Wall clock time and date at job start Tue Mar 31 2020 11:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99960 * 2 1 4 4 C 1.53238 * 109.34265 * 187.25379 * 3 2 1 5 5 N 1.47077 * 108.52071 * 306.17379 * 4 3 2 6 6 C 1.34780 * 120.87846 * 231.18673 * 5 4 3 7 7 O 1.21592 * 119.99813 * 184.99330 * 6 5 4 8 8 N 1.34774 * 119.99988 * 4.99223 * 6 5 4 9 9 C 1.46505 * 119.99640 * 174.92436 * 8 6 5 10 10 H 1.08996 * 109.47223 * 324.99518 * 9 8 6 11 11 C 1.53009 * 109.46792 * 205.00169 * 9 8 6 12 12 C 1.50695 * 109.47253 * 64.99605 * 11 9 8 13 13 H 1.08000 * 119.99830 * 359.73197 * 12 11 9 14 14 C 1.37875 * 119.99828 * 180.02562 * 12 11 9 15 15 N 1.31509 * 120.00145 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00018 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47555 * 59.99588 * 16 14 12 18 18 H 1.48500 * 109.47452 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46814 * 299.99924 * 16 14 12 20 20 C 1.50693 * 109.47307 * 84.99971 * 9 8 6 21 21 C 1.38236 * 120.00013 * 39.72549 * 20 9 8 22 22 C 1.38235 * 120.00073 * 179.80907 * 21 20 9 23 23 C 1.38239 * 119.99607 * 0.39904 * 22 21 20 24 24 C 1.38233 * 120.00426 * 359.85456 * 23 22 21 25 25 C 1.38234 * 119.99707 * 359.95577 * 24 23 22 26 26 C 1.47080 * 118.23935 * 51.45536 * 5 4 3 27 27 C 1.46891 * 111.00198 * 124.30017 * 2 1 3 28 28 H 1.09001 * 109.47585 * 59.99967 * 1 2 3 29 29 H 1.09004 * 109.47125 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47206 * 300.00063 * 1 2 3 31 31 H 1.09000 * 109.49027 * 67.29259 * 3 2 1 32 32 H 1.08996 * 109.51634 * 307.22919 * 3 2 1 33 33 H 1.08994 * 109.63029 * 186.46132 * 4 3 2 34 34 H 1.08998 * 109.78862 * 65.97469 * 4 3 2 35 35 H 0.96993 * 120.00271 * 354.92126 * 8 6 5 36 36 H 1.09003 * 109.46660 * 304.99674 * 11 9 8 37 37 H 1.08997 * 109.46704 * 184.99878 * 11 9 8 38 38 H 0.97000 * 119.99987 * 180.02562 * 15 14 12 39 39 H 1.07999 * 120.00282 * 359.97438 * 21 20 9 40 40 H 1.08002 * 120.00388 * 180.23019 * 22 21 20 41 41 H 1.08000 * 119.99533 * 179.83685 * 23 22 21 42 42 H 1.07995 * 119.99827 * 179.97438 * 24 23 22 43 43 H 1.07994 * 119.99871 * 180.02562 * 25 24 23 44 44 H 1.08993 * 109.62801 * 68.25263 * 26 5 4 45 45 H 1.09000 * 109.62675 * 188.83322 * 26 5 4 46 46 H 1.08997 * 109.49854 * 292.70606 * 27 2 1 47 47 H 1.09005 * 109.49507 * 52.79329 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5163 1.3313 -0.1826 5 7 4.0869 0.4461 0.8441 6 6 5.1055 0.8584 1.6245 7 8 5.6250 0.0845 2.4052 8 7 5.5482 2.1286 1.5394 9 6 6.5787 2.6085 2.4635 10 1 6.4382 2.1420 3.4385 11 6 6.4693 4.1281 2.6048 12 6 5.1560 4.4789 3.2551 13 1 4.4662 3.6966 3.5353 14 6 4.8324 5.7990 3.4868 15 7 5.6700 6.7519 3.1408 16 14 3.2047 6.2338 4.2936 17 1 3.1349 5.6061 5.6376 18 1 3.0979 7.7087 4.4295 19 1 2.0868 5.7323 3.4545 20 6 7.9407 2.2506 1.9269 21 6 8.1995 2.3551 0.5730 22 6 9.4500 2.0305 0.0813 23 6 10.4392 1.5936 0.9425 24 6 10.1788 1.4841 2.2957 25 6 8.9295 1.8124 2.7878 26 6 3.5205 -0.9031 0.9926 27 6 1.9954 -0.7728 1.1328 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7554 1.8531 0.9479 32 1 1.5456 1.9341 -0.8180 33 1 3.9254 2.3351 -0.0689 34 1 3.7591 0.9470 -1.1733 35 1 5.1845 2.7249 0.8664 36 1 6.5211 4.5893 1.6185 37 1 7.2897 4.4956 3.2212 38 1 5.4425 7.6805 3.3042 39 1 7.4256 2.6928 -0.1002 40 1 9.6534 2.1157 -0.9759 41 1 11.4154 1.3375 0.5580 42 1 10.9516 1.1424 2.9683 43 1 8.7262 1.7272 3.8450 44 1 3.7606 -1.4999 0.1127 45 1 3.9323 -1.3771 1.8835 46 1 1.7556 -0.2613 2.0650 47 1 1.5457 -1.7657 1.1362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269608023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:19 Heat of formation + Delta-G solvation = 9.758008 kcal Electronic energy + Delta-G solvation = -27335.063480 eV Core-core repulsion = 23710.859650 eV Total energy + Delta-G solvation = -3624.203830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18317 -38.90350 -37.81934 -35.23578 -34.36979 -32.75297 -31.49038 -30.62544 -30.34472 -28.88754 -28.16471 -25.02942 -24.25961 -23.66698 -22.24512 -21.93309 -21.35765 -19.94581 -19.13076 -17.89803 -16.75568 -16.17009 -15.94247 -15.37080 -15.24421 -14.96465 -14.91628 -14.64678 -14.58586 -14.47307 -13.80441 -13.48928 -13.31153 -12.95711 -12.78355 -12.65675 -12.42417 -12.11799 -12.08298 -11.95974 -11.54750 -11.39292 -11.27371 -11.12246 -11.06515 -10.88993 -10.69904 -10.62634 -10.39282 -9.76073 -9.61044 -9.30547 -8.75089 -8.51312 -8.45710 -8.43751 -8.15965 -8.07434 -6.09838 -4.12979 1.84286 1.86613 2.99462 3.25538 3.31455 3.34036 3.65283 3.83670 4.20699 4.37062 4.44210 4.85183 4.88997 4.98389 5.20714 5.22848 5.26510 5.31529 5.32562 5.39051 5.41593 5.43742 5.47403 5.59445 5.66440 5.67607 5.80543 5.84869 5.96709 5.99949 6.04333 6.18372 6.41052 6.46822 6.61328 6.67564 6.80938 6.87184 6.90374 6.91140 7.00112 7.16111 7.33051 7.46762 7.51890 7.68712 7.87204 8.25841 8.47993 8.92589 9.11051 9.51589 11.00664 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007793 B = 0.005795 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3591.916626 B = 4830.953353 C = 7653.683294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.039 3.961 4 C 0.118 3.882 5 N -0.636 5.636 6 C 0.708 3.292 7 O -0.596 6.596 8 N -0.717 5.717 9 C 0.202 3.798 10 H 0.084 0.916 11 C 0.024 3.976 12 C -0.519 4.519 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.279 1.279 20 C -0.069 4.069 21 C -0.106 4.106 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.107 4.107 26 C 0.138 3.862 27 C 0.039 3.961 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.395 0.605 36 H 0.024 0.976 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.040 0.960 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.301 -11.704 -8.584 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.090 4.090 4 C -0.006 4.006 5 N -0.375 5.375 6 C 0.410 3.590 7 O -0.475 6.475 8 N -0.371 5.371 9 C 0.097 3.903 10 H 0.102 0.898 11 C -0.013 4.013 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.070 4.070 21 C -0.124 4.124 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.126 4.126 26 C 0.014 3.986 27 C -0.090 4.090 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.231 0.769 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.058 0.942 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.734 -12.259 -8.400 15.110 hybrid contribution -1.453 1.145 0.799 2.015 sum -4.187 -11.114 -7.601 14.101 Atomic orbital electron populations 1.22356 0.87221 1.01959 1.00758 1.61961 1.07705 1.13785 1.43297 1.22502 0.95455 0.89348 1.01647 1.21661 0.92387 0.94724 0.91850 1.47266 1.36330 1.15629 1.38298 1.15894 0.79631 0.82881 0.80637 1.90860 1.60374 1.54137 1.42126 1.45304 1.42990 1.10338 1.38441 1.20118 0.80681 0.98323 0.91167 0.89768 1.19393 0.98063 0.85792 0.98084 1.21083 1.02683 0.91906 1.40003 0.92563 1.24971 0.96889 0.96554 0.95656 1.69944 1.35778 0.99989 1.47309 0.86680 0.84103 0.77199 0.80127 1.20247 1.21272 1.20424 1.20581 0.96834 0.95894 0.93687 1.20868 0.96487 0.99903 0.95186 1.21027 0.93725 1.00469 0.99141 1.20976 0.98838 1.01789 0.93805 1.21028 0.96807 1.00891 0.95404 1.21004 0.93083 0.98754 0.99766 1.21531 0.90915 0.83215 1.02901 1.22634 0.95856 0.98524 0.91945 0.91299 0.91402 0.95620 0.93794 0.89621 0.89567 0.90947 0.76850 0.95801 0.94636 0.92818 0.86787 0.86837 0.86922 0.86677 0.86246 0.91450 0.88706 0.94198 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.58 60.06 0.58 0.80 16 2 N -0.54 -6.03 4.88 -242.31 -1.18 -7.21 16 3 C 0.04 0.46 5.62 -3.70 -0.02 0.44 16 4 C 0.12 1.47 6.59 -3.60 -0.02 1.45 16 5 N -0.64 -9.69 3.00 -177.91 -0.53 -10.23 16 6 C 0.71 13.42 8.26 -86.92 -0.72 12.70 16 7 O -0.60 -13.26 15.54 5.28 0.08 -13.18 16 8 N -0.72 -13.45 3.94 -59.81 -0.24 -13.68 16 9 C 0.20 4.21 2.08 -69.08 -0.14 4.07 16 10 H 0.08 1.93 7.52 -51.93 -0.39 1.54 16 11 C 0.02 0.58 4.50 -27.88 -0.13 0.45 16 12 C -0.52 -13.69 8.84 -34.44 -0.30 -14.00 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 16 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.07 -1.31 4.91 -104.63 -0.51 -1.83 16 21 C -0.11 -1.85 9.33 -39.58 -0.37 -2.22 16 22 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 23 C -0.14 -2.01 10.05 -39.58 -0.40 -2.40 16 24 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 25 C -0.11 -1.94 9.67 -39.58 -0.38 -2.32 16 26 C 0.14 1.83 6.61 -3.36 -0.02 1.81 16 27 C 0.04 0.45 5.64 -3.46 -0.02 0.43 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 33 H 0.09 1.08 5.63 -51.93 -0.29 0.79 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.39 6.84 6.10 -40.82 -0.25 6.59 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.11 1.87 7.71 -52.49 -0.40 1.46 16 40 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.12 2.06 8.04 -52.49 -0.42 1.64 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.09 1.38 7.09 -51.93 -0.37 1.01 16 46 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -31.59 380.42 -11.36 -42.95 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.58 Total: 8.03 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -3.36 Total: -3.70 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -1.22 Total: -55.79 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.59 -11.36 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269608023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.708 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds