Wall clock time and date at job start Tue Mar 31 2020 11:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46847 * 111.00598 * 2 1 4 4 C 1.53033 * 109.52404 * 185.84165 * 3 2 1 5 5 C 1.53124 * 109.27660 * 300.81825 * 4 3 2 6 6 C 1.50702 * 109.52183 * 177.55917 * 5 4 3 7 7 O 1.21287 * 119.99819 * 348.21034 * 6 5 4 8 8 N 1.34776 * 120.00144 * 168.20231 * 6 5 4 9 9 C 1.46502 * 119.99593 * 353.26572 * 8 6 5 10 10 C 1.50697 * 109.46994 * 269.58166 * 9 8 6 11 11 H 1.07999 * 120.00241 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99733 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00124 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00120 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47137 * 89.99900 * 14 12 10 16 16 H 1.48498 * 109.47420 * 209.99910 * 14 12 10 17 17 H 1.48504 * 109.47183 * 330.00444 * 14 12 10 18 18 C 1.46494 * 120.00064 * 173.26671 * 8 6 5 19 19 C 1.50698 * 109.47330 * 90.00037 * 18 8 6 20 20 C 1.38234 * 119.61745 * 95.02277 * 19 18 8 21 21 C 1.38628 * 119.15985 * 179.74738 * 20 19 18 22 22 C 1.38674 * 118.41688 * 0.47163 * 21 20 19 23 23 C 1.38180 * 119.16677 * 359.50577 * 22 21 20 24 24 N 1.31850 * 119.62110 * 275.00112 * 19 18 8 25 25 C 1.53122 * 109.15805 * 57.65954 * 5 4 3 26 26 C 1.46849 * 110.99884 * 124.21710 * 2 1 3 27 27 H 1.08999 * 109.46996 * 59.99858 * 1 2 3 28 28 H 1.08996 * 109.47384 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46893 * 300.00415 * 1 2 3 30 30 H 1.09007 * 109.45893 * 65.82330 * 3 2 1 31 31 H 1.08996 * 109.45221 * 305.85537 * 3 2 1 32 32 H 1.09001 * 109.50170 * 180.88321 * 4 3 2 33 33 H 1.08999 * 109.53947 * 60.78150 * 4 3 2 34 34 H 1.08995 * 109.52405 * 297.68532 * 5 4 3 35 35 H 1.09001 * 109.47169 * 29.58301 * 9 8 6 36 36 H 1.09005 * 109.46800 * 149.58227 * 9 8 6 37 37 H 0.97006 * 120.00106 * 179.97438 * 13 12 10 38 38 H 1.09003 * 109.47070 * 330.00097 * 18 8 6 39 39 H 1.08998 * 109.46900 * 210.00022 * 18 8 6 40 40 H 1.07996 * 120.41660 * 359.95393 * 20 19 18 41 41 H 1.08001 * 120.79014 * 180.23126 * 21 20 19 42 42 H 1.08005 * 120.41395 * 179.78093 * 22 21 20 43 43 H 1.08004 * 119.61584 * 180.25407 * 23 22 21 44 44 H 1.09000 * 109.50644 * 62.28650 * 25 5 4 45 45 H 1.08998 * 109.49643 * 182.40237 * 25 5 4 46 46 H 1.09006 * 109.45729 * 294.16701 * 26 2 1 47 47 H 1.08998 * 109.46753 * 54.13664 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3340 -0.1468 5 6 4.1188 0.5367 1.0144 6 6 5.6133 0.4459 0.8431 7 8 6.1244 0.7740 -0.2068 8 7 6.3820 0.0003 1.8565 9 6 5.7859 -0.2556 3.1701 10 6 5.8618 0.9945 4.0082 11 1 6.3089 1.8902 3.6028 12 6 5.3604 0.9949 5.2926 13 7 4.8165 -0.0959 5.7865 14 14 5.4551 2.5442 6.3318 15 1 4.2313 3.3582 6.1196 16 1 5.5600 2.1729 7.7658 17 1 6.6492 3.3335 5.9362 18 6 7.8134 -0.2283 1.6445 19 6 8.5752 1.0341 1.9559 20 6 9.1238 1.2085 3.2127 21 6 9.8272 2.3711 3.4872 22 6 9.9446 3.3234 2.4860 23 6 9.3696 3.0792 1.2535 24 7 8.7112 1.9593 1.0264 25 6 3.5181 -0.8717 1.0208 26 6 1.9952 -0.7709 1.1337 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7326 1.8608 0.9376 31 1 1.5635 1.9255 -0.8330 32 1 3.9101 2.3510 -0.1310 33 1 3.7820 0.8570 -1.0907 34 1 3.8898 1.0358 1.9559 35 1 4.7429 -0.5467 3.0454 36 1 6.3306 -1.0591 3.6660 37 1 4.4641 -0.0958 6.6902 38 1 7.9864 -0.5102 0.6059 39 1 8.1543 -1.0295 2.3001 40 1 9.0087 0.4473 3.9700 41 1 10.2699 2.5331 4.4590 42 1 10.4826 4.2425 2.6660 43 1 9.4602 3.8140 0.4672 44 1 3.7813 -1.3839 0.0953 45 1 3.9098 -1.4305 1.8707 46 1 1.7325 -0.2709 2.0660 47 1 1.5633 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266202587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:45 Heat of formation + Delta-G solvation = 1.942925 kcal Electronic energy + Delta-G solvation = -27866.074028 eV Core-core repulsion = 24241.531311 eV Total energy + Delta-G solvation = -3624.542717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -39.98190 -39.33628 -37.77050 -35.06758 -33.34479 -32.67427 -31.93255 -31.17029 -30.48259 -27.73503 -27.11417 -25.66270 -23.33796 -23.01849 -22.82601 -22.52922 -21.53014 -19.62245 -18.21533 -16.79362 -16.41183 -16.21637 -15.71483 -15.58029 -15.12399 -15.03208 -14.83941 -14.48233 -14.40041 -13.97961 -13.45487 -13.14363 -13.05876 -12.83214 -12.60668 -12.38843 -12.30072 -12.16340 -11.95054 -11.67527 -11.48437 -11.32513 -11.22906 -11.00632 -10.90703 -10.80636 -10.60907 -10.21333 -10.11757 -10.04696 -9.73665 -9.38799 -8.92002 -8.85918 -8.62430 -8.40560 -8.16186 -7.68191 -6.20848 -4.26121 1.55855 1.79077 3.17764 3.25701 3.29302 3.52097 3.91121 4.11775 4.29319 4.48130 4.79953 5.07025 5.11954 5.12682 5.20994 5.23886 5.31068 5.38370 5.48193 5.51222 5.59770 5.62046 5.68327 5.76137 5.87979 5.88499 5.94879 5.99319 6.07355 6.08414 6.17953 6.20890 6.27581 6.31461 6.38641 6.56812 6.58946 6.64998 6.74782 6.84282 7.16212 7.19316 7.23790 7.26813 7.56972 7.75290 8.05725 8.37687 8.56476 8.80456 9.13386 9.41498 10.85468 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011042 B = 0.005380 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.195337 B = 5203.654738 C = 6716.532089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.057 3.943 4 C -0.093 4.093 5 C -0.104 4.104 6 C 0.523 3.477 7 O -0.549 6.549 8 N -0.595 5.595 9 C 0.232 3.768 10 C -0.527 4.527 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.891 5.891 14 Si 0.888 3.112 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.172 3.828 19 C 0.126 3.874 20 C -0.133 4.133 21 C -0.085 4.085 22 C -0.183 4.183 23 C 0.086 3.914 24 N -0.458 5.458 25 C -0.105 4.105 26 C 0.059 3.941 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.023 0.977 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.049 0.951 36 H 0.033 0.967 37 H 0.264 0.736 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.146 0.854 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.039 0.961 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.119 0.337 -5.680 5.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.131 4.131 5 C -0.125 4.125 6 C 0.311 3.689 7 O -0.427 6.427 8 N -0.326 5.326 9 C 0.112 3.888 10 C -0.566 4.566 11 H 0.076 0.924 12 C -0.136 4.136 13 N -0.529 5.529 14 Si 0.715 3.285 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.199 1.199 18 C 0.047 3.953 19 C -0.014 4.014 20 C -0.154 4.154 21 C -0.111 4.111 22 C -0.203 4.203 23 C -0.071 4.071 24 N -0.167 5.167 25 C -0.143 4.143 26 C -0.069 4.069 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.057 0.943 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.074 0.034 -7.301 7.301 hybrid contribution 0.070 1.689 2.735 3.215 sum 0.144 1.723 -4.566 4.882 Atomic orbital electron populations 1.22326 0.87865 1.01737 1.00329 1.61969 1.07052 1.14088 1.43831 1.22117 0.95949 0.88828 1.00209 1.21365 0.92736 1.00245 0.98796 1.21287 0.92063 0.97949 1.01234 1.20410 0.88906 0.76322 0.83222 1.90637 1.75195 1.48652 1.28238 1.48164 1.06262 1.65131 1.13066 1.19614 0.94864 0.96875 0.77456 1.21468 1.39349 0.97653 0.98151 0.92419 1.24871 0.95032 0.96083 0.97570 1.69909 1.39403 1.26983 1.16652 0.86649 0.78700 0.83558 0.79557 1.20626 1.21077 1.19851 1.20085 0.81145 0.91764 1.02262 1.21670 0.94005 0.96030 0.89645 1.21990 0.97039 0.98782 0.97576 1.21487 0.97185 0.93568 0.98864 1.22024 1.02829 1.00233 0.95212 1.22641 0.94049 0.94697 0.95733 1.67582 1.12998 1.01296 1.34844 1.21599 0.93994 0.95742 1.02942 1.22076 0.95504 0.97890 0.91430 0.91692 0.91605 0.95858 0.94837 0.90995 0.91503 0.90519 0.87985 0.93340 0.94868 0.92638 0.89613 0.89633 0.84655 0.85539 0.85737 0.83669 0.91336 0.89894 0.94294 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.59 60.06 0.58 0.87 16 2 N -0.54 -7.76 4.91 -242.96 -1.19 -8.96 16 3 C 0.06 0.83 5.46 -3.84 -0.02 0.81 16 4 C -0.09 -1.58 4.79 -26.65 -0.13 -1.71 16 5 C -0.10 -1.94 1.73 -91.64 -0.16 -2.10 16 6 C 0.52 11.03 6.89 -10.98 -0.08 10.96 16 7 O -0.55 -12.72 15.59 5.55 0.09 -12.63 16 8 N -0.59 -12.33 2.44 -176.43 -0.43 -12.76 16 9 C 0.23 5.20 4.73 -5.19 -0.02 5.18 16 10 C -0.53 -13.19 9.06 -34.44 -0.31 -13.50 16 11 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 12 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -23.55 13.29 55.43 0.74 -22.82 16 14 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.17 3.24 5.71 -5.20 -0.03 3.21 16 19 C 0.13 2.43 6.36 -82.59 -0.53 1.91 16 20 C -0.13 -2.38 9.53 -39.44 -0.38 -2.76 16 21 C -0.08 -1.35 10.18 -39.28 -0.40 -1.75 16 22 C -0.18 -2.76 10.11 -39.44 -0.40 -3.15 16 23 C 0.09 1.45 11.18 -17.55 -0.20 1.25 16 24 N -0.46 -9.15 10.27 -9.47 -0.10 -9.25 16 25 C -0.10 -1.73 5.06 -26.65 -0.13 -1.87 16 26 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.93 8.12 -51.93 -0.42 0.50 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.36 7.89 -51.93 -0.41 0.95 16 34 H 0.10 2.12 7.26 -51.93 -0.38 1.74 16 35 H 0.05 1.11 4.45 -51.93 -0.23 0.88 16 36 H 0.03 0.77 7.90 -51.93 -0.41 0.36 16 37 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 38 H 0.09 1.63 7.53 -51.93 -0.39 1.23 16 39 H 0.09 1.40 7.80 -51.93 -0.40 1.00 16 40 H 0.14 2.33 8.06 -52.49 -0.42 1.90 16 41 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 43 H 0.15 2.03 8.06 -52.48 -0.42 1.61 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.08 1.43 6.00 -51.93 -0.31 1.12 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -29.74 379.02 -10.10 -39.85 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.57 Total: 5.66 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.32 Total: -0.18 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.98 Total: -53.78 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.74 -10.10 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266202587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.788 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds