Wall clock time and date at job start Tue Mar 31 2020 11:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46429 * 110.99405 * 2 1 4 4 C 1.53384 * 108.65544 * 178.87309 * 3 2 1 5 5 C 1.53043 * 107.92118 * 291.73862 * 4 3 2 6 6 C 1.50801 * 109.64972 * 47.32616 * 5 4 3 7 7 C 1.38620 * 118.12652 * 164.50557 * 6 5 4 8 8 C 1.38048 * 120.49233 * 179.71355 * 7 6 5 9 9 C 1.50690 * 120.05847 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.47213 * 89.99978 * 9 8 7 11 11 C 1.34778 * 120.00555 * 179.97438 * 10 9 8 12 12 O 1.21589 * 119.99325 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00341 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99747 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47064 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47545 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99737 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00337 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99941 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00134 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47326 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47342 * 120.00036 * 20 18 16 23 23 H 1.48509 * 109.47360 * 239.99860 * 20 18 16 24 24 C 1.38317 * 119.88581 * 359.96669 * 8 7 6 25 25 C 1.37804 * 119.95213 * 0.21318 * 24 8 7 26 26 C 1.38375 * 122.01473 * 344.39787 * 6 5 4 27 27 H 1.08998 * 109.46991 * 289.30115 * 1 2 3 28 28 H 1.08999 * 109.47524 * 49.30759 * 1 2 3 29 29 H 1.08996 * 109.46877 * 169.31112 * 1 2 3 30 30 H 1.09000 * 109.60363 * 59.12227 * 3 2 1 31 31 H 1.08995 * 109.74774 * 298.70774 * 3 2 1 32 32 H 1.08999 * 109.76956 * 172.13749 * 4 3 2 33 33 H 1.08993 * 109.81968 * 51.37389 * 4 3 2 34 34 H 1.08997 * 109.44599 * 287.27035 * 5 4 3 35 35 H 1.09004 * 109.41361 * 167.35807 * 5 4 3 36 36 H 1.08007 * 119.75088 * 359.69511 * 7 6 5 37 37 H 1.09003 * 109.47595 * 210.00465 * 9 8 7 38 38 H 1.09002 * 109.47212 * 330.00570 * 9 8 7 39 39 H 0.97000 * 119.99793 * 0.02562 * 10 9 8 40 40 H 0.97002 * 119.99858 * 359.97438 * 13 11 10 41 41 H 1.09002 * 109.47479 * 299.99634 * 14 13 11 42 42 H 1.08997 * 109.47473 * 60.00354 * 14 13 11 43 43 H 1.09006 * 109.47075 * 300.00160 * 15 14 13 44 44 H 1.09001 * 109.47236 * 59.99752 * 15 14 13 45 45 H 0.96996 * 119.99978 * 179.97438 * 19 18 16 46 46 H 1.08001 * 120.02437 * 180.10007 * 24 8 7 47 47 H 1.07997 * 119.78915 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9936 1.3671 0.0000 4 6 3.5259 1.3046 0.0286 5 6 3.9495 0.7561 1.3931 6 6 3.1328 -0.4678 1.7234 7 6 3.5766 -1.2936 2.7445 8 6 2.8636 -2.4237 3.0914 9 6 3.3554 -3.3148 4.2027 10 7 2.7887 -2.8649 5.4765 11 6 3.0911 -3.5171 6.6165 12 8 3.8348 -4.4786 6.5877 13 7 2.5693 -3.1035 7.7883 14 6 2.8986 -3.8121 9.0275 15 6 2.1807 -3.1453 10.2025 16 6 2.5198 -3.8737 11.4773 17 1 3.1811 -4.7273 11.4520 18 6 1.9861 -3.4506 12.6761 19 7 1.1813 -2.4108 12.7071 20 14 2.4060 -4.3540 14.2562 21 1 3.3244 -5.4810 13.9531 22 1 3.0658 -3.4178 15.2015 23 1 1.1612 -4.8820 14.8704 24 6 1.6970 -2.7365 2.4174 25 6 1.2515 -1.9223 1.3988 26 6 1.9687 -0.7785 1.0429 27 1 -0.3633 0.3397 0.9699 28 1 -0.3634 0.6700 -0.7792 29 1 -0.3633 -1.0098 -0.1906 30 1 1.6327 1.8973 0.8813 31 1 1.6655 1.8875 -0.8998 32 1 3.9383 2.3038 -0.1112 33 1 3.8837 0.6444 -0.7614 34 1 3.7875 1.5172 2.1563 35 1 5.0062 0.4901 1.3645 36 1 4.4872 -1.0512 3.2723 37 1 3.0450 -4.3417 4.0093 38 1 4.4433 -3.2672 4.2521 39 1 2.1951 -2.0981 5.4993 40 1 1.9763 -2.3362 7.8112 41 1 2.5777 -4.8508 8.9484 42 1 3.9756 -3.7760 9.1915 43 1 2.5011 -2.1064 10.2818 44 1 1.1037 -3.1817 10.0383 45 1 0.8056 -2.1133 13.5504 46 1 1.1366 -3.6191 2.6881 47 1 0.3400 -2.1688 0.8746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273022268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:18 Heat of formation + Delta-G solvation = -13.178654 kcal Electronic energy + Delta-G solvation = -25279.371302 eV Core-core repulsion = 21654.172864 eV Total energy + Delta-G solvation = -3625.198438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.95725 -39.50120 -37.61044 -34.99980 -34.77440 -34.21393 -32.79662 -31.02770 -30.40202 -29.31511 -27.46944 -26.41235 -24.57144 -24.04398 -22.87912 -21.88959 -21.00679 -20.48268 -19.57446 -18.02301 -17.29303 -16.68049 -16.37323 -16.11617 -15.58197 -15.19863 -14.95803 -14.63853 -14.51319 -14.39272 -13.99979 -13.84808 -13.73386 -13.57838 -13.41326 -13.22419 -12.74217 -12.45669 -12.33671 -12.26024 -12.21006 -11.73221 -11.52713 -11.17042 -11.14568 -11.02808 -10.84006 -10.59381 -10.29028 -10.20313 -9.86878 -9.52826 -9.21999 -9.00894 -8.93728 -8.45950 -8.19147 -7.98619 -6.07228 -4.09515 1.02113 1.13131 3.01811 3.30018 3.31610 3.37675 3.43413 3.64347 3.66054 4.21718 4.35900 4.42495 4.45218 4.53190 4.62684 4.80966 4.82897 4.91435 4.96587 4.98166 5.07853 5.12341 5.22495 5.29934 5.30940 5.36987 5.45699 5.49632 5.58555 5.71354 5.75605 5.81343 5.94058 6.07036 6.34535 6.43386 6.44580 6.45568 6.64602 6.66467 6.81989 6.95255 7.05830 7.31256 7.60721 7.66605 7.92563 8.29205 8.49848 8.96041 9.06176 9.55106 11.04526 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.001923 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.340513 B =14560.238330 C =14800.188930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.498 5.498 3 C 0.056 3.944 4 C -0.123 4.123 5 C -0.079 4.079 6 C -0.128 4.128 7 C -0.070 4.070 8 C -0.132 4.132 9 C 0.186 3.814 10 N -0.750 5.750 11 C 0.698 3.302 12 O -0.599 6.599 13 N -0.739 5.739 14 C 0.140 3.860 15 C 0.012 3.988 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.074 4.074 25 C -0.164 4.164 26 C 0.132 3.868 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.394 0.606 40 H 0.393 0.607 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.261 0.739 46 H 0.126 0.874 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 9.746 -29.571 31.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.212 5.212 3 C -0.071 4.071 4 C -0.160 4.160 5 C -0.116 4.116 6 C -0.131 4.131 7 C -0.090 4.090 8 C -0.133 4.133 9 C 0.062 3.938 10 N -0.407 5.407 11 C 0.398 3.602 12 O -0.478 6.478 13 N -0.393 5.393 14 C 0.017 3.983 15 C -0.025 4.025 16 C -0.558 4.558 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.093 4.093 25 C -0.184 4.184 26 C 0.033 3.967 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.143 0.857 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.227 0.773 40 H 0.226 0.774 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.144 0.856 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.163 8.789 -29.933 31.197 hybrid contribution -0.698 0.600 1.491 1.752 sum -0.535 9.388 -28.442 29.956 Atomic orbital electron populations 1.22538 0.84784 1.03465 1.01449 1.58095 1.08717 1.13309 1.41053 1.22178 0.95909 0.87230 1.01742 1.21715 0.94458 1.01967 0.97885 1.20525 0.99207 0.94722 0.97160 1.19483 0.96879 0.98747 0.98006 1.20918 0.99291 0.93135 0.95623 1.19759 0.96831 0.97405 0.99337 1.19874 0.98048 0.96311 0.79549 1.45215 1.54076 1.35571 1.05802 1.16083 0.80979 0.82712 0.80468 1.90887 1.41280 1.29542 1.86127 1.45531 1.51896 1.35280 1.06558 1.21578 0.99795 0.95561 0.81327 1.19332 0.95811 0.96370 0.91007 1.21102 1.28854 1.14307 0.91491 0.92144 1.25007 0.94986 0.95107 0.99318 1.69971 1.31898 1.25144 1.26390 0.86454 0.78238 0.79779 0.83068 1.19553 1.20971 1.20975 1.20907 0.95031 0.98817 0.94534 1.21103 1.01463 0.95777 1.00084 1.18609 0.94518 0.94302 0.89314 0.94053 0.90657 0.90274 0.93490 0.89755 0.90411 0.90542 0.90717 0.90322 0.85734 0.91124 0.91177 0.77262 0.77438 0.92807 0.92810 0.95991 0.95985 0.92953 0.85648 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 8.82 60.07 0.53 0.67 16 2 N -0.50 -3.87 4.78 -179.13 -0.86 -4.73 16 3 C 0.06 0.34 5.46 -3.88 -0.02 0.32 16 4 C -0.12 -0.72 6.19 -26.51 -0.16 -0.89 16 5 C -0.08 -0.55 5.81 -27.81 -0.16 -0.71 16 6 C -0.13 -1.17 5.74 -104.38 -0.60 -1.77 16 7 C -0.07 -0.67 9.29 -39.51 -0.37 -1.04 16 8 C -0.13 -1.33 5.24 -104.67 -0.55 -1.88 16 9 C 0.19 2.24 5.80 -5.20 -0.03 2.21 16 10 N -0.75 -10.05 5.55 -66.42 -0.37 -10.42 16 11 C 0.70 12.64 8.57 -86.92 -0.74 11.89 16 12 O -0.60 -13.27 16.34 5.29 0.09 -13.18 16 13 N -0.74 -13.50 5.56 -65.23 -0.36 -13.86 16 14 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 15 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 16 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 17 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 20 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 C -0.07 -0.70 9.69 -39.71 -0.38 -1.08 16 25 C -0.16 -1.47 9.03 -39.23 -0.35 -1.82 16 26 C 0.13 1.21 5.81 -83.85 -0.49 0.72 16 27 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 28 H 0.07 0.32 8.06 -51.93 -0.42 -0.10 16 29 H 0.08 0.42 6.31 -51.93 -0.33 0.09 16 30 H 0.05 0.30 8.11 -51.93 -0.42 -0.12 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.39 4.41 8.48 -40.82 -0.35 4.06 16 40 H 0.39 6.20 8.49 -40.82 -0.35 5.85 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 47 H 0.13 0.93 5.98 -52.49 -0.31 0.61 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -33.50 382.25 -11.56 -45.06 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.63 Total: 3.95 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -3.91 Total: -3.52 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.85 Total: -54.63 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.50 -11.56 -45.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273022268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.883 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds