Wall clock time and date at job start Tue Mar 31 2020 11:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46847 * 111.00598 * 2 1 4 4 C 1.53033 * 109.52404 * 185.84165 * 3 2 1 5 5 C 1.53124 * 109.27660 * 300.81825 * 4 3 2 6 6 C 1.50702 * 109.52183 * 177.55917 * 5 4 3 7 7 O 1.21287 * 119.99819 * 348.21034 * 6 5 4 8 8 N 1.34776 * 120.00144 * 168.20231 * 6 5 4 9 9 C 1.46502 * 119.99593 * 353.26572 * 8 6 5 10 10 C 1.50697 * 109.46994 * 269.58166 * 9 8 6 11 11 H 1.07999 * 120.00241 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99733 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00124 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00120 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47137 * 89.99900 * 14 12 10 16 16 H 1.48498 * 109.47420 * 209.99910 * 14 12 10 17 17 H 1.48504 * 109.47183 * 330.00444 * 14 12 10 18 18 C 1.46494 * 120.00064 * 173.26671 * 8 6 5 19 19 C 1.50698 * 109.47330 * 90.00037 * 18 8 6 20 20 C 1.38234 * 119.61745 * 95.02277 * 19 18 8 21 21 C 1.38628 * 119.15985 * 179.74738 * 20 19 18 22 22 C 1.38674 * 118.41688 * 0.47163 * 21 20 19 23 23 C 1.38180 * 119.16677 * 359.50577 * 22 21 20 24 24 N 1.31850 * 119.62110 * 275.00112 * 19 18 8 25 25 C 1.53122 * 109.15805 * 57.65954 * 5 4 3 26 26 C 1.46849 * 110.99884 * 124.21710 * 2 1 3 27 27 H 1.08999 * 109.46996 * 59.99858 * 1 2 3 28 28 H 1.08996 * 109.47384 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46893 * 300.00415 * 1 2 3 30 30 H 1.09007 * 109.45893 * 65.82330 * 3 2 1 31 31 H 1.08996 * 109.45221 * 305.85537 * 3 2 1 32 32 H 1.09001 * 109.50170 * 180.88321 * 4 3 2 33 33 H 1.08999 * 109.53947 * 60.78150 * 4 3 2 34 34 H 1.08995 * 109.52405 * 297.68532 * 5 4 3 35 35 H 1.09001 * 109.47169 * 29.58301 * 9 8 6 36 36 H 1.09005 * 109.46800 * 149.58227 * 9 8 6 37 37 H 0.97006 * 120.00106 * 179.97438 * 13 12 10 38 38 H 1.09003 * 109.47070 * 330.00097 * 18 8 6 39 39 H 1.08998 * 109.46900 * 210.00022 * 18 8 6 40 40 H 1.07996 * 120.41660 * 359.95393 * 20 19 18 41 41 H 1.08001 * 120.79014 * 180.23126 * 21 20 19 42 42 H 1.08005 * 120.41395 * 179.78093 * 22 21 20 43 43 H 1.08004 * 119.61584 * 180.25407 * 23 22 21 44 44 H 1.09000 * 109.50644 * 62.28650 * 25 5 4 45 45 H 1.08998 * 109.49643 * 182.40237 * 25 5 4 46 46 H 1.09006 * 109.45729 * 294.16701 * 26 2 1 47 47 H 1.08998 * 109.46753 * 54.13664 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3340 -0.1468 5 6 4.1188 0.5367 1.0144 6 6 5.6133 0.4459 0.8431 7 8 6.1244 0.7740 -0.2068 8 7 6.3820 0.0003 1.8565 9 6 5.7859 -0.2556 3.1701 10 6 5.8618 0.9945 4.0082 11 1 6.3089 1.8902 3.6028 12 6 5.3604 0.9949 5.2926 13 7 4.8165 -0.0959 5.7865 14 14 5.4551 2.5442 6.3318 15 1 4.2313 3.3582 6.1196 16 1 5.5600 2.1729 7.7658 17 1 6.6492 3.3335 5.9362 18 6 7.8134 -0.2283 1.6445 19 6 8.5752 1.0341 1.9559 20 6 9.1238 1.2085 3.2127 21 6 9.8272 2.3711 3.4872 22 6 9.9446 3.3234 2.4860 23 6 9.3696 3.0792 1.2535 24 7 8.7112 1.9593 1.0264 25 6 3.5181 -0.8717 1.0208 26 6 1.9952 -0.7709 1.1337 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7326 1.8608 0.9376 31 1 1.5635 1.9255 -0.8330 32 1 3.9101 2.3510 -0.1310 33 1 3.7820 0.8570 -1.0907 34 1 3.8898 1.0358 1.9559 35 1 4.7429 -0.5467 3.0454 36 1 6.3306 -1.0591 3.6660 37 1 4.4641 -0.0958 6.6902 38 1 7.9864 -0.5102 0.6059 39 1 8.1543 -1.0295 2.3001 40 1 9.0087 0.4473 3.9700 41 1 10.2699 2.5331 4.4590 42 1 10.4826 4.2425 2.6660 43 1 9.4602 3.8140 0.4672 44 1 3.7813 -1.3839 0.0953 45 1 3.9098 -1.4305 1.8707 46 1 1.7325 -0.2709 2.0660 47 1 1.5633 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266202587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:43 Heat of formation + Delta-G solvation = -15.444150 kcal Electronic energy + Delta-G solvation = -27866.827988 eV Core-core repulsion = 24241.531311 eV Total energy + Delta-G solvation = -3625.296678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.47432 -40.71901 -39.13407 -36.79986 -34.79842 -34.43815 -33.28490 -32.58022 -31.77826 -29.43497 -28.53059 -27.03314 -25.02999 -24.32425 -24.11767 -23.99770 -22.87564 -20.97240 -19.81832 -18.66767 -17.94689 -17.69637 -17.20297 -16.93332 -16.61312 -16.44133 -16.23965 -16.00647 -15.66667 -15.37198 -14.90015 -14.63336 -14.40530 -14.18397 -14.03882 -14.00146 -13.72547 -13.47726 -13.28758 -13.21676 -13.08783 -12.77454 -12.65562 -12.50254 -12.48751 -12.21751 -12.15917 -11.89299 -11.70930 -11.59246 -11.35188 -10.72996 -10.63065 -10.44091 -10.29636 -9.83631 -9.39678 -9.28833 -8.18150 -6.28494 0.23497 0.48048 1.34461 1.38853 1.46213 1.84098 2.31791 2.43601 3.00470 3.07121 3.12685 3.47416 3.66834 3.83019 3.88707 3.92583 4.05046 4.20083 4.22428 4.30405 4.33824 4.39225 4.52584 4.56707 4.60153 4.60798 4.62866 4.75493 4.79424 4.82959 4.87316 4.92799 4.95031 4.99448 5.04548 5.05051 5.14149 5.28628 5.34436 5.35199 5.40079 5.69760 5.87174 5.89738 6.09325 6.11902 6.16352 6.60830 6.85680 7.21542 7.36084 7.48850 8.86855 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011042 B = 0.005380 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.195337 B = 5203.654738 C = 6716.532089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.063 3.937 4 C -0.086 4.086 5 C -0.099 4.099 6 C 0.517 3.483 7 O -0.573 6.573 8 N -0.594 5.594 9 C 0.247 3.753 10 C -0.525 4.525 11 H 0.038 0.962 12 C 0.031 3.969 13 N -0.913 5.913 14 Si 0.937 3.063 15 H -0.282 1.282 16 H -0.278 1.278 17 H -0.274 1.274 18 C 0.168 3.832 19 C 0.103 3.897 20 C -0.148 4.148 21 C -0.089 4.089 22 C -0.171 4.171 23 C 0.072 3.928 24 N -0.496 5.496 25 C -0.097 4.097 26 C 0.064 3.936 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.023 0.977 30 H 0.028 0.972 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.025 0.975 37 H 0.266 0.734 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.156 0.844 42 H 0.165 0.835 43 H 0.170 0.830 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.026 0.974 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 1.307 -5.364 5.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.065 4.065 4 C -0.125 4.125 5 C -0.120 4.120 6 C 0.306 3.694 7 O -0.453 6.453 8 N -0.325 5.325 9 C 0.126 3.874 10 C -0.564 4.564 11 H 0.056 0.944 12 C -0.169 4.169 13 N -0.552 5.552 14 Si 0.764 3.236 15 H -0.208 1.208 16 H -0.203 1.203 17 H -0.199 1.199 18 C 0.044 3.956 19 C -0.035 4.035 20 C -0.168 4.168 21 C -0.115 4.115 22 C -0.191 4.191 23 C -0.085 4.085 24 N -0.206 5.206 25 C -0.135 4.135 26 C -0.064 4.064 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.152 0.848 41 H 0.173 0.827 42 H 0.183 0.817 43 H 0.187 0.813 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.217 0.995 -6.980 7.054 hybrid contribution 0.233 1.426 2.602 2.976 sum 0.016 2.421 -4.378 5.003 Atomic orbital electron populations 1.22417 0.85736 1.02973 1.01106 1.61980 1.08955 1.13530 1.43231 1.22062 0.94053 0.89540 1.00861 1.21292 0.94640 0.99079 0.97461 1.21253 0.90691 0.99369 1.00702 1.20866 0.89932 0.75739 0.82876 1.90612 1.75856 1.49795 1.29062 1.48148 1.07202 1.64777 1.12323 1.19327 0.94587 0.95635 0.77826 1.21455 1.38843 0.97558 0.98501 0.94412 1.25398 0.94914 0.98205 0.98429 1.69973 1.40064 1.28206 1.17004 0.85868 0.78337 0.80828 0.78565 1.20781 1.20346 1.19917 1.20221 0.80235 0.92840 1.02290 1.21629 0.95225 0.96185 0.90458 1.22083 0.97798 0.99914 0.97012 1.21906 0.96373 0.92792 1.00408 1.22431 1.01509 1.01191 0.93919 1.23166 0.93651 0.94269 0.97442 1.67528 1.14539 1.02639 1.35854 1.21517 0.95466 0.94079 1.02435 1.22020 0.94037 0.99093 0.91235 0.90123 0.90220 0.95811 0.95380 0.88748 0.92590 0.91340 0.90356 0.93711 0.95670 0.92477 0.90331 0.87824 0.84756 0.82664 0.81738 0.81329 0.91225 0.90941 0.95548 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.59 127.69 1.22 1.74 16 2 N -0.55 -14.84 4.91 -922.59 -4.53 -19.37 16 3 C 0.06 1.77 5.46 86.32 0.47 2.24 16 4 C -0.09 -2.96 4.79 30.65 0.15 -2.81 16 5 C -0.10 -3.78 1.73 -11.46 -0.02 -3.80 16 6 C 0.52 22.52 6.89 87.66 0.60 23.12 16 7 O -0.57 -27.41 15.59 -3.05 -0.05 -27.46 16 8 N -0.59 -25.41 2.44 -830.50 -2.03 -27.44 16 9 C 0.25 11.35 4.73 85.63 0.40 11.76 16 10 C -0.52 -26.58 9.06 25.60 0.23 -26.35 16 11 H 0.04 2.05 7.81 -2.91 -0.02 2.03 16 12 C 0.03 1.59 5.46 84.65 0.46 2.05 16 13 N -0.91 -48.23 13.29 21.45 0.28 -47.94 16 14 Si 0.94 41.43 29.54 68.60 2.03 43.46 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 C 0.17 6.54 5.71 85.63 0.49 7.03 16 19 C 0.10 4.07 6.36 42.55 0.27 4.34 16 20 C -0.15 -5.24 9.53 22.36 0.21 -5.03 16 21 C -0.09 -2.66 10.18 22.47 0.23 -2.43 16 22 C -0.17 -4.72 10.11 22.36 0.23 -4.49 16 23 C 0.07 2.34 11.18 84.67 0.95 3.29 16 24 N -0.50 -20.00 10.27 -183.89 -1.89 -21.89 16 25 C -0.10 -3.24 5.06 30.65 0.16 -3.08 16 26 C 0.06 1.84 5.46 86.32 0.47 2.31 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 29 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.09 2.24 8.12 -2.39 -0.02 2.22 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 2.45 7.89 -2.39 -0.02 2.43 16 34 H 0.08 3.38 7.26 -2.39 -0.02 3.36 16 35 H 0.05 2.11 4.45 -2.39 -0.01 2.10 16 36 H 0.03 1.20 7.90 -2.38 -0.02 1.18 16 37 H 0.27 13.45 8.31 -92.70 -0.77 12.68 16 38 H 0.08 3.12 7.53 -2.39 -0.02 3.10 16 39 H 0.10 3.51 7.80 -2.39 -0.02 3.49 16 40 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 42 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 43 H 0.17 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.07 2.55 6.00 -2.39 -0.01 2.54 16 46 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.09 2.33 8.08 -2.39 -0.02 2.31 16 Total: -1.00 -63.97 379.02 1.29 -62.68 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.94 Total: 28.07 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 6.53 Total: 9.89 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -8.16 Total: -116.64 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -63.97 1.29 -62.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266202587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.232 kcal (2) G-P(sol) polarization free energy of solvation -63.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds