.76 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.48 Total: 7.48 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.19 Total: -2.11 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.99 Total: -52.51 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.67 Total: 14.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.15 -9.61 -38.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266088430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.153 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds