Wall clock time and date at job start Tue Mar 31 2020 11:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99960 * 2 1 4 4 C 1.53238 * 109.34265 * 187.25379 * 3 2 1 5 5 N 1.47077 * 108.52071 * 306.17379 * 4 3 2 6 6 C 1.34780 * 120.87846 * 231.18673 * 5 4 3 7 7 O 1.21592 * 119.99813 * 184.99330 * 6 5 4 8 8 N 1.34774 * 119.99988 * 4.99223 * 6 5 4 9 9 C 1.46505 * 119.99640 * 174.92436 * 8 6 5 10 10 H 1.08996 * 109.47223 * 324.99518 * 9 8 6 11 11 C 1.53009 * 109.46792 * 205.00169 * 9 8 6 12 12 C 1.50695 * 109.47253 * 64.99605 * 11 9 8 13 13 H 1.08000 * 119.99830 * 359.73197 * 12 11 9 14 14 C 1.37875 * 119.99828 * 180.02562 * 12 11 9 15 15 N 1.31509 * 120.00145 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00018 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47555 * 59.99588 * 16 14 12 18 18 H 1.48500 * 109.47452 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46814 * 299.99924 * 16 14 12 20 20 C 1.50693 * 109.47307 * 84.99971 * 9 8 6 21 21 C 1.38236 * 120.00013 * 39.72549 * 20 9 8 22 22 C 1.38235 * 120.00073 * 179.80907 * 21 20 9 23 23 C 1.38239 * 119.99607 * 0.39904 * 22 21 20 24 24 C 1.38233 * 120.00426 * 359.85456 * 23 22 21 25 25 C 1.38234 * 119.99707 * 359.95577 * 24 23 22 26 26 C 1.47080 * 118.23935 * 51.45536 * 5 4 3 27 27 C 1.46891 * 111.00198 * 124.30017 * 2 1 3 28 28 H 1.09001 * 109.47585 * 59.99967 * 1 2 3 29 29 H 1.09004 * 109.47125 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47206 * 300.00063 * 1 2 3 31 31 H 1.09000 * 109.49027 * 67.29259 * 3 2 1 32 32 H 1.08996 * 109.51634 * 307.22919 * 3 2 1 33 33 H 1.08994 * 109.63029 * 186.46132 * 4 3 2 34 34 H 1.08998 * 109.78862 * 65.97469 * 4 3 2 35 35 H 0.96993 * 120.00271 * 354.92126 * 8 6 5 36 36 H 1.09003 * 109.46660 * 304.99674 * 11 9 8 37 37 H 1.08997 * 109.46704 * 184.99878 * 11 9 8 38 38 H 0.97000 * 119.99987 * 180.02562 * 15 14 12 39 39 H 1.07999 * 120.00282 * 359.97438 * 21 20 9 40 40 H 1.08002 * 120.00388 * 180.23019 * 22 21 20 41 41 H 1.08000 * 119.99533 * 179.83685 * 23 22 21 42 42 H 1.07995 * 119.99827 * 179.97438 * 24 23 22 43 43 H 1.07994 * 119.99871 * 180.02562 * 25 24 23 44 44 H 1.08993 * 109.62801 * 68.25263 * 26 5 4 45 45 H 1.09000 * 109.62675 * 188.83322 * 26 5 4 46 46 H 1.08997 * 109.49854 * 292.70606 * 27 2 1 47 47 H 1.09005 * 109.49507 * 52.79329 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5163 1.3313 -0.1826 5 7 4.0869 0.4461 0.8441 6 6 5.1055 0.8584 1.6245 7 8 5.6250 0.0845 2.4052 8 7 5.5482 2.1286 1.5394 9 6 6.5787 2.6085 2.4635 10 1 6.4382 2.1420 3.4385 11 6 6.4693 4.1281 2.6048 12 6 5.1560 4.4789 3.2551 13 1 4.4662 3.6966 3.5353 14 6 4.8324 5.7990 3.4868 15 7 5.6700 6.7519 3.1408 16 14 3.2047 6.2338 4.2936 17 1 3.1349 5.6061 5.6376 18 1 3.0979 7.7087 4.4295 19 1 2.0868 5.7323 3.4545 20 6 7.9407 2.2506 1.9269 21 6 8.1995 2.3551 0.5730 22 6 9.4500 2.0305 0.0813 23 6 10.4392 1.5936 0.9425 24 6 10.1788 1.4841 2.2957 25 6 8.9295 1.8124 2.7878 26 6 3.5205 -0.9031 0.9926 27 6 1.9954 -0.7728 1.1328 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7554 1.8531 0.9479 32 1 1.5456 1.9341 -0.8180 33 1 3.9254 2.3351 -0.0689 34 1 3.7591 0.9470 -1.1733 35 1 5.1845 2.7249 0.8664 36 1 6.5211 4.5893 1.6185 37 1 7.2897 4.4956 3.2212 38 1 5.4425 7.6805 3.3042 39 1 7.4256 2.6928 -0.1002 40 1 9.6534 2.1157 -0.9759 41 1 11.4154 1.3375 0.5580 42 1 10.9516 1.1424 2.9683 43 1 8.7262 1.7272 3.8450 44 1 3.7606 -1.4999 0.1127 45 1 3.9323 -1.3771 1.8835 46 1 1.7556 -0.2613 2.0650 47 1 1.5457 -1.7657 1.1362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269608023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:18 Heat of formation + Delta-G solvation = -9.401752 kcal Electronic energy + Delta-G solvation = -27335.894309 eV Core-core repulsion = 23710.859650 eV Total energy + Delta-G solvation = -3625.034660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55524 -40.16158 -39.00970 -36.84505 -35.59250 -34.73033 -32.76290 -31.83837 -31.60978 -30.54689 -29.30991 -26.73496 -25.28616 -24.74075 -23.79036 -23.37662 -22.55023 -21.38086 -20.47613 -19.22679 -18.58036 -17.71743 -17.33721 -16.65282 -16.54326 -16.20491 -16.09620 -15.92124 -15.84159 -15.67202 -15.11653 -14.89154 -14.65031 -14.41561 -14.17863 -13.98865 -13.68284 -13.65659 -13.39939 -13.06982 -12.92588 -12.78675 -12.66549 -12.52630 -12.31485 -12.25988 -12.14127 -12.06154 -11.85739 -11.58038 -11.35857 -11.16216 -10.59978 -10.15078 -9.74626 -9.65860 -9.49592 -9.26923 -8.21270 -6.31242 0.53176 0.57829 1.36434 1.38709 1.46522 1.68329 2.19573 2.37680 2.89489 2.92133 3.07130 3.14942 3.85370 3.95680 4.00637 4.02595 4.05954 4.20761 4.22120 4.29099 4.33213 4.43638 4.47952 4.62015 4.64519 4.66379 4.71898 4.75702 4.79322 4.80514 4.83768 5.01805 5.04315 5.14238 5.21248 5.28545 5.40990 5.51102 5.62459 5.62919 5.65651 5.76480 5.83822 5.94999 5.97409 6.09649 6.16456 6.21636 6.80255 7.03066 7.37144 7.62081 8.89213 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007793 B = 0.005795 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3591.916626 B = 4830.953353 C = 7653.683294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.043 3.957 4 C 0.115 3.885 5 N -0.633 5.633 6 C 0.704 3.296 7 O -0.635 6.635 8 N -0.712 5.712 9 C 0.219 3.781 10 H 0.053 0.947 11 C 0.039 3.961 12 C -0.528 4.528 13 H 0.049 0.951 14 C 0.014 3.986 15 N -0.923 5.923 16 Si 0.953 3.047 17 H -0.278 1.278 18 H -0.281 1.281 19 H -0.267 1.267 20 C -0.096 4.096 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.133 4.133 26 C 0.135 3.865 27 C 0.046 3.954 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.017 0.983 31 H 0.019 0.981 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.401 0.599 36 H 0.012 0.988 37 H 0.006 0.994 38 H 0.265 0.735 39 H 0.117 0.883 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.144 0.856 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.019 0.981 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 -12.637 -10.600 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.086 4.086 4 C -0.008 4.008 5 N -0.370 5.370 6 C 0.405 3.595 7 O -0.517 6.517 8 N -0.367 5.367 9 C 0.113 3.887 10 H 0.071 0.929 11 C 0.002 3.998 12 C -0.566 4.566 13 H 0.067 0.933 14 C -0.185 4.185 15 N -0.563 5.563 16 Si 0.779 3.221 17 H -0.203 1.203 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.097 4.097 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.152 4.152 26 C 0.012 3.988 27 C -0.082 4.082 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.239 0.761 36 H 0.031 0.969 37 H 0.024 0.976 38 H 0.073 0.927 39 H 0.135 0.865 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.162 0.838 43 H 0.130 0.870 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.037 0.963 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.288 -13.200 -10.453 17.156 hybrid contribution -1.253 1.391 1.390 2.331 sum -4.541 -11.809 -9.063 15.563 Atomic orbital electron populations 1.22439 0.85633 1.03160 1.01043 1.62010 1.09081 1.13066 1.42589 1.22488 0.94810 0.90008 1.01318 1.21866 0.92982 0.94113 0.91845 1.47365 1.35046 1.16746 1.37883 1.16024 0.80261 0.82408 0.80788 1.90822 1.61917 1.55027 1.43928 1.45101 1.42808 1.10640 1.38147 1.19592 0.82876 0.95618 0.90616 0.92899 1.19124 0.96092 0.88146 0.96438 1.21300 1.03334 0.91943 1.40019 0.93312 1.25725 1.00196 0.96440 0.96126 1.70053 1.37552 1.00320 1.48367 0.85689 0.80310 0.77083 0.79058 1.20312 1.20610 1.19206 1.20470 0.95964 0.98280 0.94990 1.21021 0.97965 1.00502 0.94366 1.21429 0.92704 0.99108 1.01005 1.21461 1.00248 0.99889 0.93165 1.21380 0.96191 0.99882 0.96699 1.21164 0.94398 1.00079 0.99553 1.21680 0.92045 0.82199 1.02844 1.22580 0.94565 0.99832 0.91266 0.89923 0.89812 0.96389 0.96251 0.87206 0.90046 0.88774 0.76095 0.96921 0.97578 0.92654 0.86457 0.83609 0.83072 0.83845 0.87048 0.89679 0.90559 0.96297 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.58 127.69 1.22 1.61 16 2 N -0.54 -10.90 4.88 -920.54 -4.49 -15.39 16 3 C 0.04 0.93 5.62 86.38 0.49 1.42 16 4 C 0.11 2.75 6.59 86.35 0.57 3.32 16 5 N -0.63 -19.32 3.00 -835.05 -2.51 -21.83 16 6 C 0.70 27.66 8.26 179.05 1.48 29.14 16 7 O -0.63 -29.61 15.54 -4.01 -0.06 -29.67 16 8 N -0.71 -27.97 3.94 -461.40 -1.82 -29.78 16 9 C 0.22 9.72 2.08 44.25 0.09 9.81 16 10 H 0.05 2.64 7.52 -2.39 -0.02 2.62 16 11 C 0.04 2.01 4.50 29.85 0.13 2.15 16 12 C -0.53 -28.95 8.84 25.60 0.23 -28.72 16 13 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 14 C 0.01 0.78 5.46 84.65 0.46 1.24 16 15 N -0.92 -53.74 13.29 21.45 0.28 -53.46 16 16 Si 0.95 43.49 29.54 68.60 2.03 45.51 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 C -0.10 -3.82 4.91 -19.87 -0.10 -3.91 16 21 C -0.12 -4.19 9.33 22.27 0.21 -3.98 16 22 C -0.12 -3.56 10.05 22.27 0.22 -3.34 16 23 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 24 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 25 C -0.13 -4.96 9.67 22.27 0.22 -4.75 16 26 C 0.14 3.52 6.61 86.50 0.57 4.09 16 27 C 0.05 1.01 5.64 86.54 0.49 1.50 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 30 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 1.88 8.11 -2.39 -0.02 1.86 16 33 H 0.08 2.02 5.63 -2.39 -0.01 2.01 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.40 14.44 6.10 -92.71 -0.57 13.87 16 36 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.12 3.86 7.71 -2.91 -0.02 3.84 16 40 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 41 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 43 H 0.11 4.15 8.04 -2.91 -0.02 4.12 16 44 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 45 H 0.08 2.28 7.09 -2.39 -0.02 2.26 16 46 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.11 1.81 8.06 -2.38 -0.02 1.79 16 Total: -1.00 -70.61 380.42 0.54 -70.07 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.38 Total: 31.70 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 6.73 Total: 2.86 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -8.53 Total: -120.46 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.06 Total: -29.67 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -70.61 0.54 -70.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269608023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.667 kcal (2) G-P(sol) polarization free energy of solvation -70.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds